AMCG00019408 (dnajc5b,LOC107656153,LOC107586796,LOC107721861,LOC107663636)


Basic Information

Item Value
gene id AMCG00019408
gene name dnajc5b,LOC107656153,LOC107586796,LOC107721861,LOC107663636
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 19081719 ~ 19089121 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019408
ATGGCTGAACAAAGGCAACGCTCTCTGTCAACGTCAGGGGAGGCTCTCTACCAAGTTCTTTGCCTGGAAAAAGGCTGCACCCATGAGGACATAAAGAAATCATACAGAAAACTAGCTTTGAAATATCATCCAGACAAGAATCCTGAGAACCCCGATGCCACTGACAAATTCAAGGAAATAAACAATGCTCACTCCATATTGACAGATGTCACAAAGAGGAACATTTATGACAAATATGGGTCACTGGGCCTTTATGTGTCACAGCAGTTTggagaagaaaatgttaacaCATACTTCATGCTGTCCAGCTGGTGGGCAAAGATGGTGACACCCCCATTGCGCTTCAGCCAACCAGTGCAA

Function

symbol description
dnajc5b Is expressed in neuromast and otic sensory epithelium. Orthologous to human DNAJC5B (DnaJ heat shock protein family (Hsp40) member C5 beta).

NR:

description
PREDICTED: dnaJ homolog subfamily C member 5-like

GO: NA

KEGG:

id description
K09525 DNAJC5; DnaJ homolog subfamily C member 5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019408 True 360 mRNA 0.45 3 19081719 19089121

Neighbor

gene id symbol gene type direction distance location
AMCG00019401 bhlhe22 coding upstream 270027 18810880 ~ 18811692 (+)
AMCG00019397 LOC107666630,LOC107590209,LOC107586709,LOC107705256,LOC107721902,LOC107663693 coding upstream 420251 18607749 ~ 18661468 (+)
AMCG00019400 nkain4,LOC107724178 coding upstream 556621 18517139 ~ 18525098 (+)
AMCG00019395 LOC102793628,LOC103377196,LOC107098905 coding upstream 703664 18337551 ~ 18378055 (+)
AMCG00019393 chd7,LOC107585562,LOC107688517,LOC107718105,LOC107589837,LOC106568873 coding upstream 785498 18257809 ~ 18296221 (+)
AMCG00019406 trim55b,LOC107586797,LOC107705202,LOC107663638,LOC107656154,LOC107590338,LOC107721936 coding downstream 7615 19096736 ~ 19119509 (+)
AMCG00019411 rrs1,LOC106579528,LOC107590198 coding downstream 100158 19189279 ~ 19190313 (+)
AMCG00019407 adhfe1,LOC101480322 coding downstream 102456 19191577 ~ 19201678 (+)
AMCG00019413 sgk3,LOC107666631,LOC106579527 coding downstream 180688 19269809 ~ 19283732 (+)
AMCG00019414 NA coding downstream 251125 19340246 ~ 19366528 (+)
G33874 NA non-coding upstream 154432 18927047 ~ 18927287 (+)
G33812 NA non-coding upstream 498015 18576495 ~ 18583704 (+)
G33810 NA non-coding upstream 630316 18451133 ~ 18451403 (+)
G33809 NA non-coding upstream 630878 18450617 ~ 18450841 (+)
G33800 NA non-coding upstream 643454 18431364 ~ 18438265 (+)
G33913 NA non-coding downstream 118073 19207194 ~ 19209710 (+)
G34084 NA non-coding downstream 982215 20071336 ~ 20071564 (+)
G34086 NA non-coding downstream 986057 20075178 ~ 20078454 (+)
G34093 NA non-coding downstream 1006197 20095318 ~ 20096450 (+)
G34183 NA non-coding downstream 1543956 20633077 ~ 20635272 (+)
AMCG00019402 NA other upstream 60307 19005024 ~ 19021412 (+)
AMCG00019376 NA other upstream 1629060 17449320 ~ 17452659 (+)
G33406 NA other upstream 2999776 16043942 ~ 16081943 (+)
AMCG00019345 NA other upstream 3454764 15554819 ~ 15626955 (+)
G33283 NA other upstream 3911878 15164348 ~ 15169841 (+)
AMCG00019415 NA other downstream 196415 19285536 ~ 19294208 (+)
AMCG00019428 LOC107595150 other downstream 362126 19451247 ~ 19455137 (+)
G34170 rpl7 other downstream 1518353 20607474 ~ 20610889 (+)
AMCG00019475 march6,LOC105024238,LOC102207159,LOC101475102,LOC102312386,LOC104929871,LOC100690953,LOC102783154,LOC107746911,LOC107686038,LOC107732575 other downstream 3526502 22615623 ~ 22643226 (+)
AMCG00019481 NA other downstream 4096695 23185816 ~ 23204250 (+)

Expression


Co-expression Network