AMCG00020425 (ccdc102a,LOC106562045,LOC107594240,LOC107081377,LOC103376291)


Basic Information

Item Value
gene id AMCG00020425
gene name ccdc102a,LOC106562045,LOC107594240,LOC107081377,LOC103376291
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 18510463 ~ 18522856 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020425
ATGAACCACACCCCCAGCCCCCAGATGACTGAAGCTGCCAAATCAGGAGGCAGCCTTCTCTCGGGCTTGGGCTCCTCCCCGGACAGAATGCGCTCCCCAGACAGCATGACCACACCCAGCCCCAAGGGGGGCACGCCCAACTCCAGCCCACCCCTGCTGCTGTCCCCCGTGGGCTGCGTTGGTGAGGGGGGGGACTGGGAGAGCCGGGAGGAGCTGCGCCTGCGGGAGCTGGAGGAAGCCAGGGCCCGTGCCGCCCAGATGGAGAAGACGATGCGCTGGTGGTCAGACTGCACCGCCAACTGGAGGGAGAAGTGGAGCAAAGTGCGGGCCGAGCGCAACAAGGCACGGGACGAGGTGCGTCAGCTGCGGCAGCGTCTGGACGCCCTGACCAAGGAGCTGACGGGTGTGCGTCGCGAGCGACAGGAGCTCTCCAATGAGAATGAACAACTGCGTCAGGAGGCCAGCCGGCTGCGTGCCGACAGAGCTACCCCCGCCTCGCCTGCGCCGCCGCCCTCCCCCTCACCCTCCCCCTCACCCTCCCCCTCGGCACAGCCCCTTGATAACAAGCTGGCCTccgaaagggagagggagaccgaGGGGCCTGGCTCTCCAGAGCAGGAGCCTGTGCGAGACGTGGGCACGGAGAAACCTGAGAAGAACAAGGAGATGGAGCTGCTGGAGTCTCTGCTGCGGGCGAAGGCCGAAGGGCCGGACAGCTGGGACGGGCGCAGCGCTAGTAGCCTCCGCTCCGCACTCAGCCGTCAGGACCGCAACCGCCTGCTCTGGGACGACATCACCATCCTGGAAGAGGACACCAGCAAAGTCAATGCCCTCCAGCTGCGCCTCGATGAGTCCCAGAAGGTCCTGCTCAAGGAGAGAGAGGATAAGCTGTGCCTCAGTAAGAATATCGAGAAGCTGGAGACGGAGCTGAGCCAGTGGAAGCTCAAATATGAAGAGCTCAACAAGACCAAGCAGGAGACCCTGAAACAGCTGAACTTGCTGAAGGAGATGCACCAGGATGAGCTGGGCCGCATGTCAGAAGACCTGGAGGATGAACTGGGCGCCCGTTCCAGCATGGACAAGAAACTGGCGGAGCTGCGTGGGGAGATGGAGCGTCTACAGGCGGAGAATGCGGCCGAGTGGGGGCGGCGGGAGCGGCTAGAGACGGAGAAGCTGACACTGGAGCGCGACAACAAGAAGCTGCGGGGGCAGATCGAGGACCTGGAGGAGCAGCTGGCTCGCAAGCGTAGGCAGGCTGCCAGCGCCCTGGACACAGACCTCAAGAGCATCCAGACTGAGCTGTTCGAGAGGAATAAGGGTCAGTACCTTGAAGGCTCTGCAGGACCAGTAGAGCTCAGAGCTTCAGACACCTTGTCCAACAATCAATAG

Function

symbol description
ccdc102a Predicted to enable cytoskeletal motor activity. Predicted to be part of myosin complex. Orthologous to human CCDC102A (coiled-coil domain containing 102A).

NR:

description
PREDICTED: coiled-coil domain-containing protein 102A

GO: NA

KEGG:

id description
K16759 CCDC102; coiled-coil domain-containing protein 102

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020425 True 1389 mRNA 0.63 6 18510463 18522856

Neighbor

gene id symbol gene type direction distance location
AMCG00020419 NA coding upstream 111732 18395857 ~ 18398731 (+)
AMCG00020420 NA coding upstream 120552 18382143 ~ 18389911 (+)
AMCG00020415 NA coding upstream 151618 18338437 ~ 18358845 (+)
AMCG00020413 LOC107596504,LOC108411466,LOC107753522 coding upstream 314833 18187199 ~ 18195630 (+)
AMCG00020412 LOC107707912 coding upstream 324415 18182076 ~ 18186048 (+)
AMCG00020426 ccdc102a,LOC106587147,LOC106562045,LOC107674431,LOC107754670 coding downstream 7322 18530178 ~ 18536093 (+)
AMCG00020427 LOC106562068,LOC107585958,LOC106903279,LOC106941941 coding downstream 86913 18609769 ~ 18617672 (+)
AMCG00020428 vac14 coding downstream 103112 18625968 ~ 18668640 (+)
AMCG00020430 NA coding downstream 149046 18671902 ~ 18680796 (+)
AMCG00020429 LOC106562044,LOC106587150 coding downstream 184950 18707806 ~ 18727969 (+)
G63097 NA non-coding upstream 69544 18438202 ~ 18440919 (+)
G63069 NA non-coding upstream 116157 18394101 ~ 18394306 (+)
G63068 NA non-coding upstream 117157 18393066 ~ 18393306 (+)
G63058 NA non-coding upstream 149970 18360275 ~ 18360493 (+)
G62994 NA non-coding upstream 299434 18210769 ~ 18211029 (+)
G63203 LOC101154678 non-coding downstream 760102 19282958 ~ 19283173 (+)
G63208 NA non-coding downstream 803739 19326595 ~ 19329495 (+)
G63209 NA non-coding downstream 839016 19361872 ~ 19363484 (+)
G63248 NA non-coding downstream 1107418 19630274 ~ 19630567 (+)
G63259 NA non-coding downstream 1130368 19653224 ~ 19654272 (+)
G63045 NA other upstream 176431 18332569 ~ 18334032 (+)
AMCG00020407 NA other upstream 438412 18067787 ~ 18072051 (+)
AMCG00020408 NA other upstream 444674 18058558 ~ 18065789 (+)
G62895 NA other upstream 581559 17928328 ~ 17928904 (+)
AMCG00020371 nutf2 other upstream 1038594 17459144 ~ 17471869 (+)
AMCG00020439 LOC107696663,LOC107556242,LOC107746488,LOC107726063 other downstream 1074347 19597203 ~ 19602324 (+)
AMCG00020438 NA other downstream 1108469 19631325 ~ 19636221 (+)
AMCG00020470 NA other downstream 3612512 22135368 ~ 22142198 (+)
AMCG00020487 NA other downstream 3833318 22356174 ~ 22409493 (+)
AMCG00020505 NA other downstream 4530942 23053798 ~ 23062149 (+)

Expression


Co-expression Network