XLOC_030119 (unc5db)


Basic Information

Item Value
gene id XLOC_030119
gene name unc5db
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 27137473 ~ 27397612 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00058891
TTCCATAATACGCAACACAAAAAGCTCCATCAACATTCAATCATAAACCACTGCCAGGACGAATATTCCCACCTGACTGGTGCTGATGCTTATGGTGAGTTTGTCTCCGCCCACCGTGGCGCGCCATTGGCTGCTTCGGCCAGTATGCGAGCGGCACCTGCGAGTCTGAGTGCACTAGAACGAGGCTCTCTAGCGGGGCACAAGCAGGCGCGGTGCCTGAAGTTCAGCGCGCCGGAATGATGATGTCTGCAGATCTTCCAGAAACAAGTCAGACCATTAAAGTCAAAGAGACCGCTAGAGCAAGAAACAAGGAGCTGTCACAACATCATAAAGATGGACGAAATCAGCCCTTAAAATGACTGAGCGAAACAAAACAGAAATGGGAAGTACCAGGAAGAGAGCACGGCGCTTTTTGGAGATCATCACGGTTCTCGCGCTCTGTGCACCGCACGCCAGCGGTCGAGGACCCGTTGGTGATGCCCTTGCTGATTCCTTGTCATCAGTTGGTGGGACGTTACCTCACTTCCTGCAAGAGCCTGAGGATGCTTACATAATCAAAAACAACCCGATTAAGCTGCGCTGCCGTGCCACCCCAGCCCTGCAGATATTCTTCAAATGCAACGGGGAATGGGTACATCAAAACCAGCATTCCTCACAAGAGTACATGGATCAAAACACTGGGGTAAAAATCCGCGAAGTGACGATCAATGTTACCAGGCAGCAGGTGGAGGATTTTCATGGGCCGGAAGACTACTGGTGCCTGTGTGTGGCCTGGAGTCATCTAGGAACATCCAAGAGCCGCAGAGCCACCGTGAGGATAGCCTACCTCCGCAAGAACTTCGAGCAGGATCCTCAAGGGAAGGAAGTGCCAATCAAGGGCATGATTGTGCTGCATTGCCGTCCCCCAGAGGGAGTGCCCATGGCAAAGgTGGAGTGGTTGAAAAATGAAGAACTGGTCAGCGCACTTGAAGATGACAACATTGACACTCGTGCTGACCACAATCTGATCATCAATGAAGCCAGACTTTCCGACTCTGCCAACTACACCTGCCTCGCCACTAACATCGTCGCAAAAAGACGCAGTACTACAGCTACTGTAGTTGTGTTTGTGAACGGCGGTTGGTCTCTGTGGACTGAGTGGTCTTCCTGCAGTGTGAACTGTGGGAGAGGAGTTCAGAAACGCTCTCGGACCTGCACGAACCCTGCTCCTCTGAACGGAGGGGCTTTCTGCGAGGGCATGTCTGTCCAGAAGATCGCCTGCAAtgcagtctgtccagTGGATGGAGTTTGGGAGGAGTGGAGCGAGTGGACGATGTGTAGTGCGCAGTGTGAGAGACAGCGATGGAGGGAGTGCAACGATCCTCCACCCCGTCACAGAGGCAAGATGTGTGAGGGAGAAGGTCAAAGCACAGAGAACTGCACTGGAGGATTGTGCACGCAAAaTGGAAAGCTGATGCATGATGTTAAGCCACAGAGCATGGAGAACTCAATGGATGTAGCGCTGTACTCTGGTTTGGCTGCGGGTGTGATCGCTGTGGTTGTCCTCATCGTGGCCATTACCCTCTACAGGAAGAGCCAGAGCGAGTATGGAGTGGACGTCATTGACTCATCAGCTCTCGCTGGAGGATTCCAGTCCTTCAACTTCAAAACCACCAGACAGGGCAATCCACTTCTACTGAATTCCTCCATGCAGCCTGATATAACCGTCGGCCAGACCTACAGCAGCCCAATCTGCTTTCAGGACTCCATCGACAAAGAGCTCTTTGACCCCTTGCCCGACAAGGTCAAAGTTCAAAGCTCCTTTATGGTTTCACTAGGTGTGGCAGACCGGGCCGAGTACCATGTAAAAGCTCATCCACAAACCCTCCCTGCAAACCTTCACCCAAACTACAGCATGGTAGAAGGAAAGAAGACGGCCACAATGGCTCCCAATGGACTTCACACCCCCGGGAAGATTCAGCTGAAGACAAGCGCTGTGTTTGGACACCTGGGTGGCCGATTAGTCATTCCAAATGCAGGAGTGAGCTTGCTGGTTCCTCACGGGGCGATTGCTGATGACACCTCTTGGGAAATGTACATGCTCATAAATCAAGGAGAGACTAGtgcCCAATCAGAGGAGAGGTGTGAGATTCTACTGGGGCCAGAGATCACATATGGACCTCCGGGCCTAAGCCTGTCCTGTCCTGTTGCCATGACGATAGCTCATTGTGCTGAAGTCAGCGCCGAAAACTGGAACATTAAACTCAAGAGACAAACCAAGGACAACAAGTGGGAGGAAATAATGTCAGTAGATGATGAATCAACCTCCTGCTATTGCCTGATGGACTCACATAGCTGTCACTTGTTGCTGGATCAGCCGGGCTGTTATGCGCTGGTGGGGGAGCCAATCACCGATGCCGCCATAAAGAGACTAAGGATTGCTGTGTTTGGCAGTATGGAGGCTTCCTCTTTGGACTACAGCCTGCGAGTGCACTGTGTAGACGATACGCCACATGCCTTTCAGGGAGTGGTCACAGCTGAAACCTGCAGAGGAGGTCAGCTTTTAGAAGAGCCCAAGACACTGTTCTTCAAAGGAAACTGCCTCAGTCTGCAGGTGTCCATCCAGGATATCCCTCAGTTTCTGTGGAGCATCAAACCCTTCACCACCTGTCAGGAATTCTCCTTCACCCAAGTGTGGTATAGTAACCAGCAGCCTGTGCACTGTGCCTTCTCACTGCAGAGACATAGCGCCGCCACCAACCAGCTCTCCTGCAAGATCAGTGTGCGGCAGGTCAAAGGTCACGAGCAGATCCTGCAGGTCTACACCTCAGTGGGAGAGaATGAGAAAGAGACAGTCCCATTTTTTATGCAGGCAGATTGCACGGTGACTTCACAGACAGGGGCCAAAGCCTTCAAAATCCCCCTGTCCATTCGTCAGCGGATCTGCACCACCTTCGATACTGCCAACGCCAAGGGCAAGGACTGGCAGCTCTTAGCTCAGAAACTCCACATTCAGAGGAATCTGTCCTACTTCACCAAACAGAAGAGTCCCTCTGCTGTCATTCTCAGTCTCTGGGAAGCCAGACATCAGGACAGTGGAGATCTTGACTCGCTCGCAAGTGCTTTGGAGGAGATTGGAAAGATTCACTGTAAAAGTCTGCCTCAGAGTCCAGATGAGAACGAAACAGACTTTACGTTTTGA
>TCONS_00058892
TTAAACTGTGCAGAAGCGTGCTAGGGAAAATTCTCATATGTGTTAATTGATTTCACAGGACCCGTTGGTGATGCCCTTGCTGATTCCTTGTCATCAGTTGGTGGGACGTTACCTCACTTCCTGCAAGAGCCTGAGGATGCTTACATAATCAAAAACAACCCGATTAAGCTGCGCTGCCGTGCCACCCCAGCCCTGCAGATATTCTTCAAATGCAACGGGGAATGGGTACATCAAAACCAGCATTCCTCACAAGAGTACATGGATCAAAACACTGACCTCCGCAAGAACTTCGAGCAGGATCCTCAAGGGAAGGAAGTGCCAATCAAGGGCATGATTGTGCTGCATTGCCGTCCCCCAGAGGGAGTGCCCATGGCAAAGgTGGAGTGGTTGAAAAATGAAGAACTGGTCAGCGCACTTGAAGATGACAACATTGACACTCGTGCTGACCACAATCTGATCATCAATGAAGCCAGACTTTCCGACTCTGCCAACTACACCTGCCTCGCCACTAACATCGTCGCAAAAAGACGCAGTACTACAGCTACTGTAGTTGTGTTTGTGAACGGCGGTTGGTCTCTGTGGACTGAGTGGTCTTCCTGCAGTGTGAACTGTGGGAGAGGAGTTCAGAAACGCTCTCGGACCTGCACGAACCCTGCTCCTCTGAACGGAGGGGCTTTCTGCGAGGGCATGTCTGTCCAGAAGATCGCCTGCAAtgcagtctgtccagTGGATGGAGTTTGGGAGGAGTGGAGCGAGTGGACGATGTGTAGTGCGCAGTGTGAGAGACAGCGATGGAGGGAGTGCAACGATCCTCCACCCCGTCACAGAGGCAAGATGTGTGAGGGAGAAGGTCAAAGCACAGAGAACTGCACTGGAGGATTGTGCACGCAAAaTGGAAAGCTGATGCATGATGTTAAGCCACAGAGCATGGAGAACTCAATGGATGTAGCGCTGTACTCTGGTTTGGCTGCGGGTGTGATCGCTGTGGTTGTCCTCATCGTGGCCATTACCCTCTACAGGAAGAGCCAGAGCGAGTATGGAGTGGACGTCATTGACTCATCAGCTCTCGCTGGAGGATTCCAGTCCTTCAACTTCAAAACCACCAGACAGGGCAATCCACTTCTACTGAATTCCTCCATGCAGCCTGATATAACCGTCGGCCAGACCTACAGCAGCCCAATCTGCTTTCAGGACTCCATCGACAAAGAGCTCTTTGACCCCTTGCCCGACAAGGTCAAAGTTCAAAGCTCCTTTATGGTTTCACTAGGTGTGGCAGACCGGGCCGAGTACCATGTAAAAGCTCATCCACAAACCCTCCCTGCAAACCTTCACCCAAACTACAGCATGGTAGAAGGAAAGAAGACGGCCACAATGGCTCCCAATGGACTTCACACCCCCGGGAAGATTCAGCTGAAGACAAGCGCTGTGTTTGGACACCTGGGTGGCCGATTAGTCATTCCAAATGCAGGAGTGAGCTTGCTGGTTCCTCACGGGGCGATTGCTGATGACACCTCTTGGGAAATGTACATGCTCATAAATCAAGGAGAGACTAGtgcCCAATCAGAGGAGAGGTGTGAGATTCTACTGGGGCCAGAGATCACATATGGACCTCCGGGCCTAAGCCTGTCCTGTCCTGTTGCCATGACGATAGCTCATTGTGCTGAAGTCAGCGCCGAAAACTGGAACATTAAACTCAAGAGACAAACCAAGGACAACAAGTGGGAGGAAATAATGTCAGTAGATGATGAATCAACCTCCTGCTATTGCCTGATGGACTCACATAGCTGTCACTTGTTGCTGGATCAGCCGGGCTGTTATGCGCTGGTGGGGGAGCCAATCACCGATGCCGCCATAAAGAGACTAAGGATTGCTGTGTTTGGCAGTATGGAGGCTTCCTCTTTGGACTACAGCCTGCGAGTGCACTGTGTAGACGATACGCCACATGCCTTTCAGGGAGTGGTCACAGCTGAAACCTGCAGAGGAGGTCAGCTTTTAGAAGAGCCCAAGACACTGTTCTTCAAAGGAAACTGCCTCAGTCTGCAGGTGTCCATCCAGGATATCCCTCAGTTTCTGTGGAGCATCAAACCCTTCACCACCTGTCAGGAATTCTCCTTCACCCAAGTGTGGTATAGTAACCAGCAGCCTGTGCACTGTGCCTTCTCACTGCAGAGACATAGCGCCGCCACCAACCAGCTCTCCTGCAAGATCAGTGTGCGGCAGGTCAAAGGTCACGAGCAGATCCTGCAGGTCTACACCTCAGTGGGAGAGaATGAGAAAGAGACAGTCCCATTTTTTATGCAGGCAGATTGCACGGTGACTTCACAGACAGGGGCCAAAGCCTTCAAAATCCCCCTGTCCATTCGTCAGCGGATCTGCACCACCTTCGATACTGCCAACGCCAAGGGCAAGGACTGGCAGCTCTTAGCTCAGAAACTCCACATTCAGAGGAATCTGTCCTACTTCACCAAACAGAAGAGTCCCTCTGCTGTCATTCTCAGTCTCTGGGAAGCCAGACATCAGGACAGTGGAGATCTTGACTCGCTCGCAAGTGCTTTGGAGGAGATTGGAAAGATTCACTGTAAAAGTCTGCCTCAGAGTCCAGATGAGAACGAAACAGACTTTACGTTTTGA
>TCONS_00058893
GATGCCCTTGCTGATTCCTTGTCATCAGTTGGTGGGACGTTACCTCACTTCCTGCAAGAGCCTGAGGATGCTTACATAATCAAAAACAACCCGATTAAGCTGCGCTGCCGTGCCACCCCAGCCCTGCAGATATTCTTCAAATGCAACGGGGAATGGGTACATCAAAACCAGCATTCCTCACAAGAGTACATGGATCAAAACACTGGGGTAAAAATCCGCGAAGTGACGATCAATGTTACCAGGCAGCAGGTGGAGGATTTTCATGGGCCGGAAGACTACTGGTGCCTGTGTGTGGCCTGGAGTCATCTAGGAACATCCAAGAGCCGCAGAGCCACCGTGAGGATAGCCTACCTCCGCAAGAACTTCGAGCAGGATCCTCAAGGGAAGGAAGTGCCAATCAAGGGCATGATTGTGCTGCATTGCCGTCCCCCAGAGGGAGTGCCCATGGCAAAGgTGGAGTGGTTGAAAAATGAAGAACTGGTCAGCGCACTTGAAGATGACAACATTGACACTCGTGCTGACCACAATCTGATCATCAATGAAGCCAGACTTTCCGACTCTGCCAACTACACCTGCCTCGCCACTAACATCGTCGCAAAAAGACGCAGTACTACAGCTACTGTAGTTGTGTTTGTGAACGGCGGTTGGTCTCTGTGGACTGAGTGGTCTTCCTGCAGTGTGAACTGTGGGAGAGGAGTTCAGAAACGCTCTCGGACCTGCACGAACCCTGCTCCTCTGAACGGAGGGGCTTTCTGCGAGGGCATGTCTGTCCAGAAGATCGCCTGCAAtgcagtctgtccagTGGATGGAGTTTGGGAGGAGTGGAGCGAGTGGACGATGTGTAGTGCGCAGTGTGAGAGACAGCGATGGAGGGAGTGCAACGATCCTCCACCCCGTCACAGAGGCAAGATGTGTGAGGGAGAAGGTCAAAGCACAGAGAACTGCACTGGAGGATTGTGCACGCAAAaTGGAAAGCTGATGCATGATGTTAAGCCACAGAGCATGGAGAACTCAATGGATGTAGCGCTGTACTCTGGTTTGGCTGCGGGTGTGATCGCTGTGGTTGTCCTCATCGTGGCCATTACCCTCTACAGGAAGAGCCAGAGCGAGTATGGAGTGGACGTCATTGACTCATCAGCTCTCGCTGGAGGATTCCAGTCCTTCAACTTCAAAACCACCAGACAGGGCAATCCACTTCTACTGAATTCCTCCATGCAGCCTGATATAACCGTCGGCCAGACCTACAGCAGCCCAATCTGCTTTCAGGACTCCATCGACAAAGAGCTCTTTGACCCCTTGCCCGACAAGGTCAAAGTTCAAAGCTCCTTTATGGTTTCACTAGGTGTGGCAGACCGGGCCGAGTACCATGTAAAAGCTCATCCACAAACCCTCCCTGCAAACCTTCACCCAAACTACAGCATGGTAGAAGGAAAGAAGACGGCCACAATGGCTCCCAATGGACTTCACACCCCCGGGAAGATTCAGCTGAAGACAAGCGCTGTGTTTGGACACCTGGGTGGCCGATTAGTCATTCCAAATGCAGGAGTGAGCTTGCTGGTTCCTCACGGGGCGATTGCTGATGACACCTCTTGGGAAATGTACATGCTCATAAATCAAGGAGAGACTAGtgcCCAATCAGAGGAGAGGTGTGAGATTCTACTGGGGCCAGAGATCACATATGGACCTCCGGGCCTAAGCCTGTCCTGTCCTGTTGCCATGACGATAGCTCATTGTGCTGAAGTCAGCGCCGAAAACTGGAACATTAAACTCAAGAGACAAACCAAGGACAACAAGTGGGAGGAAATAATGTCAGTAGATGATGAATCAACCTCCTGCTATTGCCTGATGGACTCACATAGCTGTCACTTGTTGCTGGATCAGCCGGGCTGTTATGCGCTGGTGGGGGAGCCAATCACCGATGCCGCCATAAAGAGACTAAGGATTGCTGTGTTTGGCAGTATGGAGGCTTCCTCTTTGGACTACAGCCTGCGAGTGCACTGTGTAGACGATACGCCACATGCCTTTCAGGGAGTGGTCACAGCTGAAACCTGCAGAGGAGGTCAGCTTTTAGAAGAGCCCAAGACACTGTTCTTCAAAGGAAACTGCCTCAGTCTGCAGGTGTCCATCCAGGATATCCCTCAGTTTCTGTGGAGCATCAAACCCTTCACCACCTGTCAGGAATTCTCCTTCACCCAAGTGTGGTATAGTAACCAGCAGCCTGTGCACTGTGCCTTCTCACTGCAGAGACATAGCGCCGCCACCAACCAGCTCTCCTGCAAGATCAGTGTGCGGCAGGTCAAAGGTCACGAGCAGATCCTGCAGGTCTACACCTCAGTGGGAGAGaATGAGAAAGAGACAGTCCCATTTTTTATGCAGGCAGATTGCACGGTGACTTCACAGACAGGGGCCAAAGCCTTCAAAATCCCCCTGTCCATTCGTCAGCGGATCTGCACCACCTTCGATACTGCCAACGCCAAGGGCAAGGACTGGCAGCTCTTAGCTCAGAAACTCCACATTCAGAGGAATCTGTCCTACTTCACCAAACAGAAGAGTCCCTCTGCTGTCATTCTCAGTCTCTGGGAAGCCAGACATCAGGACAGTGGAGATCTTGACTCGCTCGCAAGTGCTTTGGAGGAGATTGGAAAGATTCACTGTAAAAGTCTGCCTCAGAGTCCAGATGAGAACGAAACAGACTTTACGTTTTGA

Function

symbol description
unc5db Predicted to enable netrin receptor activity. Predicted to be involved in axon guidance. Predicted to act upstream of or within netrin-activated signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Is expressed in brain; hindbrain; telencephalon; and thalamus. Orthologous to human UNC5D (unc-5 netrin receptor D).

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0007411 axon guidance biological_process
GO:0007165 signal transduction biological_process
GO:0038007 netrin-activated signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005042 netrin receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060531-162 Predicted to enable netrin receptor activity. Predicted to be involved in axon guidance. Predicted to act upstream of or within netrin-activated signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Is expressed in brain; hindbrain; telencephalon; and thalamus. Orthologous to human UNC5D (unc-5 netrin receptor D).

Ensembl:

ensembl_id ENSDARG00000061541

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00058891 False 3181 mRNA 0.52 17 27137473 27397612
TCONS_00058892 False 2631 mRNA 0.51 15 27267186 27397612
TCONS_00058893 True 2706 mRNA 0.52 16 27267255 27397612

Neighbor

gene id symbol gene type direction distance location
XLOC_030118 NA coding upstream 46169 27076003 ~ 27091304 (+)
XLOC_030117 NA coding upstream 86014 26949711 ~ 27051459 (+)
XLOC_030116 tm2d2 coding upstream 210946 26921033 ~ 26926527 (+)
XLOC_030115 tbx3b coding upstream 218711 26913120 ~ 26918762 (+)
XLOC_030114 NA coding upstream 230687 26896034 ~ 26906786 (+)
XLOC_030120 hdr coding downstream 7334 27404946 ~ 27415081 (+)
XLOC_030121 cyb561a3a coding downstream 23413 27421025 ~ 27429216 (+)
XLOC_030122 zgc:153409 coding downstream 32260 27429872 ~ 27430247 (+)
XLOC_030123 histh1l coding downstream 35346 27432958 ~ 27434351 (+)
XLOC_030124 loxl2b coding downstream 36989 27434601 ~ 27538745 (+)
XLOC_030106 NA non-coding upstream 656172 26479674 ~ 26481301 (+)
XLOC_030094 dre-mir-204-1 non-coding upstream 1165313 25972068 ~ 25972160 (+)
XLOC_030126 NA non-coding downstream 256638 27654250 ~ 27654718 (+)
XLOC_030132 NA non-coding downstream 884557 28282169 ~ 28292411 (+)
XLOC_030135 NA non-coding downstream 995736 28393348 ~ 28491518 (+)
XLOC_030136 NA non-coding downstream 1100322 28497934 ~ 28503177 (+)
XLOC_030137 NA non-coding downstream 1163391 28561003 ~ 28562137 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000339_04040121_04109097 UNC5DB, UNC5D coding CI01000339 null 4040121 ~ 4109097 (+)
bowfin (Amia calva) AMCG00020913 LOC102294053 coding CM030127.1 CM030127.1 36284882 ~ 36326829 (-)