AMCG00018852


Basic Information

Item Value
gene id AMCG00018852
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 22807605 ~ 22815863 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018852
GGGGGGGTCGGGGGAGCAAGTGGTGGATTCGTGAATCTTGCGTTTTATGTTCATCATGGTGGTGGAGTTGTATCTGGATCTCTTCTCCCAGCCCTGCCGCTCGGTTTATATCTTTGCAAAGAAAAACCAAATCCCTTTTGAGTTCAAGAACGTGGTGTTGGCTGAAGGTCAGCAGTATGGCGAGGAGTTTGGTAAGATCAATCCTATGAGGAAGGTTCCTGCCCTGAAAGATGATGACTTCACCTTAGCAGAAAGTATAGCGATCCTGTCTTATCTGGCCCAGAAGTTCAACACTCCAGACCACTGGTACCCAACAGACTTAAAGAAAAGGGCCCGGGTGAATGAGTACCTGGCTTGGCAGCACACCGCCATCAGAACTCATGGATCAAAGTACTTCTGGTTTAAGctCCTGATTCCAATTTTAACTGGGGCTGAAATTCCCAAGGAGAAGATAGACTCTGCCATAGAGGACCTCGAAACATCCCTCAAGATGTTTGAAGAGAAGTTCCTCCAGGACAGAGCCTTCATTGCTGGCGAACAGATCTCACTGGCAGACCTTGTGGCCATTGTGGAGATGATGCAGCCTGTCGGTGCGGGTCTGGATGTCTTCAAGGGGAGACCGAATCTGAGTGCGTGGCGGGATCGTGTGATTGAGGAGATTGGTCAGGAGCTCTTTGACGAAGCTCATTACGTTATCATGAATGCCAAGAACCTGCCCCAAATCTTTGAGCAAAATGGCATGCTGGAGTTCATCAAACCCAAGCtccaaaaaatgtttaattgaaaacctCTCTTCACACCTACATATCAACAGGGCTACTGTAATAGGAGAGAAGAATTCGTTTCGACTCCCTAATGTGCCAGTCTCACATACTGATGTTATTCctcatttaataatatttttttgtaaaaaatataacaaaacattttaaaaaattgctCTATTTTCTCATGTATTGACTTGAAtcaacaattaaagaaaaaacaaataatgtgtattcatattattctcATGCATTTCctctaaaatgtaattacacaaaAAGGAGAGTTCAAGCAAAAATGCACATCGTAATTTACCTTACAAATTACTGTTCAAACTTTTGTACAATATACAGAACACAcgcaaacacaaaatatactgaCTCCAGTATATACTCCAGTTTGATTCACAATATACCACAACCTGAAATATTCAGCTTCCTTACCCTGTTGCTGCTAAGGCATCACTTCACTTTACAAAAAGCCATATTTGGCCATGGTATATTTCAATGTCTTGTAATATATAGTCTACATATTGCACAAAGTTCTATATGTTAGCCttcaatatacatattttttcttatttatatttgttattcaaCAGTTACAAAGGGTGAGACAGAAAAGGTTATATTGCTTTGCTATACATTTTCCAAGGTGATAAAAGAGAGTTTTAAAGCTTCAGTGTTTTTGAAGTTTTGCGTAAATAACTGTttgacaaaactgaaatatctatAACataacatctgtttaaccaaaCAGTAACAAGTGGTGCAATAAACATGTCGGTGGCAATCCAGGTGCAGGGGGTGCACAATGCACACTCCTAAGAGAATGTAGCCTACATGGTAGTCCCccgaataaaaaaaaataatgtaaaataatagcaacagtTCTGGGTGGAGATTTTTTTGGAATCGTTCGGGAAAATAGGGTGAAGGGGCAATCGAACgtttttttgtatgattttcaattacttttctgatttccccattcacttccagcaaagcagctccagagttaacACCCTGTGATGTCACTGCATATTTTTCGATCTCTGTTGAGCTGGACATGAATAActagaatatgtttctacttatagaataacctgagaaaataagtCAGAGCTTCACTGCTCACATTAGTTGTGACCGTTATTATATCTGTGAgcaagtaaaacatttatttatatgaattcaAGTGATTGTACAATAATATCACACATAAttatttgctttgatttgtatgCAGCCCCTGAAAATACACAATCTGGCCCTTTTGAAAACCCCTGGCCTAGCCTATATATTTCTTGTGTGATTAAGACAAAACATATATTAGAAAGAATTGAAATAACCCAGGCCTCATACAATAGTACTTCTTTATTTCACTGTGGagattattttaagaaaatatataatccaaaatatattctcaatctgagtcccatagaaaaataagtTACTGATCTCATTAAAGGAATTTATGGCAAATATTTAGCAATTATTTAAGGCAAATCACAAAACAGAGACAAGTATCTAGCTTCTTTAAGGCATTTCATATAGGCCactaaataaatcagtacaGACTGACACAAAACATTCTAAGTTAAACAACCGCtaataaagttatatttttaaataggcaCAACAGACatctgtattaaaatacattcagataGCATTCAATTAGAATAAGTCTATACTATATATAGCAACTCACATGCAAGAGGTCATATAAACTACACATAACAGGACCTAATTTAGGCTGATGGGATATATAAGTAATACCTAATGATCAGTGCTCCAtagaatgcatttcaaaagctgGAATCCCGTGTAAAACTATCAGTGCAATTGCAATGCCGGATTCAGTTTAATCTCTCACTGAGATTTGCTGGATCAGTTTGAGTCTTCTTGCAACAGCATGCAGCCATGAATTTTTCcttcagatttttatttgtgATGGTCAGAAGTACTCCTGTAGCCAAGCAGAAGAAGGCCATGTTCGGTATAATAATGTGATTCGCCAGATCAGTTGATTTTTCCTGGATAATGAAGCAGATGAACGCCATGATAATGGTGACCAAATACACTACAACCAGTGAGATGATCATTTTTACGATGAGCATGTAGGCATTTCTGCTCTGGAATGAAGTCTCATTTTTCTTCATGGACCTGGTGTGTTTACAGAGATGGGACACAAGACTTATGCTTGTGGTCAGCATAAAAGACAGGGGGATGGGGCAGAGGAAACACAGGAACGTGTAGAGATACAAATTTCTGTTTATTGGCTTTGAGAAATGTACACTCAGCTCAGGACACTTGATGTTCAGAGTATCATTTTCTTCATGGGTAGGGAggctgaagaagaagaaaggtaTGTACAAGATCAAGCAGCTCACTACAGTTAGGATAAGAGCAACATTGATGACACTGGGAATATTCCTCTTGAGTTTGACGAAGAAGGCCATGGGGAAACTGACAATCTTGACGCAAtagaaaacacacagccaagtaATGGACCAGAAACTTAAGCAGGTCGCGCTGAAGAACACATAGAACACAATCCGAATGATGGTGTGCAGCTCCGTGTGGCAGTGCAGCTCAAATTGATTGATGAACAAATACCCAAAGGCAGAGATGTCCAGCAGCACATtggagacagagatgcacaaaATGATGAAATCAACGCACTGGCGGTCTTTGGATTGGCAGAGCTGGGGGACAATCATGACGATGTTGCAGACGTTCCACAGCATCCCAAACAACACCAGAGCTCCACAGCCGATCAAGATGGCAGCACTCCCGGGGAAAAGAATCCCTGCTGTTTCAGAAAAACTACCCATCTCTCCTATCTTTGTCTTATCAGAAGTTGTCTGAAGCACCTCAGAGTTTGAGCACTCTCCACAGAAATCCCAGTCTGGTGATGCTGACATGTAAATATCTAATTTTCCTagctttttgtattttctattcaaaaacaaagttgTATTTAGAATAAACGCATCAGACATTAATGAAGGAAAGGCTAGTACTGTGGTAAGAACTGAAGCTGGGCAAAGACTGGGGTACACACAGtgcgatttattttttttcgttttGGGGTAAACCCTATAGAAAGCCAATACTAAGACAGAGGCAATGTCTGGTCCAGATTGTATGACAGGAAGCAAAGAGGCTGATTCAATTGAATGCAACAGCTTCAATTTACATTGTATCCAAACTAGAAATGCCTGCATGAAGAATTCATCCCTTGCATGGGGAGagaaaaagcacaagcaaaCTAAAAGAAGACAAAATAGCATGAACACATTCCCCTCTGTTTATTCTGTTCATTCAAAAAAGCACCCAGTCAGTTACATAACAGGCTTTTGTCATTATAGGAGTATGTCCACGTAATATTCCTTTAAAGTGGCATACTTTTcgaaatattgtttatttccttgGTCAGTTAGCCTGTGtcttgattgttttattgtttgtgtgtttctgtcaagTACGGTTCAGTTGTTTGGTGCTTTTGTAGAGTACAGATCAGTTTTTGAATAGAAAATGCTGTGTCTGTATGCATTCCTGGTTTAATGATACTAATCAGACCGATTAAAGCAGG

Function

GO: NA

KEGG:

id description
K00799 GST, gst; glutathione S-transferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018852 True 4371 mRNA 0.39 5 22807605 22815863

Neighbor

gene id symbol gene type direction distance location
AMCG00018854 NA coding upstream 573 22800053 ~ 22807032 (+)
AMCG00018851 NA coding upstream 9240 22792277 ~ 22798365 (+)
AMCG00018846 NA coding upstream 41579 22763078 ~ 22766026 (+)
AMCG00018849 NA coding upstream 55100 22744009 ~ 22752505 (+)
AMCG00018848 NA coding upstream 65341 22730728 ~ 22742264 (+)
AMCG00018853 NA coding downstream 4806 22820669 ~ 22835084 (+)
AMCG00018850 gucd1,LOC106585462 coding downstream 47117 22862980 ~ 22870773 (+)
AMCG00018876 NA coding downstream 1556777 24372640 ~ 24377928 (+)
AMCG00018886 selenom,selm,LOC103043669 coding downstream 1893811 24709674 ~ 24713528 (+)
AMCG00018899 NA coding downstream 2268313 25084176 ~ 25090285 (+)
G119071 NA non-coding upstream 140464 22666892 ~ 22667141 (+)
G119016 NA non-coding upstream 228269 22579051 ~ 22579336 (+)
G119015 LOC106927871,LOC103148411 non-coding upstream 229892 22577501 ~ 22577713 (+)
G119014 NA non-coding upstream 230645 22576722 ~ 22576960 (+)
G119013 NA non-coding upstream 231915 22575459 ~ 22575690 (+)
G119177 NA non-coding downstream 163408 22979271 ~ 22982799 (+)
G119178 NA non-coding downstream 179113 22994976 ~ 22995190 (+)
G119231 NA non-coding downstream 278703 23094566 ~ 23108600 (+)
G119234 NA non-coding downstream 293738 23109601 ~ 23111520 (+)
G119272 pitpnb,LOC107396064,LOC107653151,LOC107704163,LOC107706770 non-coding downstream 1079164 23895027 ~ 23928632 (+)
AMCG00018820 NA other upstream 909905 21848370 ~ 21897700 (+)
G118815 NA other upstream 1618359 21187956 ~ 21189246 (+)
AMCG00018802 dnah10,LOC102798403,LOC105907537,LOC105907538 other upstream 2035019 20723610 ~ 20772586 (+)
AMCG00018800 ddx55,gtf2h3,eif2b1 other upstream 2112411 20679280 ~ 20695194 (+)
AMCG00018792 LOC106928543 other upstream 2204290 20601956 ~ 20603315 (+)
G119507 NA other downstream 2418219 25234082 ~ 25267781 (+)
AMCG00018913 NA other downstream 2650228 25466091 ~ 25485446 (+)
AMCG00018922 med13l other downstream 2862814 25678677 ~ 25718426 (+)
G119762 NA other downstream 3644757 26460620 ~ 26461227 (+)

Expression


Co-expression Network