AMCG00020008 (dnm1a,dnm1,LOC108423695)


Basic Information

Item Value
gene id AMCG00020008
gene name dnm1a,dnm1,LOC108423695
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 6224949 ~ 6267200 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020008
CGTTCTCCCTGCTGCCACCTCCAGAAAGCGACCAGGTCACAGGTCCTGCTTCCTGCTCATGACCTGGAAGTGCACGAGAGAGCAAATGGACTTCCTCCCCCGTGGATCTGGCATCGTCACCAGGCGTCCCCTTGTGCTGCAGCTCATCAACTCTCCCACAGagTATGCCGAGTTCCTGCACTGCAAAGGCAAGAAATTCGTTGACTTCGATGAGGTGCGACAGGAGATCGATGCCGAAACGGACAGAGTCACCGGGATAAATAAGGGCATCTCTCCTGTACCCATCAACTTGCGGGTCTACTCTCCAAATGTTTTGAACCTCACCCTGGTGGATTTGCCCGGGATGACCAAGGTGCCAGTTGGAGACCAGCCTGCCGACATCGAGCACCAGATTCGAGACATGATCATGCAGTTTGTCACCAAGGAGAACTGCCTTCTCCTGGCTGTGTCACCTGCCAACTCTGACCTCGCCAACTCGGACGCCCTCAAGATTGCCAAAGAAGTTGATCTGCAAGGTCAGCGCACCATTGGTGTCATCACTAAACTGGACCTGATGGACGAAGGGACAGACGCCCGCGATATCCTGGAGAACAAGCTGCTGCCACTTCGCAGAGGATACATTGGGGTAGTGAACCGCAGTCAGAAGGACATTGATGGCAAGAAGGACATCCAGGCAGCGCTGGCAGCGGAGAGGaaattctttctctctcaccccAGTTACAGGCACATAGCAGACCGTATGGGCACACCCTACCTGCAGAAAGTGCTCAATCAGCAACTGACCAACCACATTCGAGACACCCTGCCAGGcctacgcaacaaactgcagaGTCAGCTGCTGTCCATCGAGAAGGAGGTGGAAGAGTACAAGAACTTCCGCCCAGACGACCCCTCTCGCAAAACCAAGGCCCTGCTACAGATGGTCCAGCAGTTCGCTGTGGATTTTGAGAAGCGCATCGAGGGATCTGGGGACCAGATCGACACATACGAGTTGTCAGGAGGGGCCAGGATCAACCGTATCTTCCATGAACGCTTTCCTTTTGAGCTGGTCAAGATGGAGTTTgatgagaaagagctgcgcagAGAGATCAGCTACGCCATCAAGAACATCCATGGTATCAGGCATACCATTGTGAAAAGGCAGATCTCGAAGATTAAAGAGCCGTGCCAGAAATGTGTGGACATGGTCATTTCTGAGCTAGTCAATACCGTTAGGCAGTGTACCAAGAAGGTAAAGCCCTCTGTGAAagcccccccctccaccacctccACCCTCATGGGCTGGGGTAGGACGGGACTCTTTACCCCAGACTTGGCCTTTGAAGCCATAGTGAAAAAGCAGATCCAAAAGCTCAAGGAACCCAGCTTGAAGTGTATAGATATGGTAGTGAGCGAGCTCACCTCTACCATCCGACAGTGTAGCGAAAAGCTGGCCCAGTACCCGCTCCTACGAGAGGAGATGGAGCGCATTGTCACCACACACATCCGGGACCGCGAGAGCAGGACCAAGGATCAGGTGATGTTGCTGATAGACATTGAACTGGCCTACATGAACACCAACCACGAGGATTTCATTGGATTTGCCAACGCTCAGCAGAGGAGTAACCAAATGAGCAAGAAGAAGGCCTCTGGGAATCAGGTGATCAGAAAGGGCTGGCTCACCATCAACAACATTAGCATCATGAAAGGAGGGGCCAAGGAGTACTGGTTTGTGCTGACGGCCGAGACCCTGTCCTGGTACAAGGATGAC

Function

symbol description
dnm1a Predicted to enable GTPase activity and microtubule binding activity. Predicted to be involved in receptor internalization and synaptic vesicle endocytosis. Predicted to act upstream of or within endocytosis. Predicted to be located in cytoskeleton. Predicted to be active in several cellular components, including microtubule; plasma membrane; and synapse. Is expressed in muscle and somite. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 31. Orthologous to human DNM1 (dynamin 1).
dnm1 Enables identical protein binding activity. Involved in endosome organization and receptor-mediated endocytosis. Located in nucleoplasm. Implicated in developmental and epileptic encephalopathy 31. Biomarker of Alzheimer's disease.

NR:

description
dynamin 1a isoform X5

GO:

id name namespace
GO:0005874 microtubule cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K01528 DNM1_3; dynamin 1/3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020008 True 1750 mRNA 0.53 15 6224949 6267200

Neighbor

gene id symbol gene type direction distance location
AMCG00020009 NA coding upstream 12485 6202008 ~ 6212464 (+)
AMCG00020004 NA coding upstream 97543 6126999 ~ 6127406 (+)
AMCG00019999 NA coding upstream 192909 6023287 ~ 6032040 (+)
AMCG00019998 LOC106533851 coding upstream 251477 5961221 ~ 5973472 (+)
AMCG00019991 NA coding upstream 878051 5342576 ~ 5346898 (+)
AMCG00020010 NA coding downstream 13323 6280523 ~ 6291842 (+)
AMCG00020007 hspa5 coding downstream 71330 6338530 ~ 6341784 (+)
AMCG00020006 ppp6c,Ppp6c,LOC102783418,LOC102313764,LOC106570422,LOC107587376,LOC100701794,LOC102784428 coding downstream 81387 6348587 ~ 6358927 (+)
AMCG00020014 LOC106570398 coding downstream 121206 6388406 ~ 6412281 (+)
AMCG00020015 NA coding downstream 148565 6415765 ~ 6443392 (+)
G60276 NA non-coding upstream 45314 6178545 ~ 6179635 (+)
G60272 NA non-coding upstream 52469 6165113 ~ 6172480 (+)
G60273 NA non-coding upstream 64378 6156793 ~ 6160571 (+)
G60270 NA non-coding upstream 69750 6154947 ~ 6155199 (+)
G60257 NA non-coding upstream 125048 6099476 ~ 6099901 (+)
G60324 NA non-coding downstream 92644 6359844 ~ 6382808 (+)
G60354 NA non-coding downstream 215634 6482834 ~ 6483995 (+)
G60363 olfml2a non-coding downstream 303180 6570380 ~ 6572561 (+)
G60431 NA non-coding downstream 685253 6952453 ~ 6955093 (+)
G60566 NA non-coding downstream 1521673 7788873 ~ 7792223 (+)
AMCG00020000 NA other upstream 37060 6182699 ~ 6187889 (+)
AMCG00020001 NA other upstream 110753 6106994 ~ 6114196 (+)
G60137 NA other upstream 863086 5355772 ~ 5361863 (+)
G60132 NA other upstream 865584 5358464 ~ 5359365 (+)
AMCG00019967 prrc2b other upstream 1368020 4823813 ~ 4856929 (+)
AMCG00020052 NA other downstream 1599400 7866600 ~ 7884548 (+)
AMCG00020053 NA other downstream 1777075 8044275 ~ 8051147 (+)
AMCG00020105 rpl28,rl28 other downstream 3516917 9784117 ~ 9788052 (+)
AMCG00020122 urm1 other downstream 4213334 10480534 ~ 10499506 (+)
AMCG00020129 tmem8c,LOC107720238,LOC107587553,LOC107699700,LOC107567143 other downstream 4471302 10738502 ~ 10755375 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_029783 NA non-coding NC_007116.7 CM002889.2 1221486 ~ 1423470 (+)
grasscarp (Ctenopharyngodon idella) CI01000033_00425156_00470606 DNM2A, DNM2 coding CI01000033 null 425156 ~ 470676 (+)