AMCG00020738 (pdcd5,LOC106587385,LOC107550119)


Basic Information

Item Value
gene id AMCG00020738
gene name pdcd5,LOC106587385,LOC107550119
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 32061412 ~ 32071253 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020738
CAGCGCTCGATGATTCTGTGCTCGATTCAGCGTCCCTGTGCTGCAGCGGGGCCCTGCCTGATCCGGATTTCACGTTAGTGGCGAAAGTGTGATTTTCCCCGACATCCAACAATGGCAGACGAAGAGCTGGAAGGTATCAGGCGGCAGCGGATGGCCGAGCTGCAGTCTAAGCATGGGGAATCTGGCGGTGATCCACAGGCTCAACAGGAGGCCAAGCAGAGagaaaCTGATATGAGAAACACGATTCTTGCACAAGTCTTAGATCAGTCTGCGCGGGCCAGATTGAGTAATCTGGCGCTGGTGAAGCCGGAGAAAGCCAAAGCGGTGGAGAATTACCTCATCCAGATGGCTCGATTCGGACAGCTGGGGGGAAAGATTTCTGAAACCGGATTGATAGAGATCCTTGAGAAAGTCAGCCAGCAAACGGAAAAGAAGACCACAGTCAAGCAGTAA

Function

symbol description
pdcd5 Predicted to enable DNA binding activity. Predicted to be active in cytosol and nucleus. Orthologous to human PDCD5 (programmed cell death 5).

NR:

description
programmed cell death protein 5

GO:

id name namespace
GO:0003677 DNA binding molecular_function

KEGG:

id description
K06875 PDCD5, TFAR19; programmed cell death protein 5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020738 True 453 mRNA 0.53 6 32061412 32071253

Neighbor

gene id symbol gene type direction distance location
AMCG00020737 NA coding upstream 1594 32057395 ~ 32059818 (+)
AMCG00020736 NA coding upstream 9558 32031531 ~ 32051854 (+)
AMCG00020733 NA coding upstream 121673 31920409 ~ 31939739 (+)
AMCG00020732 pdpr,LOC106595780,LOC107105036 coding upstream 167289 31868000 ~ 31894123 (+)
AMCG00020734 NA coding upstream 204231 31836978 ~ 31857181 (+)
AMCG00020740 NA coding downstream 24158 32095411 ~ 32097314 (+)
AMCG00020741 NA coding downstream 39277 32110530 ~ 32119578 (+)
AMCG00020747 ap3m2,LOC108255511,LOC108439675,LOC103397469 coding downstream 151953 32223206 ~ 32232152 (+)
AMCG00020750 ikbkb coding downstream 182875 32254128 ~ 32263707 (+)
AMCG00020749 NA coding downstream 210328 32281581 ~ 32289339 (+)
G65332 NA non-coding upstream 276279 31784817 ~ 31785133 (+)
G65290 NA non-coding upstream 349647 31711545 ~ 31711765 (+)
G65276 NA non-coding upstream 378258 31682114 ~ 31683154 (+)
G65270 NA non-coding upstream 401957 31657726 ~ 31659455 (+)
G65266 NA non-coding upstream 425083 31635763 ~ 31636329 (+)
G65413 NA non-coding downstream 21718 32092971 ~ 32093171 (+)
G65437 vdac3,LOC107671013,LOC107559564,LOC107754399 non-coding downstream 111109 32182362 ~ 32268201 (+)
G65450 NA non-coding downstream 162897 32234150 ~ 32253861 (+)
G65452 LOC106568273,LOC106562702,LOC104948043,LOC105031130,LOC102213975 non-coding downstream 197373 32268626 ~ 32269457 (+)
G65503 NA non-coding downstream 236185 32307438 ~ 32307719 (+)
G65343 NA other upstream 196706 31863383 ~ 31864706 (+)
AMCG00020715 gas8 other upstream 576942 31459502 ~ 31484470 (+)
AMCG00020708 LOC106562285 other upstream 843572 31162601 ~ 31217840 (+)
G65100 NA other upstream 1290485 30767024 ~ 30770927 (+)
AMCG00020695 cdyl2,LOC106562298 other upstream 1361158 30686706 ~ 30700254 (+)
AMCG00020742 NA other downstream 22771 32094024 ~ 32095186 (+)
G65433 LOC106580491,LOC108439670,LOC103398109 other downstream 115361 32186614 ~ 32189381 (+)
AMCG00020748 NA other downstream 203033 32274286 ~ 32280835 (+)
G65590 NA other downstream 521229 32592482 ~ 32594454 (+)
AMCG00020783 dock5,LOC106585561 other downstream 636680 32707933 ~ 32744735 (+)

Expression


Co-expression Network