G116546


Basic Information

Item Value
gene id G116546
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 11728809 ~ 11818089 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU145974
aatatatatatatatatatatatatatatatatataaaataaaaagtgtcaaATTATGTTCAGTGAATTTCTTGCATACAAAGTGGTCAGATTTTATGTGAACCTTAcagtattgtaaaaaaaaaaaaaaaaaaattaaacatgtttatatattattttgtgtcttttctaAACTGATGATGCAATCTGGGTTTTTGCATGAACTAACGACTGTGATTGAAATATTTGGCCTTTTCGTGCTTTAATGATTCCCTGCTGTTGTGTGTGCTTTGTACACTTTTCACTCCAATGCTGTTTCTGTGCCAAAgtattttccagaaaaaaataaaaaaggaaaacaaaattcaatAAACTTTAAGATGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU145974 True 363 lncRNA 0.26 2 11728809 11818089

Neighbor

gene id symbol gene type direction distance location
AMCG00018470 NA coding upstream 50682 11677762 ~ 11678127 (+)
AMCG00018467 NA coding upstream 90759 11619373 ~ 11638050 (+)
AMCG00018468 NA coding upstream 122457 11595921 ~ 11606352 (+)
AMCG00018464 NA coding upstream 202014 11515955 ~ 11526795 (+)
AMCG00018462 grid2ip,LOC108274076,LOC108432200,LOC106589205 coding upstream 214467 11488147 ~ 11514342 (+)
AMCG00018471 cacng3b,LOC107710002,LOC107590403,LOC107689612,LOC107719973,LOC107688095 coding downstream 37431 11855520 ~ 11900247 (+)
AMCG00018476 NA coding downstream 138140 11956229 ~ 11966330 (+)
AMCG00018475 NA coding downstream 149800 11967889 ~ 11987054 (+)
AMCG00018478 tnrc6a,LOC107601257 coding downstream 255016 12073105 ~ 12116828 (+)
AMCG00018477 dctn5,LOC107579625,LOC107590401,LOC107719975,LOC105899917 coding downstream 333300 12151389 ~ 12163807 (+)
G116479 NA non-coding upstream 313071 11415481 ~ 11415738 (+)
G116477 NA non-coding upstream 316739 11410805 ~ 11412070 (+)
G116374 NA non-coding upstream 645020 11061569 ~ 11083789 (+)
G116358 NA non-coding upstream 749124 10977022 ~ 10979685 (+)
G116354 NA non-coding upstream 989634 10738286 ~ 10739175 (+)
G116601 NA non-coding downstream 308361 12126450 ~ 12126699 (+)
G116603 NA non-coding downstream 320913 12139002 ~ 12142135 (+)
G116653 NA non-coding downstream 454500 12272589 ~ 12273496 (+)
G116654 NA non-coding downstream 460341 12278430 ~ 12278840 (+)
G116667 NA non-coding downstream 469480 12287569 ~ 12319488 (+)
AMCG00018449 msrb1,LOC107376545,LOC105933050 other upstream 472644 11252359 ~ 11256165 (+)
AMCG00018422 NA other upstream 1436548 10257805 ~ 10292261 (+)
AMCG00018406 NA other upstream 1682286 10044452 ~ 10046523 (+)
AMCG00018405 NA other upstream 1716136 10004273 ~ 10012673 (+)
AMCG00018380 NA other upstream 2115891 9606661 ~ 9612918 (+)
G116585 rbbp6,LOC107689611 other downstream 148158 11966247 ~ 11970778 (+)
AMCG00018493 prpsap2,LOC107737786,LOC107581734,LOC107720040,LOC107654541 other downstream 671378 12489467 ~ 12500054 (+)
AMCG00018491 slc5a10 other downstream 684934 12503023 ~ 12520331 (+)
AMCG00018498 NA other downstream 725456 12543545 ~ 12611879 (+)
G116832 NA other downstream 1435254 13253343 ~ 13255794 (+)

Expression


Co-expression Network