AMCG00019881 (LOC106563268)


Basic Information

Item Value
gene id AMCG00019881
gene name LOC106563268
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 582350 ~ 593396 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019881
ATGAACCTGTGGGATTCGCTGACCGCAGTTCAGGGATGGGTTTCACCTGAGCTTGGCTCGGCTCAGTGCGTGGCACCGGCCGCTACAGCGAGAGACCAGCGACTTGTTCACTTTGGGCCCCTCCAGAGAAAAGATAATCTACCGAAGCTTGGGTCAGTACCACCAGTGACGCCGCCTTGTGTCGTGTGTTCCAGAGACAACAACTTCATTAAGGATTTCCCGCAGCTGGCGGACGGGCTGATGGTGATCCCGCTGCCTGTGGAGGAGCAGTGCCGGGGCATCCTGTCTGAGCCGCTGCCCAACCTGCCGCTGCTCACAGGTGGGCAGGAAccggggacggggacgggggTGAGGGGACAGCCCAAAGGGGGGGAGACTGCGGCTCCTCACCACACCATTCGAAACCACCTTCTTTCATTTCCCCTTTCTTTTACTCTCTTTCCTTCATTCTTGAATTGTGTTCACGCTGGGCTGTTCTGTGTTGATGTTGCAGGAGCTGCGAAGTTCAATGAGGCGATGGGGTACCCCATGGTCCAGCAGTGGAGGGTGCGCAGCAATCTGTACAAGGTGAAGCTCAGTGCCATCACATTGTCTGCAGGCTTCTCTAAAGTGTTGAAGGTGCTGAACGCCGAGAGCACCAGAGAGGAGCTGCTGTCTTTCATCCAGCAGTACGGCAGCCACTACATCTCTGAGGCGCTATATGGCTCCGAGCTCACCTGCAACATCTACTTCCCCAGCAAGAAGgttcagcagcagctgtggcTCCAGTACCAGAAAGGTAAGGCCACGGGGGGGGGCTCCAACACAGCGTAG

Function

NR:

description
PREDICTED: astrotactin-2-like isoform X5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019881 True 813 mRNA 0.57 4 582350 593396

Neighbor

gene id symbol gene type direction distance location
AMCG00019878 NA coding downstream 100829 455460 ~ 481521 (-)
AMCG00019875 NA coding downstream 342217 235518 ~ 240133 (-)
AMCG00019882 NA coding upstream 275665 869061 ~ 870896 (-)
AMCG00019883 NA coding upstream 351502 944898 ~ 945889 (-)
AMCG00019887 brinp1 coding upstream 1281164 1874560 ~ 1889869 (-)
AMCG00019888 brinp1,LOC107597955,LOC106563266 coding upstream 1320045 1913441 ~ 1920755 (-)
AMCG00019889 NA coding upstream 1512434 2105830 ~ 2135939 (-)
G59324 NA non-coding downstream 135482 445596 ~ 446868 (-)
G59322 NA non-coding downstream 199495 382652 ~ 382855 (-)
G59283 NA non-coding downstream 414327 167758 ~ 168023 (-)
G59280 NA non-coding downstream 483256 96833 ~ 99094 (-)
G59362 NA non-coding upstream 338913 932309 ~ 958515 (-)
G59388 NA non-coding upstream 671098 1264494 ~ 1264734 (-)
G59390 NA non-coding upstream 691029 1284425 ~ 1284745 (-)
G59395 NA non-coding upstream 753850 1347246 ~ 1347479 (-)
G59396 NA non-coding upstream 795949 1389345 ~ 1397225 (-)
AMCG00019880 NA other downstream 9523 535831 ~ 572827 (-)
G59408 LOC107374630,LOC108230875,LOC104924185,LOC105913012,LOC101063574 other upstream 991523 1584919 ~ 1586000 (-)
G59505 NA other upstream 1730892 2324288 ~ 2327415 (-)
G59530 NA other upstream 1861515 2454911 ~ 2480799 (-)
G59545 NA other upstream 1901503 2494899 ~ 2507020 (-)
G59712 NA other upstream 2438460 3031856 ~ 3034335 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000059_09692877_09697174 ASTN2 coding CI01000059 null 9692877 ~ 9697213 (+)