AMCG00019136


Basic Information

Item Value
gene id AMCG00019136
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 5269238 ~ 5278716 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019136
ATAGCGCATGTGTACAGCAGAGCCGCTGCTGCTGCGCGTATTCACGGACAGCACATCCGGAGAAAACGCATAAAGCTAATCAACTAattgtgcagtttgtgtgctTGTCGATGGCCACCACCGTCATTTATCTGCTCAGGAACGACCTACGCTTTCACGACAACGAgGTGTTGCACTGGGCTCAGAGAAATGCCGAACACATTGTGCCCCTGTATTGCTTTGATCCCAGACACTACCTGGGTACCCACTGCTATAACTTTCCAAAGACTGGCCCCTTCAGGCTCCGTTTTTTACTGGAAAGTGTGAAGGATCTGAGGGAGACATTACAGAAGAAAGGCAGGAATCTCCTGGTAAGGAAAGGGAAGCCAGAGGACGTTGTTGGTGATCTCATTAAGCAGCTGGGATCAGTAAGCGCTGTGGCTTTCCACGAGGAGGCGACAAAAGAGGAACAGGATGTAGAGAAGGCATTGAAGCAGGTGTGTTCCCAGTTTAAAGTCAAAGTTCACACCTGCTGGGGGTCAACACTTTATCACCGGGAAGATTTGCCCTTCAACCCTATTGCCAGGCTCCCAGATGTCTATACTCAGTTCAGGAAGGCGGTGGAGACTCGGAGCCGAGTGCGACCCACCATCACAATGCCTGAGCGCCTGAAGCCCCTCCCACTAGGTCTGGAGGCGGGGTCTATCCCCTCACCTGAAGATTTAGGccagacagATTGCCTGTCAGACCCACGTACAGCTTTCCCCTGCAGTGGGGGTGAGACGCAGGCCTTGGCACGGCTGAAATATTACTTCTGGGACACTAATTTAGTGGCATCCTACAAGGAGTCTCGCAACGGGCTGGCCTTAGGCTGTATATCCCCCAGGTACATTTATGAACAGATCAAGAAGTATGAGAACGAAAGAACGGCAAACCAGAGCACCTACTGggTCATCTTTGAGTTGCTCTGGAGGGATTACTTCAGATTTGTGGCAAAGTCTGTGCCCTGGAAGAAAGACAGTAAACTTTTTGACGCATGGAAAGAAGGCAGAACAGGTGTCCCATTTGTAGATGCCAACATGAGGGAGCTGGCGCTGACCGGCTTCATGTCTAATAGGGGGCGGCAGAACGTGGCCAGCTTCCTAACTAAGGACTTGGGGCTGGACTGGAGGATGGGGGCCGAGTGGTTCGAATATCTCCTGGTGGACTTTGATGTGTGCAGCAACTATGGAAACTGGCTGTACAGCGCTGGTATAGGAAATGACCCCAGAGAGAACAGGAAGTTCAATATGATCAAACAAGGCCTGGACTACGACAACAGTGGAGATTATGTGCGGCTGTGGGTCCTGGAGCTGCGGGGCATAAAGGAAGGAGATGTTCACACTCCCTGGACCCTCAGCAGTGCCGCCCTGGCCCACGCTGAGGTCTCTCTCGATGGGACCTATCCCTCGCCCATTGTCACGGCCCCAGAGTGGAGCAGGCACGTCAGGAACAAGCCAAGTGGCGGAGGAGGACCAAGTCAGAGAGGAAGAAAAGGTCCATCTCACTCCCCCAGACAGCACCGAGACCGAGGAATCGACTTCTACTTTTCGGGGAATAAGAAAGTGGACTGAGGGAACGGCTGGCCAGGGCTCCCACTGCTGTAGGTTTGGAGGGACATAGAAAAGGAGCAGCAGACAGTCAAAGTGGGCACAGGATGCTATGGCACCTACACACTGGCCTGCCTCCGGACTGTACTAAAATACAGCAAGGTTTATCTGTTTTATTAGTGTTGGTGAAGCTGCTaagttttgcatttatgttttcctgtttttttgtttcttttgttttgggcAGTCATGGTGGTGCACTACAGATATGACAGGAAAGATTACAAAAGgcataaacatatttatattcgggtttttttttaaagatgcatgttttttctgttatttccgTTAAAAAATCTGTgagttgtatttgttgtttcttGCAGGACCAGATAAGCAACAATACAGTTATTACTCCATTCTGTGGTGACTGCAATGTtctctgtgaaatgtatttttaagtcaaaccaattattttgttattaaaaagcCTTCAATGCTGAA

Function

GO:

id name namespace
GO:0006281 DNA repair biological_process
GO:0003913 DNA photolyase activity molecular_function

KEGG:

id description
K01669 phrB; deoxyribodipyrimidine photo-lyase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019136 True 2075 mRNA 0.49 14 5269238 5278716

Neighbor

gene id symbol gene type direction distance location
AMCG00019135 myd88,LOC104955770 coding downstream 1594 5261715 ~ 5267644 (-)
AMCG00019138 NA coding downstream 25524 5236401 ~ 5243714 (-)
AMCG00019134 oxsr1,LOC107689410,LOC107695388,LOC107591273 coding downstream 66872 5177893 ~ 5202366 (-)
AMCG00019137 NA coding downstream 92294 5171620 ~ 5176944 (-)
AMCG00019130 NA coding downstream 262794 4989723 ~ 5006444 (-)
AMCG00019142 NA coding upstream 47325 5326041 ~ 5349514 (-)
AMCG00019144 NA coding upstream 112349 5391065 ~ 5405706 (-)
AMCG00019145 LOC103360289 coding upstream 141265 5419981 ~ 5436120 (-)
AMCG00019149 zbtb47,zbtb47b,LOC107701620,LOC107733141,LOC107754947,LOC107670424 coding upstream 303512 5582228 ~ 5588342 (-)
AMCG00019150 LOC104941974 coding upstream 356986 5635702 ~ 5671986 (-)
G31572 NA non-coding downstream 591171 4677643 ~ 4678067 (-)
G31558 NA non-coding downstream 661381 4607563 ~ 4607857 (-)
G31526 LOC106599727,LOC106569160,LOC102785278 non-coding downstream 903837 4365162 ~ 4365401 (-)
G31525 NA non-coding downstream 904194 4364196 ~ 4365044 (-)
G31523 NA non-coding downstream 908892 4360107 ~ 4360346 (-)
G31774 NA non-coding upstream 140280 5418996 ~ 5511930 (-)
G31784 gars,LOC107591252,LOC107754935,LOC107682953,LOC107584992,LOC107733158 non-coding upstream 261404 5540120 ~ 5540948 (-)
G31803 NA non-coding upstream 294081 5572797 ~ 5574265 (-)
G31825 NA non-coding upstream 471171 5749887 ~ 5752086 (-)
G31826 NA non-coding upstream 506052 5784768 ~ 5802915 (-)
AMCG00019128 gorasp1,LOC103377203 other downstream 282854 4941059 ~ 4986384 (-)
AMCG00019129 NA other downstream 328571 4932349 ~ 4940667 (-)
AMCG00019109 NA other downstream 1039247 4220443 ~ 4229991 (-)
G31130 NA other downstream 3090588 2177980 ~ 2178650 (-)
G31082 NA other downstream 3185967 1932341 ~ 2083271 (-)
AMCG00019165 NA other upstream 1401909 6680625 ~ 6684301 (-)
AMCG00019209 LOC106600477 other upstream 3568435 8847151 ~ 8901878 (-)
AMCG00019213 NA other upstream 3972436 9251152 ~ 9434114 (-)
AMCG00019272 ppp4r1,LOC106579644,LOC106590337 other upstream 6573392 11852108 ~ 11885571 (-)
AMCG00019284 NA other upstream 7134438 12413154 ~ 12423320 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_023403 cry-dash coding NC_007135.7 CM002908.2 20194022 ~ 20208474 (-)