AMCG00020427 (LOC106562068,LOC107585958,LOC106903279,LOC106941941)


Basic Information

Item Value
gene id AMCG00020427
gene name LOC106562068,LOC107585958,LOC106903279,LOC106941941
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 18609769 ~ 18617672 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020427
ATGACTATgcattGCTGTGACTATTTGTCAGACGGTCTGATAGATGCGTCTTTATTCCAGATCTATCGCCGCTGCTGGCTGGTGTTTAAGAAGTCCTCCAGTAAGGGCCCTCGGCGGCTGGAGAAGTACACAGATGAGAAGTCGGCTTACATCCGGGCGTGTCCTAAGGTGACGGAGATCAGCAACGTGAAGAATGTGACCCGGCTGCCCCGAGACACCAAGAGGCAGGCTGTGGCCATCGTCTTCACAGATGACACTTCACGGACGTTCACCTGCGAGTCAGAGTTGGAGGCGGAAGAGTGGTATAAGATCCTTTCCATTGAGTGTCTGGGAGCCAGGCTCAATGACATCAGCCTGGGGGAGCCAGATCTCCTGGCAGCGGGTGTACAGTGTGAGCACACAGAGAGATTTAACGTGTTCCTACTACCATGCCCCAACCTTGATATCTACGGAGAGTGCATGATGCAGATAACCCATGAGAACATCTACCTCTGGGACATACACAACCCTCGCACCAAACTGGTCACCTGGCCCCTCTGCTCCCTGCGCCGCTACGGCCGAGACGCCACCCGCTTCACCTTCGAGGCTGGCAGAAATCGAAACAGCTCTGTATATGAGATGCTGTCAAAGGGCTCGGAGCCGGGGTCCTATCCCTGCACGCCCACCGCCATACTGCCGCGCAGCGCCTTCTGGCACCACATCACGGGCACGCAGGGGGCCATCGACACTGGCAATGGTGATGTGTTTTCCAGCCCTCAGTTGGACTCCGACTCGGACCTGCTCCCGACTCGGCTGCCGTCAGAACGCCACAACTCTGCCCCGCTGGGCCGCCTCCCCGGCTCCTTCCCCTCATACCCTGGCCAGTGAGGGACACTGCAGAGTCCCAGGTTTCCCCCCCTCGTACCCCCTTCACCTGCGCTGAGACTGGACTTCATCTCCCCGACCTATCACCCCACCGCCCACCCTCCCCCCCGATGAAGTACAGCCAGGGGGGGACAGTCCTGCGGGAGGCTGGATGTGGAGAGGGGCAGGCTCACGCACACATTGAGGAACGGCCCTTCTCAGACGAGGAGACCCCAAAAGCAGCTTCAGCTCGGAAAGAAACAGAGGCCAGAGTTGGGGGAGTAGATGGAGAAAAGCAGACAAAAGGAGTGTAGTCTCTGAGGAAGGCTTGATGTCTCAACAGCCTTCATGCGAGATGAAGGAAGTTTGAAGACTCTATTGAGCATTTCTGGCTAAAGACACATTGAAGTTTGCTTTCTTtccccttttatttttcttttgttttcttaggAAGCAGTTTTTGTAACCTAGACACTTTGGTGAGAGTGCAACGCTCTGCATGATCCTCCAGCAGTCTGGAATTGAGTTGTTTTGAAGTGAGAAGAGAGCCTTCCTTTACTGAGGCTCCCAGAACCCCTTTGTTAGTTGGATGGAGAGCTGGAAGCTGCTTTTTGCCCCTCAGCTATCAGAGACAATGTGGCCTATCAGGCTACATACACTGGATCTGAAAGCTATTAAGAGGCACCTGCATAGACCTTTCTTGAATGGCTATGGAGTACTTtgtgtgcagtttatttttttggttatgAATTGAAACTGTGCGCTTTTATgagtgcaaacaaaaacagattaagAGATAAAACAGCACAGACAAGGCTAAGGCAATGTGGTGTAGTAGCACAAAACAGTACATCACCTTTTTGAACAATAACTTCAAATTTTCCCAAACAAGAGTCTACAAGGtcccatgttttatttttcctgaaaatgcacaaaacaacCTAGATTCCTGTTGcttgtctgtgttttcattgtgaACTAGGATTTCTTAAATGTTCGCGTTTCAGGAGAAGGATGGgtgttttaaatggattttcTTGTTGAAGATGGACGCAGGTCAAACAGATGTGGATGATGTACTTTTTGGGGGAGgggttttgtttctgtagctGAAGAAACACCCAGGAAAAGCAGACATTGCCTTTAAGCTTTGGAAGTCCTACAGGACATGAGAGCACGTTGCTGAAGCTCGGTTGTGGCCTGAATTTGAGTGTTGGGAACAATGAGAGAGAACACGGCATTTGGTTGTATAGCTACTGTCCACTGGTCATGTTGGTTTGTACTGGATCGTAGAAGTGACGTCTCTGGAAAACCGACCATACAAAATGTCTCTTATTTTtgctgtgtagctgatttttgcAGTCCAGCCCCTCAAAACCTGTGTAACAGAGACGGGATTTGACTCCAGCACCAGTCACCAATGCAAGACGCTCCAGCGGTTCAGCTCTCTGCAACAATATCAAGACGACTGCGCTTACATTACGATGGGGGACTTGTAAGACTGGTACTGATTTGAAAGACGCTTCagaaagaagaaattaaatgagcAGGGTGCGCTTTAACtctaaaatatttgttcttagTTTTGTTCCTCATTTTTACAAATTCGGTGGTCTTATTCACAACCGAACAAagaaattaatcttttttttttttttttttttgttaa

Function

NR:

description
PREDICTED: docking protein 4-like

GO: NA

KEGG:

id description
K24037 DOK4_5_6, IRS5_6; docking protein 4/5/6

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020427 True 2512 mRNA 0.49 8 18609769 18617672

Neighbor

gene id symbol gene type direction distance location
AMCG00020426 ccdc102a,LOC106587147,LOC106562045,LOC107674431,LOC107754670 coding upstream 73676 18530178 ~ 18536093 (+)
AMCG00020425 ccdc102a,LOC106562045,LOC107594240,LOC107081377,LOC103376291 coding upstream 86913 18510463 ~ 18522856 (+)
AMCG00020419 NA coding upstream 211038 18395857 ~ 18398731 (+)
AMCG00020420 NA coding upstream 219858 18382143 ~ 18389911 (+)
AMCG00020415 NA coding upstream 250924 18338437 ~ 18358845 (+)
AMCG00020428 vac14 coding downstream 8296 18625968 ~ 18668640 (+)
AMCG00020430 NA coding downstream 54230 18671902 ~ 18680796 (+)
AMCG00020429 LOC106562044,LOC106587150 coding downstream 90134 18707806 ~ 18727969 (+)
AMCG00020432 NA coding downstream 147846 18765518 ~ 18769425 (+)
AMCG00020431 NA coding downstream 165599 18783271 ~ 18863273 (+)
G63097 NA non-coding upstream 168850 18438202 ~ 18440919 (+)
G63069 NA non-coding upstream 215463 18394101 ~ 18394306 (+)
G63068 NA non-coding upstream 216463 18393066 ~ 18393306 (+)
G63058 NA non-coding upstream 249276 18360275 ~ 18360493 (+)
G62994 NA non-coding upstream 398740 18210769 ~ 18211029 (+)
G63203 LOC101154678 non-coding downstream 665286 19282958 ~ 19283173 (+)
G63208 NA non-coding downstream 708923 19326595 ~ 19329495 (+)
G63209 NA non-coding downstream 744200 19361872 ~ 19363484 (+)
G63248 NA non-coding downstream 1012602 19630274 ~ 19630567 (+)
G63259 NA non-coding downstream 1035552 19653224 ~ 19654272 (+)
G63045 NA other upstream 275737 18332569 ~ 18334032 (+)
AMCG00020407 NA other upstream 537718 18067787 ~ 18072051 (+)
AMCG00020408 NA other upstream 543980 18058558 ~ 18065789 (+)
G62895 NA other upstream 680865 17928328 ~ 17928904 (+)
AMCG00020371 nutf2 other upstream 1137900 17459144 ~ 17471869 (+)
AMCG00020439 LOC107696663,LOC107556242,LOC107746488,LOC107726063 other downstream 979531 19597203 ~ 19602324 (+)
AMCG00020438 NA other downstream 1013653 19631325 ~ 19636221 (+)
AMCG00020470 NA other downstream 3517696 22135368 ~ 22142198 (+)
AMCG00020487 NA other downstream 3738502 22356174 ~ 22409493 (+)
AMCG00020505 NA other downstream 4436126 23053798 ~ 23062149 (+)

Expression


Co-expression Network