AMCG00018876


Basic Information

Item Value
gene id AMCG00018876
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 24372640 ~ 24377928 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018876
ATGAATCCTAAGGGAAACTTGCATGTGATCTCCCCACTGAGGGACAGTGTTCCTCTGTCCAAAGTCGCAGGGACCCCTGTATACCTCAAACTGGACACCGCTCAACCCACAGGCTCCTTCAAGATTAGAGGCATTGGACACCTCTGCAGAACGTGGGCTGAGCGGGGGTGCATACGATTTATCTGCTCCTCAGGGGGCAATGCAGGCATGGCAGCAGCCTACTCAGCTCGCAAACTGGGCATCCCTGCCACCATCATGGTACCCACCAGCACCCCCTCCTTCACCATCCAGAGGCTGAAGGACGAGGGAGCCACAGTATCGGTGGAGGGTGAGATGTTGGATGAAACGATTGACCACGCCATGCGCCTGGCAGACAACAACCCAGGCTGGGTGTACGTGCCCCCCTTCGATGACCCCCTCATTTGGGAGGGCCACACGTCCATTGTCCTGGAGCTGAAGGAACAGATGGATTGTCAGCCTGGGGCCATCGTCCTGTCCGTGGGCGGAGGGGGCATGCTGTGTGGGGTGGTGCAGGGACTGAGACAAGTGGGGTGGGAGGATGTGCCCATCATTGCCATGGAAACCATGGGGGCACACAGCTTTCATGCTGCCATGCAAGCTGGCCACCTGGTCACTCTGCCCACAATCACCAGTGTTGCAAAGACTCTGGGGGCGAAGCAAGTGGGGGCACAGACACTCAAGCTGGCCATGGAGCACACGATCTTCCCAGAGGTGGTGACAGACCAAGATGCAGTGGTGGCTATTGAGCGGTTTGTGGaTGATGAGAAGATTTTGGTGGAGCCTGCTTGCGGTGCCGCCCTAGCTGCTGTTTACAACAACACCATTGGCAAGTTGCAAGAGGAAGGCAAACTCAGCCGTGACCTGGGCCCAGTGGTGGTGGTCGTCTGTGGGGGCAACAACATCACACTGGGGCAGCTGCAGAGACTCAAGGAACAGCTGGGGTTGCCCAGCCTCACTGCTGCCTAA

Function

GO: NA

KEGG:

id description
K17989 SDS, SDH, CHA1; L-serine/L-threonine ammonia-lyase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018876 True 987 mRNA 0.58 7 24372640 24377928

Neighbor

gene id symbol gene type direction distance location
AMCG00018850 gucd1,LOC106585462 coding upstream 1501867 22862980 ~ 22870773 (+)
AMCG00018853 NA coding upstream 1537556 22820669 ~ 22835084 (+)
AMCG00018852 NA coding upstream 1556777 22807605 ~ 22815863 (+)
AMCG00018854 NA coding upstream 1565608 22800053 ~ 22807032 (+)
AMCG00018851 NA coding upstream 1574275 22792277 ~ 22798365 (+)
AMCG00018886 selenom,selm,LOC103043669 coding downstream 331746 24709674 ~ 24713528 (+)
AMCG00018899 NA coding downstream 706248 25084176 ~ 25090285 (+)
AMCG00018897 LOC106585468,LOC104958862 coding downstream 713203 25091131 ~ 25117419 (+)
AMCG00018908 NA coding downstream 758659 25136587 ~ 25144798 (+)
AMCG00018902 LOC103365013,LOC102776280 coding downstream 793557 25171485 ~ 25188842 (+)
G119308 NA non-coding upstream 5307 24357979 ~ 24367333 (+)
G119272 pitpnb,LOC107396064,LOC107653151,LOC107704163,LOC107706770 non-coding upstream 444008 23895027 ~ 23928632 (+)
G119234 NA non-coding upstream 1261120 23109601 ~ 23111520 (+)
G119231 NA non-coding upstream 1264040 23094566 ~ 23108600 (+)
G119178 NA non-coding upstream 1377450 22994976 ~ 22995190 (+)
G119315 NA non-coding downstream 8668 24386596 ~ 24425356 (+)
G119324 NA non-coding downstream 81353 24459281 ~ 24522664 (+)
G119354 NA non-coding downstream 159738 24537666 ~ 24599014 (+)
G119359 NA non-coding downstream 187784 24565712 ~ 24568984 (+)
G119416 NA non-coding downstream 422022 24799950 ~ 24835709 (+)
AMCG00018820 NA other upstream 2474940 21848370 ~ 21897700 (+)
G118815 NA other upstream 3183394 21187956 ~ 21189246 (+)
AMCG00018802 dnah10,LOC102798403,LOC105907537,LOC105907538 other upstream 3600054 20723610 ~ 20772586 (+)
AMCG00018800 ddx55,gtf2h3,eif2b1 other upstream 3677446 20679280 ~ 20695194 (+)
AMCG00018792 LOC106928543 other upstream 3769325 20601956 ~ 20603315 (+)
G119507 NA other downstream 856154 25234082 ~ 25267781 (+)
AMCG00018913 NA other downstream 1088163 25466091 ~ 25485446 (+)
AMCG00018922 med13l other downstream 1300749 25678677 ~ 25718426 (+)
G119762 NA other downstream 2082692 26460620 ~ 26461227 (+)

Expression


Co-expression Network