G34170 (rpl7)


Basic Information

Item Value
gene id G34170
gene name rpl7
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 20607474 ~ 20610889 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU42780
taaaactatacaaaatataaaattttcCTCCTAAATCCTGCACCATGATGCATGAAATGTGCCTTTTAAACCAAATATTAACgctaaattacacatttcaaatatattcttaattaaatttaagactattcaaatatgacattttaatttaagtttataATTGTATAGCACATGCATATACTGCACtctatgtttgtttgtaatggACAATGCTATGACAAGTGCTATATACACAAGTGCACTTTTATGAAGCACTCAGTTGATTCTAAATCTGTACTACCTTTCACAGACGCTACTGCAATGCAGATGCAAGTGCTATAATTTGGTTCTACATTTAAGCTAAATTAAcgacatttaaatgcacatagaaatgtgaatttcacaaCTTTAGATCTAATGAGAACCTTTATTTgcatttagaaaatacaataagcaattTTAGGGAGCTGTACAAAGACTTATGAAAATATAGTCTAATTGCATATCTCCTGCCACATAACATGAGGTGATAGACTAATGTTGGGCATGAAATTGACTTTGCTCACTTGTGCCACACTAGCTTTCTAACCATTTATGCCAATGAGGAAAAACCTAAGCGttcaacagtttaaaaaaaaaaaaaaaaaaaagtttaacaaaaGCAAACCCCTACAACTCAATTTTGACAACCACATCTTGTACAGCTTATGGCAGAACAGCCTTCCCACAAATCCATGTACACACCAACATTAACACACTGTACGATTAGGTTTTAGCCCTGTATGTCCTGTAGTCTAGCGCGTGCCTCACCGTGTGCGCTCAGTTCATCCTCCTGATCATTCTGTTGATCTGGTCCTCCCGGTTACCAGCATCACCTCCCTCCACAAAGTGCGTGGTCTTCTTGTTCATCCCACCTCTGGGAGAGGACAGTTTGAAGGGCCACAGGAAGTTGTTTGCTCCCTTGAAGTTCTTTCCAACTGTGTAGATTTCATGGATCAAGTCCTCCACACAGATGATGCCATATTTGCCGGCTTTTCTGAATCATGTCATTATCAGTGAGAGCAATGCGCTGCTTCCTGATCTTTCCATAGCCACGCTTGTAGATCAGCTCACGCACAGACTTCAGATTGGGGTTACCCCCATGCAATGTAGGGCTCTGCAATCCTGAGCATGTTGATGGAGGCCTTGTTCAGCTTCACAAACACCCCATTGAAGATCTGGCGCAGACGGAGGAGCTGCAGCACCTTGCGCACCTTGGGGCTGACGCCATTGATACCTGATCCTGATGACAAAAGCCAGTTTGGGTTCAGCGGGGACATAGTAGTTGCCAACTTTGCGGGCCATTCGGGACAAACGGATCTCACGCCTGTACATCTGCCTGTATTCCTTGTGGTACTGTTCAGCCCGCTTGTAGATGAGTTTCCGGGTCTTCTTCTCAGTCAGCATCTTCTTGATGCGCTGGGCCTTCATAGCCGCAAAAGCCTTTCGCTTTTTCAAAAGGCTCTCGGGCACTGCTGGGACCTTCTTCCCTCTaagacaaaacattaaaagcattttaaaaatggtgcaTACAAGAAATGCAGCAAATTGAGCTcgtaaaaaaaatcatttaactAAGAAAATCCTACAACCTCTTTGAACAGGCAACATCTCTCCCCATGTTCACGCGAAGGACTGTTTTGCCAACTCAAACGAACTCGGCTTTACACACGTAACTATGTATTAGGTCTATATAAGAcatatttgcttcacaaccaaCAATATGATAGTCGGGTAGATTGTCAAATGTCACAAGTGCAATGTGCAAATGTCACAATACAGACACAGCATTTCGGCATCTGTACGGAGATGTGCTTAAGACGCTCTACCTAAGCAGGCC
>TU42783
taaaactatacaaaatataaaattttcCTCCTAAATCCTGCACCATGATGCATGAAATGTGCCTTTTAAACCAAATATTAACgctaaattacacatttcaaatatattcttaattaaatttaagactattcaaatatgacattttaatttaagtttataATTGTATAGCACATGCATATACTGCACtctatgtttgtttgtaatggACAATGCTATGGAGCTGTACAAAGACTTATGAAAATATAGTCTAATTGCATATCTCCTGCCACATAACATGAGGTGATAGACTAATGTTGGGCATGAAATTGACTTTGCTCACTTGTGCCACACTAGCTTTCTAACCATTTATGCCAATGAGGAAAAACCTAAGCGttcaacagtttaaaaaaaaaaaaaaaaaaaagtttaacaaaaGCAAACCCCTACAACTCAATTTTGACAACCACATCTTGTACAGCTTATGGCAGAACAGCCTTCCCACAAATCCATGTACACACCAACATTAACACACTGTACGATTAGGTTTTAGCCCTGTATGTCCTGTAGTCTAGCGCGTGCCTCACCGTGTGCGCTCAGTTCATCCTCCTGATCATTCTGTTGATCTGGTCCTCCCGGTTACCAGCATCACCTCCCTCCACAAAGTGCGTGGTCTTCTTGTTCATCCCACCTCTGGGAGAGGACAGTTTGAAGGGCCACAGGAAGTTGTTTGCTCCCTTGAAGTTCTTTCCAACTGTGTAGATTTCATGGATCAAGTCCTCCACACAGATGATGCCATATTTGCCTGAAAAAGAAcatcaaaacaaattcaaagcTATTGCTTAATAAAGGGGGACTGGCGTCAAAAAGTGCATACATTCCAGTTTTAAATGCAGAGCTATATAAAGCTATGAGGATTAAACTCAGGACtataatcaaaaaataaagGCATGTTCCAGTCTATGGCATGCGTAAGCTGTTGCAAAGCACCTGAATGCACTGAAAACTGATACAACTTCCACATTACCTCACATTTACCCCACATATTAGGTAAATAATTTCCCTAGTGCAATGAAAAGGCCTTCACTACATGCAACATTTTCAAGTAGAACTTCATGACAAAGTTTACAGCAGACCTCTtttctacttttaaaaatataaccttttatataaaacattgagAACAGCAGGCAATCCCTGACAGAGTGGGATACACTTACCCAGGCTTTTCTGAATCATGTCATTATCAGTGAGAGCAATGCGCTGCTTCCTGATCTTTCCATAGCCACGCTTGTAGATCAGCTCACGCACAGACTTCAGATTGGGGTACCTGGGAAGACATGACATTATGAAATCACcaataaatatgtgaattacTAAGCGTTTCACTTATACAGCGACTATATGAAAGCTTGTGAAGGAACATTAATTCCACAGAATGTTGCATAAAATTTCACAACTGACAAGTTTCTTCCTTTCTCATGTGTAGCTGTTGTTATTGATACGTTTTACTGAGTTGACTATGGTAAAGCCAGTATAAATACAAGAGTAACCACTGAATTTAGTGAAGCTTAAAAAAACTGCCACTGATAGCCTTTCACTTCTTGGCCCTATTATAGCTCCAGTACTACAAGCATCTAAACAATATATTAGTAATGCCTGGTTAGTAAAAATGTTCTCTCAAACATACATGACCATTATGATTTGCTGAAGAACTGGACTGTCATTACTTTACTCTGGTGGCAGAATGACAAAGGGAAAGCATGGATTACTATCCTGTTTGCATCTTTATGTGCAAGACCATTCCTAAGTGCCTCACGTTACACTACAAGAGCAGCCACACAAAACCCCTCTTACCCCCATGCAATGTAGGGCTCTGCAATCCTGAGCATGTTGATGGAGGCCTTGTTCAGCTTCACAAACACCCCATTGAAGATCTGGCGCAGACGGAGGAGCTGCAGCACCTTGCGCACCTTGGGGCTGACGCCATTGATACCTGATCCTGATGACAAAAGCCAGTTTGGGTTCAGCGGGGACATAGTAGTTGCCAACTTTGCGGGCCATTCGGGACAAACGGATCTCACGCCTGTACATCTGCCTGTATTCCTTGTGGTACTGTTCAGCCCGCTTGTAGATGAGTTTCCGGGTCGTTTTCCGAGTCTTCTCAGTCAGCATCTTCTTGATGCGCTGGGCCTTCATAGCCGCAAAAGCCTTTCGCTTTTTCAAAAGGCTCTCGGGCACTGCTGGGACCTTCTTCCCTCTaagacaaaacattaaaagcattttaaaaatggtgcaTACAAGAAATGCAGCAAATTGAGCTcgtaaaaaaaatcatttaactAAGAAAATCCTACAACCTCTTTGAACAGGCAACATCTCTCCCCATGTTCACGCGAAGGACTGTTTTGCCAACTCAAACGAACTCGGCTTTACACACGTAACTATGTATTAGGTCTATATAAGAcatatttgcttcacaaccaaCAATATGATAGTCGGGTAGATTGTCAAATGTCACAAGTGCAATGTGCAAATGTCACAATACAGACACAGCATTTCGGCATCTGTACGGAGATGTGCTTAAGACGCTCTACCTAAGCAGGCC
>TU42785
taaaactatacaaaatataaaattttcCTCCTAAATCCTGCACCATGATGCATGAAATGTGCCTTTTAAACCAAATATTAACgctaaattacacatttcaaatatattcttaattaaatttaagactattcaaatatgacattttaatttaagtttataATTGTATAGCACATGCATATACTGCACtctatgtttgtttgtaatggACAATGCTATGACAAGTGCTATATACACAAGTGCACTTTTATGAAGCACTCAGTTGATTCTAAATCTGTACTACCTTTCACAGACGCTACTGCAATGCAGATGCAAGTGCTATAATTTGGTTCTACATTTAAGCTAAATTAAcgacatttaaatgcacatagaaatgtgaatttcacaaCTTTAGATCTAATGAGAACCTTTATTTgcatttagaaaatacaataagcaattTTAGGGAGCTGTACAAAGACTTATGAAAATATAGTCTAATTGCATATCTCCTGCCACATAACATGAGGTGATAGACTAATGTTGGGCATGAAATTGACTTTGCTCACTTGTGCCACACTAGCTTTCTAACCATTTATGCCAATGAGGAAAAACCTAAGCGttcaacagtttaaaaaaaaaaaaaaaaaaaagtttaacaaaaGCAAACCCCTACAACTCAATTTTGACAACCACATCTTGTACAGCTTATGGCAGAACAGCCTTCCCACAAATCCATGTACACACCAACATTAACACACTGTACGATTAGGTTTTAGCCCTGTATGTCCTGTAGTCTAGCGCGTGCCTCACCGTGTGCGCTCAGTTCATCCTCCTGATCATTCTGTTGATCTGGTCCTCCCGGTTACCAGCATCACCTCCCTCCACAAAGTGCGTGGTCTTCTTGTTCATCCCACCTCTGGGAGAGGACAGTTTGAAGGGCCACAGGAAGTTGTTTGCTCCCTTGAAGTTCTTTCCAACTGTGTAGATTTCATGGATCAAGTCCTCCACACAGATGATGCCATATTTGCCAGGCTTTTCTGAATCATGTCATTATCAGTGAGAGCAATGCGCTGCTTCCTGATCTTTCCATAGCCACGCTTGTAGATCAGCTCACGCACAGACTTCAGATTGGGTACCCCCATGCAATGTAGGGCTCTGCAATCCTGAGCATGTTGATGGAGGCCTTGTTCAGCTTCACAAACACCCCATTGAAGATCTGGCGCAGACGGAGGAGCTGCAGCACCTTGCGCACCTTGGGGCTGACGCCATTGATACTGCAGGTGAAGGGAAACAAGTTTGTCAACTCCATCCCAAATCAACACAACAGAATGAGTTTCGAGTGTCCAAATGTGGTTTCAGTCATTACTGGCTTAAATCTCAGCAATTTTTCACCACGGTCGATatgatggggaaaaaagttaTAACATCATTAACCACAGTTGGGGGGGGGCACAGTAAACAGCAAAGTGATGAACATCCGAATCATCTGTGCATTTTACAGCATTCAAAAGATCAACCCTCCTGCACTCATCCATTTCATACTGGTCCACTTACCCTCTGATCCTGATGACAAAAGCCAGTTTGGGTTCAGCGGGGACATAGTAGTTGCCAACTTTGCGGGCCATTCGGGACAAACGGATCTCACGCCTGTACATCTGCCTGTATTCCTTGTGGTACTGTTCAGCCCGCTTGTAGATGAGTTTCCGGGTCGTTTTCTCAGTCAGCATCTTCTTGATGCGCTGGGCCTTCATAGCCGCAAAAGCCTTTCGCTTTTTCAAAAGGCTCTCGGGCACTGCTGGGACCTTCTTCCCTCTaagacaaaacattaaaagcattttaaaaatggtgcaTACAAGAAATGCAGCAAATTGAGCTcgtaaaaaaaatcatttaactAAGAAAATCCTACAACCTCTTTGAACAGGCAACATCTCTCCCCATGTTCACGCGAAGGACTGTTTTGCCAACTCAAACGAACTCGGCTTTACACACGTAACTATGTATTAGGTCTATATAAGAcatatttgcttcacaaccaaCAATATGATAGTCGGGTAGATTGTCAAATGTCACAAGTGCAATGTGCAAATGTCACAATACAGACACAGCATTTCGGCATCTGTACGGAGATGTGCTTAAGACGCTCTACCTAAGCAGGCC
>TU42789
taaaactatacaaaatataaaattttcCTCCTAAATCCTGCACCATGATGCATGAAATGTGCCTTTTAAACCAAATATTAACgctaaattacacatttcaaatatattcttaattaaatttaagactattcaaatatgacattttaatttaagtttataATTGTATAGCACATGCATATACTGCACtctatgtttgtttgtaatggACAATGCTATGACAAGTGCTATATACACAAGTGCACTTTTATGAAGCACTCAGTTGATTCTAAATCTGTACTACCTTTCACAGACGCTACTGCAATGCAGATGCAAGTGCTATAATTTGGTTCTACATTTAAGCTAAATTAAcgacatttaaatgcacatagaaatgtgaatttcacaaCTTTAGATCTAATGAGAACCTTTATTTgcatttagaaaatacaataagcaattTTAGGGAGCTGTACAAAGACTTATGAAAATATAGTCTAATTGCATATCTCCTGCCACATAACATGAGGTGATAGACTAATGTTGGGCATGAAATTGACTTTGCTCACTTGTGCCACACTAGCTTTCTAACCATTTATGCCAATGAGGAAAAACCTAAGCGttcaacagtttaaaaaaaaaaaaaaaaaaaagtttaacaaaaGCAAACCCCTACAACTCAATTTTGACAACCACATCTTGTACAGCTTATGGCAGAACAGCCTTCCCACAAATCCATGTACACACCAACATTAACACACTGTACGATTAGGTTTTAGCCCTGTATGTCCTGTAGTCTAGCGCGTGCCTCACCGTGTGCGCTCAGTTCATCCTCCTGATCATTCTGTTGATCTGGTCCTCCCGGTTACCAGCATCACCTCCCTCCACAAAGTGCGTGGTCTTCTTGTTCATCCCACCTCTGGGAGAGGACAGTTTGAAGGGCCACAGGAAGTTGTTTGCTCCCTTGAAGTTCTTTCCAACTGTGTAGATTTCATGGATCAAGTCCTCCACACAGATGATGCCATATTTGCCAGGCTTTTCTGAATCATGTCATTATCAGTGAGAGCAATGCGCTGCTTCCTGATCTTTCCATAGCCACGCTTGTAGATCAGCTCACGCACAGACTTCAGATTGGGGTACCCCATGCAATGTAGGGCTCTGCAATCCTGAGCATGTTGATGGAGGCCTTGTTCAGCTTCACAAACACCCCATTGAAGATCTGGCGCAGACGGAGGAGCTGCAGCACCTTGCGCACCTTGGGGCTGACGCCATTGACCCTCTGATCCTGATGACAAAAGCCAGTTTGGGTTCAGCGGGGACATAGTAGTTGCCAACTTTGCGGGCCATTCGGGACAAACGGATCTCACGCCTGTACATCTGCCTGTATTCCTTGTGGTACTGTTCAGCCCGCTTGTAGATGAGTTTCCGGGTCGTTTTCCGAGCTTCTTCTCAGTCAGCATCTTCTTGATGCGCTGGGCCTTCATAGCCGCAAAAGCCTTTCGCTTTTTCAAAAGGCTCTCGGGCACTGCTGGGACCTTCTTCCCTCTaagacaaaacattaaaagcattttaaaaatggtgcaTACAAGAAATGCAGCAAATTGAGCTcgtaaaaaaaatcatttaactAAGAAAATCCTACAACCTCTTTGAACAGGCAACATCTCTCCCCATGTTCACGCGAAGGACTGTTTTGCCAACTCAAACGAACTCGGCTTTACACACGTAACTATGTATTAGGTCTATATAAGAcatatttgcttcacaaccaaCAATATGATAGTCGGGTAGATTGTCAAATGTCACAAGTGCAATGTGCAAATGTCACAATACAGACACAGCATTTCGGCATCTGTACGGAGATGTGCTTAAGACGCTCTACCTAAGCAGGCC

Function

symbol description
rpl7 Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Acts upstream of or within regulation of cell cycle. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Orthologous to human RPL7 (ribosomal protein L7).

NR:

description
PREDICTED: 60S ribosomal protein L7

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU42780 False 1858 TUCP 0.41 5 20607474 20610889
TU42783 True 2584 TUCP 0.40 4 20607474 20610889
TU42785 False 2139 TUCP 0.41 4 20607474 20610889
TU42789 False 1869 lncRNA 0.41 5 20607474 20610889

Neighbor

gene id symbol gene type direction distance location
AMCG00019440 NA coding upstream 42194 20555707 ~ 20565280 (+)
AMCG00019444 NA coding upstream 61716 20543587 ~ 20545758 (+)
AMCG00019445 kcnb2,LOC108426548,LOC107657825,LOC107560266 coding upstream 143588 20463323 ~ 20463886 (+)
AMCG00019433 NA coding upstream 484940 20115324 ~ 20122534 (+)
AMCG00019425 NA coding upstream 729611 19847157 ~ 19877863 (+)
AMCG00019441 rdh10,rdh10a coding downstream 1457 20612346 ~ 20626037 (+)
AMCG00019450 NA coding downstream 166367 20777256 ~ 20778916 (+)
AMCG00019453 gdap1 coding downstream 263541 20874430 ~ 20878814 (+)
AMCG00019455 LOC107092069 coding downstream 341530 20952419 ~ 20955046 (+)
AMCG00019454 NA coding downstream 367044 20977933 ~ 20989120 (+)
G34093 NA non-coding upstream 511024 20095318 ~ 20096450 (+)
G34086 NA non-coding upstream 529020 20075178 ~ 20078454 (+)
G34084 NA non-coding upstream 535910 20071336 ~ 20071564 (+)
G33913 NA non-coding upstream 1397764 19207194 ~ 19209710 (+)
G33874 NA non-coding upstream 1680187 18927047 ~ 18927287 (+)
G34183 NA non-coding downstream 22188 20633077 ~ 20635272 (+)
G34192 NA non-coding downstream 62098 20672987 ~ 20746971 (+)
G34204 NA non-coding downstream 160637 20771526 ~ 20776616 (+)
G34235 NA non-coding downstream 479255 21090144 ~ 21090416 (+)
G34278 NA non-coding downstream 850793 21461682 ~ 21461891 (+)
AMCG00019428 LOC107595150 other upstream 1152337 19451247 ~ 19455137 (+)
AMCG00019415 NA other upstream 1313266 19285536 ~ 19294208 (+)
AMCG00019402 NA other upstream 1586062 19005024 ~ 19021412 (+)
AMCG00019376 NA other upstream 3154815 17449320 ~ 17452659 (+)
G33406 NA other upstream 4525531 16043942 ~ 16081943 (+)
AMCG00019475 march6,LOC105024238,LOC102207159,LOC101475102,LOC102312386,LOC104929871,LOC100690953,LOC102783154,LOC107746911,LOC107686038,LOC107732575 other downstream 2004734 22615623 ~ 22643226 (+)
AMCG00019481 NA other downstream 2574927 23185816 ~ 23204250 (+)
AMCG00019480 NA other downstream 2622381 23233270 ~ 23248099 (+)
G34511 zfhx4,LOC107590192,LOC107721891 other downstream 3061236 23672125 ~ 23695801 (+)
AMCG00019492 NA other downstream 3434800 24045689 ~ 24086481 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G1251965 rpl7 misc NC_048579.1 CM023233.2 4782640 ~ 4788427 (-)