AMCG00020913 (LOC102294053)


Basic Information

Item Value
gene id AMCG00020913
gene name LOC102294053
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 36284882 ~ 36326829 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020913
ATGATCAATGTATCTCGGCAGCAGGTGGAGGACTTTCATGGGCCCGAGGACTTCTGGTGTCTGTGTGTCGCCTGGAGCCACCTGGGGACCTCAAAGAGTCGCAAGGCCACCGTGCGGATTGCATACCTGCGCAAGAACTTCGAGCAGGACCCCCAGGGCAAGGAGGTGCCACTTGAGGGCATGATCGTGCTACACTGTCGTCCCCCAGAGGGAGTGCCACTGGCAGAGGTGGAATGGCTGAAGAACGAGGAGCCGGTGAGCTCGCTAAATGACGATAACATTGATACCAGAGCTGACCACAATCTCATCATTAACCAGGCTAGGCTCTCGGACTCGGGGAACTATACTTGCCTGGCTAGCAACATCGTGGCCAAGAGACGGAGTTCAACAGCCACTGTGGTGGTCTATGTGAATGGCGGCTGGTCTCTGTGGACAGAGTGGTCAGCCTGCAACGTGCGCTGCGGCCGGGGGGTTCAGAAACGCTCCCGCACCTGCACCAACCCGGCGCCCTTGAACGGGGGGGCCTTCTGCGAGGGCATGTCAATGCAGAAGATCACCTGCAACACAGTTTGCCCAGGTGAGGCCCGGATGTCCGTCACCGCAGAGCAACAGATCCCAGTGGACGGGGGCTGGGACGCGTGGAGCGAGTGGTCGGTGTGCAGCGCGGAGTGTGAGCGCCAACGCAGGCGGGATTGCACGTCCCCCTCACCCCGACACGGCGGCAAAGTGTGTGAGGGGCCCGGGCAGGAGACAGAAAACTGCACGGAGGGACTGTGCACTCAGAGTATGGACGGCACCAGCGACGTGGCACTTTACTCTGGGTTGGCCGCGGGGGTCATCGCTGTGGCCGTCCTGGTGGTGGCGGTCACTCTGTACCGGAAAAGCCAGAGTGAGTACGGGGTGGATGTCATCGACTCCTCCGCGCTCACTGGGGGGTTCCAGTCCTTCAACTTCAAGACCGCCAGACAAGgCAATCCCCTGCTCTTGAACTCCTCCATGCAGCCGGACCTGACCGTCAGCCGGACATACAGTGGACCGATCTGCTTTCAGGACACCATGGACAAGGAGCTGATGACCGAGTCCTCCCTGTTTGACCCCTTGCCCGACATCAAGGTCAAAGTGCAGAGTTCATTCATGGTGTCACTCGAGGTGGCGGACCGGGCAGAGTATCACGTCAAGGCCCTTCCCGAGACCTTCCCCAGGGGCCTCAGCAGAAACTACAACACTGTGGATGGGCGCAAAAAGACCCTGCTCACCCCTAGCCTCTGTGCTGTGCCCTCTAAACCCGAACTCAGAACTGTGGGCATATTCGGGCATCTAGGTGGTCGGCTAGTGGTCCCCAATACAGGAGTGAGCCTGCTGGTACCCCATGGGGCGATCGCAGAGGACACTTCCTGGGAAATGTTCATGATCATCAATCAGGAGGAGGCGAGTTTGCAGTCAGATGAAGGCTGCGAGATCCTGCTAGGCCCTGAGGTGACCTACGGACCGCCTGGCCTCACACTGTCCTGCCCGGTGGCCATGACGATAGCCCACTGTGCCGAGGTAAACCCAGAGCACTGGAGCATCCGCCTCAAGAGACAAACTCAGGAGGACAAGTGGGAGGAAGTGATGTCGGTGGATGAAGAGACCACTTCCTGCTACTGCCTCATGGACTCGCACAGCTGCCATCTGTTGCTGGACCAGCCAGGGACCTACGCGCTGGTGGGAGAGCCCCTCACAGAGACGGCGGTCAAGAGGCTGAAGCTGGCCGCCTTCGGGAGCATGTCTGCCAACTCCATGGACTACAGCCTCCGGGTGTACTGCGTGGACGACACCCCGCATGCCTTTCAGGAGGTGGCTGCTGCCGAAAAGAGCAGAGGTGGACAGCTACTGGAGGAGCCCAAGACACTGCTCTTCAAAGGCAACACCTTCAGTCTCCAAGTCTCCATCCAAGATGTCCCTCAGTTTCTGTGGAACATCAAGCCATTCACCACGTGTCAGGAATTCCCTTTCTCTCAAGTGTGGTGCAGCAACCAGCAACCCCTGCACTGTGCCTTCTCCCTGGAGAGATATAGCCCAGCCACCACACAGCTCTCTTGCAAGATCAGTGTGCGGCAGGTCAAAGGTCACGAGCAGATCCTCCAGGTCTACACGTCAGTGGTAGAGAGCGAAAAGGAGACCGTCCCTTTCTTCACGCAAGCGGACTGTACTGTGACCTCTCAGACTGGCCCCAAGGCCTTCAAAATCCCCTTCTCCATCCGTCAGAGGATCTGTGCCACGTTCGACACCGCCAACACAAAGGGCAAAGACTGGCAGCTCTTAGCGCAGAAGCTTCACATCGAAAGGAACCTCTCCTACTTCGCCAAGCAAAACAGCCCCTCAGCCGTGATCCTGAATCTTTGGGAAGCCCGTCACCAAGACAATGGCGACCTGGACTCTTTGGCAAGCGCTCTGGAGGAGATTGGCAAAATCCACTCCAAGAGCCCGGTGAACACTGAGGAGGCGGTTCCCGAAAACACAGACTTCACCTACGCCAGCTAA

Function

NR:

description
PREDICTED: netrin receptor UNC5D-like isoform X2

GO: NA

KEGG:

id description
K07521 UNC5; netrin receptor unc-5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020913 True 2523 mRNA 0.59 14 36284882 36326829

Neighbor

gene id symbol gene type direction distance location
AMCG00020912 NA coding downstream 28372 36246583 ~ 36256510 (-)
AMCG00020903 NA coding downstream 106621 36175349 ~ 36178261 (-)
AMCG00020905 LOC107756834,LOC107691567,LOC107548280 coding downstream 141789 36128362 ~ 36143093 (-)
AMCG00020906 star coding downstream 167188 36114629 ~ 36117694 (-)
AMCG00020904 LOC103396926 coding downstream 183989 36090541 ~ 36100893 (-)
AMCG00020915 NA coding upstream 545505 36872334 ~ 36874433 (-)
AMCG00020917 NA coding upstream 550646 36877475 ~ 36894127 (-)
AMCG00020918 NA coding upstream 582330 36909159 ~ 36913434 (-)
AMCG00020916 NA coding upstream 587658 36914487 ~ 36931628 (-)
AMCG00020924 NA coding upstream 647580 36974409 ~ 36998756 (-)
G66499 NA non-coding downstream 47955 36235772 ~ 36236927 (-)
G66416 NA non-coding downstream 347624 35926538 ~ 35937258 (-)
G66327 NA non-coding downstream 513196 35771484 ~ 35771686 (-)
G66284 NA non-coding downstream 581809 35702763 ~ 35703073 (-)
G66259 NA non-coding downstream 782570 35436290 ~ 35502312 (-)
G66527 NA non-coding upstream 420686 36747515 ~ 36747743 (-)
G66535 NA non-coding upstream 524241 36851070 ~ 36851636 (-)
G66536 NA non-coding upstream 542588 36869417 ~ 36870155 (-)
G66613 NA non-coding upstream 687152 37013981 ~ 37019796 (-)
G66685 NA non-coding upstream 940953 37267782 ~ 37268223 (-)
AMCG00020911 NA other downstream 2353 36260993 ~ 36282529 (-)
AMCG00020900 NA other downstream 298170 35975764 ~ 35986712 (-)
AMCG00020887 tmem127 other downstream 465052 35813873 ~ 35819830 (-)
AMCG00020876 NA other downstream 587913 35694968 ~ 35696969 (-)
G66279 NA other downstream 592422 35650980 ~ 35692460 (-)
AMCG00020923 whsc1l1,LOC107720716,LOC107687514,LOC107705078 other upstream 693182 37020011 ~ 37045939 (-)
AMCG00020922 NA other upstream 734766 37061595 ~ 37067805 (-)
AMCG00020943 NA other upstream 1304948 37631777 ~ 37632576 (-)
AMCG00020970 NA other upstream 2720875 39047704 ~ 39104867 (-)
AMCG00020997 atad1a,LOC106580455,LOC105890049,LOC105014378,LOC107656802,LOC108414574 other upstream 4230301 40557130 ~ 40640339 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_030119 unc5db coding NC_007116.7 CM002889.2 27137473 ~ 27397612 (+)
grasscarp (Ctenopharyngodon idella) CI01000339_04040121_04109097 UNC5DB, UNC5D coding CI01000339 null 4040121 ~ 4109097 (+)