G119529 (LOC108239856,LOC103139559,LOC107385499,LOC103366907)


Basic Information

Item Value
gene id G119529
gene name LOC108239856,LOC103139559,LOC107385499,LOC103366907
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 25331390 ~ 25338189 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU149822
AAAGTGCCGAGATCATTTATTGTACAAGTTTAATTTTGAACTTCCAGAAACGGTTTGTGTTTGTCCTCTCTtgggaaaatgaaacaaaacggaatatacaaacaaacaaaaacaaaataacactaaATCCAAACcccataaatatgtatatctaGTGATATGCAATAAGTGGCAGAGGATTGTAACTCACAGTATTACAGTCAAGACGTCAATGAAGATCTGTAGCTGCAAGCAGGCAGTAAAGAAAGCGTTCTGTCATTTACAAGGTGGCTAGACTGAGATTGATCATTGGAGCAGCAGAGGGAGTACAGGGGAGTGGATACTGGGTGAGAGTGGTATCGGGGGGGGCAACTATGTTAGGATAGAGGAAAGTGGCACAGATAAGGTAGGAGGGGGGTTAACACAAGGGGCCAGCGCTCTATTCTTGATCTTTGTCCTCTCCGTGCGTGATGATGTAGACCAGGTTCTTGTAGTCGAGGTTACCAGCCACATCTGGAGGGAAAGCTGTGAACATCTGTTCCATCTCTTCGGTGGAGAATCTGTCAGCTTGGGTTGTCAGCATCTCTGTAACATAATCCTTCTTCAAAACTCCTTTGGCCTCTGGGTCAAATACTTTGAATGCATTCAGAATGGTCTCCTCAGGATCAGCACCTTTTAGCTTTTCACCGAACATAGTTAGAAAGACCGTGAAGTTGATTGGTCCAGGGGCCTCCTTCAGCATCTCATCAATCTCCTCCTGTTTCACATTCAGTCGGCCAAGAGCTGCGAAGGTGTCCCTCAGGTCGTTCTTGTCAATGAAGCCGTCTCTATTCTGATCCATTATGGTGAAAGCCTCCTTAAACTCCTGTATCTGGGCCTGCTCAAACATGGAGAAGACATTGGAGTTGGCTCCCTCTGCTCTCTTCTTTGCCTTTTTTGGTGCCTTGCTGGAGGTGTAACAGGACAAAGAGGAACTTCCCAGCTGCTGCTCAACAATGGGGCGTCTGGGTGGGGTGGAATTATATATCGCCCCGATGCCCCTGTCAGCAGGGTTATAAATAAACGTTGCCTTCTTTAGTCACTGACAGGTAAAATATGTCCTGTCCAAG

Function

NR:

description
PREDICTED: myosin regulatory light chain 2, ventricular/cardiac muscle isoform

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU149822 True 1088 lncRNA 0.46 7 25331390 25338189

Neighbor

gene id symbol gene type direction distance location
AMCG00018909 NA coding upstream 37233 25287408 ~ 25294157 (+)
AMCG00018900 NA coding upstream 70108 25245645 ~ 25261282 (+)
AMCG00018901 LOC103152401,LOC106931442,LOC103469522,LOC102221826,LOC101074150,LOC101161315,LOC105014186,LOC106579958,LOC103397036 coding upstream 118235 25203672 ~ 25213155 (+)
AMCG00018902 LOC103365013,LOC102776280 coding upstream 142548 25171485 ~ 25188842 (+)
AMCG00018908 NA coding upstream 186592 25136587 ~ 25144798 (+)
AMCG00018915 NA coding downstream 195914 25534103 ~ 25544880 (+)
AMCG00018914 NA coding downstream 217267 25555456 ~ 25582394 (+)
AMCG00018918 mtfp1,LOC102779258 coding downstream 246127 25584316 ~ 25592691 (+)
AMCG00018919 NA coding downstream 263730 25601919 ~ 25611337 (+)
AMCG00018921 med13l coding downstream 290548 25628737 ~ 25642468 (+)
G119523 NA non-coding upstream 17895 25303186 ~ 25313495 (+)
G119429 NA non-coding upstream 480340 24850836 ~ 24851050 (+)
G119416 NA non-coding upstream 495681 24799950 ~ 24835709 (+)
G119419 NA non-coding upstream 521571 24807747 ~ 24809819 (+)
G119354 NA non-coding upstream 732376 24537666 ~ 24599014 (+)
G119574 NA non-coding downstream 147656 25485845 ~ 25488149 (+)
G119669 NA non-coding downstream 701090 26039279 ~ 26078413 (+)
G119682 NA non-coding downstream 769280 26107469 ~ 26107849 (+)
G119684 NA non-coding downstream 774683 26112872 ~ 26113131 (+)
G119703 NA non-coding downstream 938196 26276385 ~ 26276585 (+)
G119507 NA other upstream 63609 25234082 ~ 25267781 (+)
AMCG00018820 NA other upstream 3433690 21848370 ~ 21897700 (+)
G118815 NA other upstream 4142144 21187956 ~ 21189246 (+)
AMCG00018802 dnah10,LOC102798403,LOC105907537,LOC105907538 other upstream 4558804 20723610 ~ 20772586 (+)
AMCG00018800 ddx55,gtf2h3,eif2b1 other upstream 4636196 20679280 ~ 20695194 (+)
AMCG00018913 NA other downstream 127902 25466091 ~ 25485446 (+)
AMCG00018922 med13l other downstream 340488 25678677 ~ 25718426 (+)
G119762 NA other downstream 1122431 26460620 ~ 26461227 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_029788 myl2a coding NC_007116.7 CM002889.2 1589458 ~ 1611199 (+)