AMCG00019057


Basic Information

Item Value
gene id AMCG00019057
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 1783777 ~ 1831277 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019057
ATGGAGAAGCTCTATTGGCATGATGAAGTGacatcctctccctctctcccccagccCTTTTTCCGGCTCCTGAACCTGCGGAAGCTGGGCCTAAGTGACAATGAGATCCAGAGGCTCCCCCCAGAGGTCGCCAACTTCATGCAGCTGGTGGAGCTCGACATCTCGCGCAACGACATTCCTGAGATCCCGGAGAGCATTAAGTTCTGCAAAGCACTGGAGATCGCAGACTTCAGTGGAAACCCCCTCTCAAGacTCCCTGATGGGTTCACTCAGCTGCGCAGTCTGGCTCACCTGGCCCTCAATGATGTCTCTCTGCAGGCTCTGCCCAACGACATCGGCAACAAACCTGGTCACACTGGAGCTGAGGGAGAACATGCTGAAGGCCCTGCCCACccGGACACTCTGGGCGCTCTACCCAACCTACGGGAGCTGTGGCTCGACCGCAACCAGCTGTCCTCCTTGCCACCGGAGTTGGGGAACCTGCGCAGGCTGGTGTGTCTGGACGTGTCCGAGAACAGGCTGGAGCAGCTGCCCCCCGAGCTCAGCGGCCTGCTGGCCCTCACCGACCTGCTGCTGTCCCACAACCACCTGGACACGCTGCCCGACAGCATCGGGTGCCTGAAGCAGCTGTCCATTCTGAAAGTGGATCAGAACCGGCTGACCCATTTGACAGACTCCATAGGGGACTGTGAGAACCTGTCCGAGCTCATGCTGACGGAGAACCTGCTGCAGACGTTGCCCCGCTCCCTGGGGAAGCTGAAGAAGCTGACAAATCTGAACGTGGATCGGAACCGGGTGTGCGCCGTGCCGGTGGAGCTGGGCGGCTGCGCAGGCCTGAACGTCCTGTCCCTACGAGACAACCGCGTGGGCCGCCTGCCCGCTGAGCTCGCCCACGCCACCGAGCTGCACGTGCTGGACGCTGCAGAACCTGCCCTTCGCCCTGACCAACCTGAGCCTGAAGGCACTGTGGCTGGCGGAGAACCAGTCTCAGCCCATGCTCAAAACCTGCTGCAGAACAGTGTGGACGACAGCTGGACAGACAGCAACCTGAACCGGGTCAGTGTGATCCAGTTCCAGGAGGAGGCCAAGccagaggaggaggacgaggagacGGCCGCGGAACGAAGGGGTTTGCAGCGCCGCGCCACGCCTCACCCCAGCGAGCTTAAGGTGATGAAGAAGGTGATCGAAGAGCGCAGGAACGAGGCCTACACTGCCCGGCCTGACGGCGACGAAGACACGCCCGACAAGGAGGACAAGCGTCTGAGCGGACTGTCCAATCAGAGCCAGGACTCCGGGGCCTCCAACAGCACTGCCTCCGCTGGCTCCCAGGAAGAGAGGCGGGGCCACTTCGTCACCATAGCAGTGCCAGGAGACCAGTCTCCGGAGGGACGGAGGGAGGAGCAGGAAGACGAGGGGCTGGATGACGAGATGGAGGTGGAGTATATCGAGCCCACGGTCCACTTCGCCGAGGAGCCCATCATCCAGGGGGGCGAcgacgaggacgaggacgatGAGGGGGGGCCCCGGAGCGagggagaagaagaggaggaggaggaggagaggcgCAGGCAGTTGGTGGCCCCAGCCGAGAGGCAGCGGCTGATCCGCAAGGACACCCCCCATTACAAGAAGCACTTCAAGATCACCAAGCTGCCCAAGCCCGAGGCCGTGGCCGCCCTGCTGCAGGGGCTCACTGCAGAGGGGCTGCCCCTGCCAGACCACCAGGACGAGGAGCCCAGGCCGGGGGGGGCGGGGCTCCAtctccagctccaggccggGGGACACCAGCAGCCACCGCCGCCAGGGGACGATAGCGAGAGGGACGAGAGCCGCCTGAGCGACCGCGTCAACTGCTCCCTGCAGCCCGTCAAGCTGACGCTAACAATCCTGAGGCAGACTGGGGGCTTGGGCATCAGTATTGCGGGGGGGAAAGGCTCCACACCCTACAAGGGGGACGATGAGGGCATCTTCATCTCCCGGGTGTCTGAGGAAGGGCCCGCAGCTCGAGCCGGAGTCAAAGTCGGGGACAAACTCTTGGAGGTGAATGGGGTGGACCTGTGCGAGGCGGAGCACCACCGGGCCGTGGAAGCGCTGCGCAGCTCGGGCGCCGCCGTGTCCATGAACGTGCTGCGGGAGCGCATGGTGGAGCCCGAGAACGCCGTGACCACCACGCCGCTGCGCCCCGAGGACGACTACCACCCCCGTGAGCTGCGCGGCTGCCTGCCCCTCGGGCCCCTGTCCCCCGACAGCCCCGGCACGGCCGGCCAGCGCCTGTCCACCTGCCTGGTGCGCAACGAGAAGGGCCTGGGCTTCAGCATTGCCGGCGGCAAGGGCTCCACGCCCTACCGCACCGGGGACACGGGCATCTTCATCTCGCGCATCGCGGAGGGTGGGGCGGCCCACAGAGACGCCACCCTGCAGGTCGGAGACCGTGTCCTGTCGATCAATGGTGTAGACATGACAGAGGCCAGGCATGACCAGGCAGTAACGCTGCTTACTGGCTCCTCCCCCACCATCACCCTGTTGGTGGAGCGTGACCTGGCGCCGCCCCCGGCAGACAGCTCCGTCCTGGGGGGGTCCCAGGGGGGCTCCCCGGCACTGGCCCGAGCCCGGCCCcactcccccccgccccccgagCCCTGCGACACCCCCGAGCAGGAGGAGCCGAGCGAGGACGGGGACTCCCCGACGGGCAACCACCTGAGCCGGCCCCTGGAGGACGAGTACCCCATCGAGGAAGTGATGCTGGTCAAGGCAGGCGGCCCCCTGGGGCTGAGCATTGTAGGAGGCAGCGATCATGCCAGCCACCCCTTCGGCATCAGCGAGCCAGGGGTCTTCATCTCTAAGGTGATCCCGCAGGGCCTGGCAGCACAGAGCGGGCTGCGCGTGGGCGACCGCATCCTGGAGGTGAACGCCATCGACCTGCGCCACGCCACCCACCAGGAGGCTGTGCGCGCCCTGCTGTCCAACAAGCAGGAGATCCGTATGCTGGTGCGCCGGGACCCCGCGCCCCCGGGCATGGAGGACATCGTGATAGAGAAACTGCCGGGTGAGAAACTGGGCATCAGTATCCGCGGGGGGGCCAAAGGTCATGCGGGCAACCCCTTCGACCCCTCAGACGAGGGCATCTTCATCTCCAAGGTGAGCTCCAGCGGGGCGGCGGCTCGGGATGGGCGTCTGAGCGTGGGCCTGCGCATCCTGGAGGTGAACGGGCACAGCCTGCTAGGCATGACACACGGCGAGGCGGTGCGGACGCTGCGGGGCGTGGGCGATACGCTGGCCGTGCTGGTGTGCGAGGGCTTCGACCCCAAAGACGCTGCCACCATCGAGGAGGTGGAGATGGTGCGCGAGGCGTCTCagtgggagaaggaggagatggagaaagTGAGCTTCGGCACCACGCCTCTGAAGCTGGACTACAAGACCCTGGCAGCTCTGcccaccaccagcctgcagaAAGTCAACCGGCTGTATCCCTGTGCCGCGCTCACTGCCCCAATGGAGGCCCCCCCCCAGACCCACATCAGCGCCCCCTTAGAGCCCCCGGCCTATAATATCGGGGGCCCTCCCGGCAGCAGTAGCTTCTTCCAGGTGGAGTCTCACATCCTCAGTCCCCCCGCCCTGCCCCTCagccccccccagccctgcccCGTCTCCCAGACAAGGACTTTCCTGCAGGAAACCAGGCCCCTGTGCCCCCCAGTGCCACTGGTCCCCCAGGCTTCCCACAATCCCCTGCTGCTGGTTGAGCCGCCCACCACAGCCCCACTGGAGGTGCCCCGCCCTGCCCCCGTGGCCGCGGAGGGAGAGCTGGAGGAGAGCCTGGTCGACTCCCAGCCCATTTGCTTCAGTGAGAACCCTTTCCTGGTGGCCAATCGCAGGGGCAAGGGGAAGCCCCCCCAGGAGCGCATCCTGTCTGGCCCCCCTGGGTCCTCCTCGGAGCCTATGGTGGCGAACAGCCCCAGCCGTGATGCACCCTACTCCCCCACCTCGCAGCCGctaccccctctctcctcctcctcctcctcctccgcccccGCTCACGTGGCTGGTGGGAGGGAGACTCGTTTTgccAAAATTCATTTCCTCTCCAGCGCTGCTCCCAGAGAAAGCAAATCAACCAAGCCCGGCGTGATCCAGCCCTTGTCTCGGATGCGACAGAACGCTCCGGCAACCAATCAGGAAGGCCGCAGCAGTCCCAACCCCTTCCAGCATGGCCCCCCCCCAACCGAGACGCATGCCTCTCCAGGTgccccctccccatctctcttgCCCAGCGAATTTCCCGTTAACGTCAAGCAGGCCTACAAAGCCTTCGCAGCCGTCCCAGTGAGCCACGCCCTGCTGGACAAGCCTCAGGAGCCCTTCATCCAGAGGAACAACGTCCTGCCGAAGCAGCCCTCTCCTGAGCCGGAGCTGGAGAATGACGTGTTCGCGGACGACGAGCAGAGAGGGGCAGAGCGGGAGAGGGGCAGGGGAGTCGCGGGGGTGACCCGGGCGACTCTTTGCCCCACACCCCcgtccccctcctctccccgcCAGCCCCTGGGCTCTGACAGCGGGGACCCCTCCTCTCATCGCCGGGAGTATCTGAGCCTGGCCGCCGTGCCCCGCCTCTCACGGCCCTCCCTGGAGCTGCAGGTGCCCTCCCCCTCTGGCCGGGACAGCCCCGAGCAGCGCTCCTTCAGGGACAGACAGAAGTACTTCGAGATCGACGTGAAGCAGCAGACCCCCGACAGCAAGCCCCGCCCCCGCGTCTCTCTGGTCGGGGAGGACGACCTGAAGAAGATGAAGGAGGAGGAAGCGAGGAAGATTGAGCAGCGTGCAAGAGACCTGGtcgaggaggaggaagaggaggaggaggaggacctGGCCAAGCAGATGGCGGAGATGAAGGCCCAGGGGAAGGTGGTTATCGACGGGGTGGAGTACAAGATCGAGAGAGTGGACGGGCGCGGCGCCAGCTCCCCCAGCACAGGGTTGTCCCAGTTTGATGCAAGGGCCGACTCCCAGAGGAACTCACTGGAGGACGGCTTCAGGCCCGGCTCCATGACTGGGCTGAGCCCAGTGTACCCGGGGGAGCCCGGCGCCCCGATCCGCACAGCCAAGGCAGAGAGGAGGGCGCAGGAGCGGCTGCGCATGCAGAGCCCGGAGCTGCAGCTGCTGGCTGCGCAGGATAAGGACCTGCCTCGGGGGCTGGAGGACGATGTCAGGCAGTATGAGCAGGACTTGGCCAAAAGGCTGTACCAGTCTCGACAGAGGGCCTCGCTGGGCACTGCTGCCCCCGGCGGCCTGCCCGCCACCACCGGCCACCACAGgatgaAGTCTCTGGAGCAGGATGCTTTGAAGGCCCAGATGGTGATCGCCAAGTCCAAGGAAGGCAAGAAGCGCGGCACTCTGGACCAGCTGACAGAGTCGCCCTCGCCCGCCCCCACGCCCTCGCCTACTCCCGTGGAAGACTACAACCCGAGAAGTGTGACATCACCGGGAAGACTGTCCCTGTCGGAAAAGAAGTTTGACTACCGACAGTTCGCTGCAATTCCTGCTTCCAAACCTGTATACGACATCCAGTCTCCGGACGTGGCTGAGGAGCTCCAGTTCATAGACGACGGCTCGGCCAGTCCAGcGCCCCCTGCAGATCTGGAGGCCGAAGGGCACgtccccctccccaccacctCCACGCTGGAGGAGATGGCGCTCTACAGCAACAAGAGGAAACTGCGGCACGGCCGGCGCAGCCTGGAGACCGCGGTGCCCACGTAACGCCTGCGTGGGGGACATGGATCAgacacacgcatgcacgcacacacgcacacacacggcAAAACCTTCAACAGATATCAGTGGTGTGAGGGAGGGGGGCTCGCTTTTCTATATTAGACCACAGAATccattattgttgttattattattattattattaatcatttctttttcagtttgcGTTTTAGaagctgaattattttaaacggtgactaattacatttttgtgttttctgtttgttgttttgcagggGGGGGGTgtttcccctcctctctctctcgcctcttctttgatttgcttttcattaaaaaatttCACGATTTTAATATGCtgtggagaaagaaagaatgaaagaaaacaagtggAGACGCACACGATAGCTGTGTTACTAACTCTGtaaatctttttaaatattatttccgGGGGGGTTCTGTTGAATCGATTGTAATATTGCAGGGTTGTTTTCTCGTGGGGTGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019057 True 6244 mRNA 0.64 42 1783777 1831277

Neighbor

gene id symbol gene type direction distance location
AMCG00019054 NA coding upstream 21681 1761674 ~ 1762096 (+)
AMCG00019051 LOC106568618 coding upstream 25459 1745722 ~ 1758318 (+)
AMCG00019053 nrbp2,nrbp2a coding upstream 42951 1730895 ~ 1740826 (+)
AMCG00019052 NA coding upstream 125502 1644367 ~ 1658275 (+)
AMCG00019050 NA coding upstream 142727 1628825 ~ 1641050 (+)
AMCG00019056 klhl18,LOC107657445,LOC107733883,LOC107701005,LOC107730797 coding downstream 11511 1842788 ~ 1852369 (+)
AMCG00019060 NA coding downstream 144313 1975590 ~ 1980497 (+)
AMCG00019063 NA coding downstream 185869 2017146 ~ 2030576 (+)
AMCG00019062 NA coding downstream 199977 2031254 ~ 2034414 (+)
AMCG00019061 NA coding downstream 230440 2061717 ~ 2062756 (+)
G30939 NA non-coding upstream 202288 1581271 ~ 1581489 (+)
G30937 NA non-coding upstream 230915 1552644 ~ 1552862 (+)
G30910 NA non-coding upstream 367614 1415951 ~ 1416163 (+)
G30903 NA non-coding upstream 373819 1409471 ~ 1409958 (+)
G30887 NA non-coding upstream 473396 1310106 ~ 1310381 (+)
G30996 NA non-coding downstream 106543 1937820 ~ 1938218 (+)
G30943 NA non-coding downstream 207370 2038647 ~ 2083269 (+)
G31104 NA non-coding downstream 265904 2097181 ~ 2099152 (+)
G31117 NA non-coding downstream 345871 2177148 ~ 2177356 (+)
G31141 NA non-coding downstream 357691 2188968 ~ 2209189 (+)
AMCG00019046 NA other upstream 178232 1585825 ~ 1605545 (+)
AMCG00019033 NA other upstream 462284 1318622 ~ 1321493 (+)
G30877 arhgap39,LOC106560380,LOC106584197 other upstream 530042 1253366 ~ 1253735 (+)
AMCG00019030 NA other upstream 546140 1213676 ~ 1237637 (+)
AMCG00019029 NA other upstream 584682 1197986 ~ 1199095 (+)
AMCG00019064 NA other downstream 30552 1861829 ~ 1885551 (+)
G31110 NA other downstream 310553 2141830 ~ 2147563 (+)
AMCG00019089 NA other downstream 688827 2520104 ~ 2618052 (+)
AMCG00019096 LOC107727496 other downstream 1263175 3094452 ~ 3100171 (+)
AMCG00019100 crem,crema,LOC105019435,LOC106578540,LOC108428923,LOC103396770 other downstream 1359335 3190612 ~ 3210890 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000026_12486292_12534245 SCRIB coding CI01000026 null 12485886 ~ 12534327 (+)