G119416


Basic Information

Item Value
gene id G119416
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 24799950 ~ 24835709 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU149685
GCAGTGCTGTCAGTGATGGCCTTGTGTGTGGAAAGTGTGAAAGGAAGGGAAAAGACTGACTGCATGTTTCAGAGTACTGCCTTCCCAGACCATCAAACACTCGTCCTCAGACTTAAGTCTCATCAACAAACTCACTCAGATCACATTGAAACATACTCACAACACTCTTGCCCATTAAAGGACAGTTTGAAATCAAAACCAGGCTCTGATTATGGAGTCTTTGTGATATAATTTAGGACCTCCCGAGATCTCAGACAAATCCCGTCTCCTAGCCAATGATATGTCAATGTTACGTCACCACAGGACAATCCAGGACACAGCAGAATGTAAAACTCGAGCCCTGAGCTACAGACCGACAGTGAGCGTTACCCTGGCGACGGTGTGGGGCCGGTCTGTGGGAAGCTGCGTTTATGGTCCTCAGGGCAGGGTGGGTGTACACCCCGGACACCAGGCTCCATCGATCTCTGAGGCCTCCTGATCTGGGTGCTGGAGTGGGCCTCCCTGCTAGAAAAGGTGTCCTGGGGCTCTGGTTTCCAGCGCTCTCTGGAGCCCACCGTCGCCTTGCCCAGCTTCTCTCTGGCTGGGGCCACCAGGGCCGTGGGCCTCACTGTCACCCGCTCCAGGGCCTCAGGGACCAGGTCAGCTGTCAGCACAGAGCAAGGGAAAACAAGGGAGGTCCGAGATGATAGTCAAACATGCAAAAGAAGCCCAAGCCTAAAAAAATtggaaattgaattgaaattgaagcttGACAATCATCTATTCTTGTGCTAAACAAATTCAGACTCGCCGATTACTACTCTACCTGGCTCAATGCTACAACTGCTCAGAGCGCACCAGCTGCACATCTCACACGCACACGTCCTCGGAAACACGCCAAGCACCCCCCTTTCAATCTGTTAGCACGAGATGTGAACAGCAAACATATTGTGCCAGGATCAGGCCACCACAAGCAGATGAGGCATTGAACTGCAACCAAGCCAATTTCAGAGGTGCTTGGCAAATCGTGGTGCCTCTGGGCCAACTGACTATACACAGGCCACAGCTGAATGATATCCAGGCTTTTGGGCAAATCCCAGGAGCATCTGACCTCCTAAACCAATGACTTTACGGCCAAAATTGGTTTTACAGTACAGCAGTTTCTCAGGCTCTGAAGAAGTCTTCAAATAGTGATTACTGGCACATATAATGACCAGGTGTTCAGGTGGAAGAAACCCAAGTGGCACTCCAAGCACAGCACTGGCCCTTCAAGTCAAGAGACTGCACACTCATCAGAGCTCAAACGCGCACTGCTGTGTGGCATTTCTCACCCTGGTGTCGCAGGCGTGGCCTCAGCAGGTCTGGAGGGCTCTGTTGCGTGTTGTCCACTTTGGGAGGAAGTGCTGTCCGGGCAGAGGGCTTCTCCACGGGGTAAGCAGTTCCGGGACGGAAGCCACATTTGTCCTGGAAATTTCACAAACAAGATCAACACTGACTCTTCCAAAATACTGTTGAACCCGGTTACACAGGAGTCTAAGAAACTCTTAGTGGTGTCATCTAACCTAGTGAATAAGTGTCAGCAGATTCAggattaaaacaatgtttttcttgatCAGAAGCAGCAGCATATACTGAACACCACAGATCCTGTGAAGACAAACTGGCCCTTCGTACACCTGCCAGGGACGTACCTGGTGATGAAAGACGACGTCCTCCTCGAGGGTGACTCCGCAGAACTCGCAGGGGATGAGAACGGCACCCTCTTGTGGCTGTAGAGGAGGGCTGTGGGACAGGGAGGAGGCGTGGCGAGGCGGgctgggggggctgggggggctgtAGGAGCGGTAGAGAGGCCCCTGCCCACCCCGAAAGGGCCAGTCATCTTGAAGAGGGGAGGGGGCTCTCTTACTGAAGGAAGCAAAGGCACTAGCAGGGCTGCAGCCAGTCTGCAAGCAAAACAGGAAGACATTTACATAGCAATACCAGACTtaagcatttattaattttcttaaaattgCATGGCCCAGGTTGTGCTGTTTGGTGTGTTGTTCCTGTATCATTCCCTGGGTACCCTTGTTGGTGAAACTTCTACggcacttttgttttaaaagcgaaaatataacaaatacatatacagtgagggaaaaaagtatttgatcccctgctgattttgtacgtttgcccactgacaaagaattttaatggtaggacagacagacagaataacaacaaaaaaatccagaaaaacgcatttcaagaAAGTTATAAANNNatttgcctgttaatgagggaaataagtatt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU149685 True 2281 lncRNA 0.50 2 24799950 24835709

Neighbor

gene id symbol gene type direction distance location
AMCG00018886 selenom,selm,LOC103043669 coding upstream 86422 24709674 ~ 24713528 (+)
AMCG00018876 NA coding upstream 422022 24372640 ~ 24377928 (+)
AMCG00018850 gucd1,LOC106585462 coding upstream 1929177 22862980 ~ 22870773 (+)
AMCG00018853 NA coding upstream 1964866 22820669 ~ 22835084 (+)
AMCG00018852 NA coding upstream 1984087 22807605 ~ 22815863 (+)
AMCG00018899 NA coding downstream 248467 25084176 ~ 25090285 (+)
AMCG00018897 LOC106585468,LOC104958862 coding downstream 255422 25091131 ~ 25117419 (+)
AMCG00018908 NA coding downstream 300878 25136587 ~ 25144798 (+)
AMCG00018902 LOC103365013,LOC102776280 coding downstream 335776 25171485 ~ 25188842 (+)
AMCG00018901 LOC103152401,LOC106931442,LOC103469522,LOC102221826,LOC101074150,LOC101161315,LOC105014186,LOC106579958,LOC103397036 coding downstream 367963 25203672 ~ 25213155 (+)
G119354 NA non-coding upstream 200936 24537666 ~ 24599014 (+)
G119359 NA non-coding upstream 230966 24565712 ~ 24568984 (+)
G119324 NA non-coding upstream 277286 24459281 ~ 24522664 (+)
G119315 NA non-coding upstream 374594 24386596 ~ 24425356 (+)
G119308 NA non-coding upstream 432617 24357979 ~ 24367333 (+)
G119429 NA non-coding downstream 15127 24850836 ~ 24851050 (+)
G119523 NA non-coding downstream 467477 25303186 ~ 25313495 (+)
G119529 LOC108239856,LOC103139559,LOC107385499,LOC103366907 non-coding downstream 495681 25331390 ~ 25338189 (+)
G119574 NA non-coding downstream 650136 25485845 ~ 25488149 (+)
G119669 NA non-coding downstream 1203570 26039279 ~ 26078413 (+)
AMCG00018820 NA other upstream 2902250 21848370 ~ 21897700 (+)
G118815 NA other upstream 3610704 21187956 ~ 21189246 (+)
AMCG00018802 dnah10,LOC102798403,LOC105907537,LOC105907538 other upstream 4027364 20723610 ~ 20772586 (+)
AMCG00018800 ddx55,gtf2h3,eif2b1 other upstream 4104756 20679280 ~ 20695194 (+)
AMCG00018792 LOC106928543 other upstream 4196635 20601956 ~ 20603315 (+)
G119507 NA other downstream 398373 25234082 ~ 25267781 (+)
AMCG00018913 NA other downstream 630382 25466091 ~ 25485446 (+)
AMCG00018922 med13l other downstream 842968 25678677 ~ 25718426 (+)
G119762 NA other downstream 1624911 26460620 ~ 26461227 (+)

Expression


Co-expression Network