G33259 (garem1,LOC107659447,LOC107598699,LOC107684519,LOC107724394)


Basic Information

Item Value
gene id G33259
gene name garem1,LOC107659447,LOC107598699,LOC107684519,LOC107724394
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 14951842 ~ 14991996 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU41680
GCGTTTCCTGTCAACAGGCACGGCAAGGGCAGGAGCACAACTCCCGAAAGTCCTGGAAACCAGAAAgaaggagagcaagagagacgGGTCTCTGCCAGGACCATGGCTGACTCTCGCTGAGCGGTTGCAAGGGGTTTAATGCCAGCGAGCAAACATGGACGTGGGATTAATGCTCTATAACAACCTGAAAGATGTGACATGGAGCACGACGTCTCTGCCCTTAGACCGACTGGTCAGCGCATACCGTCTGCCGCAGATCGTCAAGCTGGACAGTGGTGAATCCGTCGAATGTCTGCGAGAGAATGACTACCTTTTGATTCACTCTTGTCGACAATGGACTACCATCACTGCCCACAGTCTGGAAGAAGGCCATTATGTAATTGGGCCCAAAATAGAGATCCCAGTCCATTATGGAGGTCAGTTCAAACTGCTGGAACAGGACCGAGACATAAAAGAACCCGTGCAATACTTCAACAGTGTGGAGGAGGTGGCCAAGGCATTTCCTGAACGGGTTTATGTCATGGAGGAAATAACATTCAATGTTAAGGTCAGCATGAAGAGCAAATATTTATCAGCACCTATGAGATTAATCACTGGAAAGAAATTTAACATGAAGGG

Function

symbol description
garem1 Enables proline-rich region binding activity. Involved in several processes, including cellular response to epidermal growth factor stimulus; epidermal growth factor receptor signaling pathway; and positive regulation of ERK1 and ERK2 cascade.

NR:

description
PREDICTED: GRB2-associated and regulator of MAPK protein 1-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU41680 True 618 TUCP 0.49 3 14951842 14991996

Neighbor

gene id symbol gene type direction distance location
AMCG00019329 LOC107559729,LOC107553429,LOC104958571 coding downstream 14613 14926701 ~ 14937229 (-)
AMCG00019328 NA coding downstream 56626 14837230 ~ 14895216 (-)
AMCG00019330 NA coding downstream 169292 14776808 ~ 14782550 (-)
AMCG00019326 b4galt6,LOC104925469,LOC106560385 coding downstream 220195 14720859 ~ 14731647 (-)
AMCG00019327 NA coding downstream 313610 14616919 ~ 14638232 (-)
AMCG00019332 NA coding upstream 1812 14993808 ~ 15000069 (-)
AMCG00019333 klhl14 coding upstream 11456 15003452 ~ 15018066 (-)
AMCG00019334 klhl14,LOC106599787 coding upstream 38357 15030353 ~ 15031231 (-)
AMCG00019335 NA coding upstream 146306 15138302 ~ 15153516 (-)
AMCG00019339 NA coding upstream 313927 15305923 ~ 15314117 (-)
G33206 NA non-coding downstream 233609 14714791 ~ 14718233 (-)
G33204 NA non-coding downstream 253430 14692705 ~ 14698412 (-)
G33132 NA non-coding downstream 869924 14081715 ~ 14081918 (-)
G33092 NA non-coding downstream 1318340 13633286 ~ 13633502 (-)
G33076 LOC104962440 non-coding downstream 1640042 13311503 ~ 13311800 (-)
G33268 NA non-coding upstream 69778 15061774 ~ 15062351 (-)
G33282 NA non-coding upstream 169716 15161712 ~ 15161967 (-)
G33285 NA non-coding upstream 190784 15182780 ~ 15184537 (-)
G33291 NA non-coding upstream 262036 15254032 ~ 15256023 (-)
G33393 NA non-coding upstream 866181 15858177 ~ 15931208 (-)
G33163 NA other downstream 393552 14491891 ~ 14558290 (-)
G33106 psma8,LOC100304914,LOC102789190,LOC103029839,LOC107572146,LOC101062730 other downstream 1286612 13662116 ~ 13665230 (-)
AMCG00019312 NA other downstream 1763550 13168436 ~ 13188292 (-)
AMCG00019284 NA other downstream 2528522 12413154 ~ 12423320 (-)
AMCG00019272 ppp4r1,LOC106579644,LOC106590337 other downstream 3066271 11852108 ~ 11885571 (-)
G33381 ube2v2,LOC107732116 other upstream 700486 15692482 ~ 15721452 (-)
AMCG00019396 NA other upstream 3392871 18384867 ~ 18441981 (-)
AMCG00019417 NA other upstream 4302816 19294812 ~ 19301547 (-)
AMCG00019419 cpa6,LOC106579545 other upstream 4450399 19442395 ~ 19454969 (-)
AMCG00019446 ube2w other upstream 5751534 20743530 ~ 20765496 (-)

Expression


Co-expression Network