XLOC_030120 (hdr)


Basic Information

Item Value
gene id XLOC_030120
gene name hdr
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 27404946 ~ 27415081 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00058894
CATCAGTAGGATGGCATTGGGACGCAATCTACATTCGGTCATACGGAGAAAGTGAGATAATGATTGGACTACTATGAGATACATTACTTTATTGGTTTTGCTGTTACTAAATGTCATAAATGCTGCTAGAAGTCATGGGGATCTGGCCTGGGCTCACAGATCTGTCAAGAACAGATTAAGCCGAGATGTTTCATGCAGGGAAGGCTTGGAATATCCACATGAAAACATCTGCTGTCTAAACTGCCCTGCTGGAACCTATGTGAAAAAAGCTTGTGCTGCTGCTGCAGAAAAAGGAGTGTGTGCACCTTGTGAGTTTGACACATATACTGAACATGACCATGGATTGTTAAAGTGCATATCTTGCGACAAGTGCCGTATAGACCAGGAAACCATAGAGAAATGCACAAGCACCCAGAACACAAGGTGCAAGTGCAGAAATGGGTCATTTTGTTTGCCTGACCAGGCTTGTGAGGTGTGCAAGAAATGCAGCAGATGCAAAGAGGATGAAGAAACTGAAAAAAGCTGCACAGCCATTTCAAACACAGTCTGTAGAAAGAGAAGCTCTCCGGGAAGCTCCACCTCAATGACTTTCATTGTTATCATGCCATTAATTGTATTGCTGGCATGCGTTTTGTGCATCGTCTACTGgacaaagtcaaaacaaaataaaacagcagTAACATCACGAAGTCCAAGGGAGATGGTTAAGATCTGTATGGGTGACAGTGAGGAGGTCAGAGAGGAGAAGCAGAATGATCACAACTCCAGGATTGATGACTCCTCTCAGCTCCAGCCGTTCCTCGAGCAAAACTATGTGGAAAGCGAGTCATCAAGAAGACTTGTTCCTTTGAGCGGTGAAGAATCCTTGAAGAAAACTTTTGATTTCTTTGAAGAAATTGATGTCCATTATCATAACCGATTCTTCAGGCTGATTGGACTGAGTGATAATGCCATCAAAAGCGCTGAGTCACTTTTTCCAGAAGACAGAGTTTACGAACTATTAAAAATCTGGATGGAAAAGGAAGGACTGAAGGCAGATTTCAACAGTCTTATTGACGCATTAATTTATTTAGACCAGAGGCTGTCAGCAGAAAATATCATTGCAAAGGCAATAAATAATAGTTGCTTTAAATATGAAGAAGAGTGACTGAATGCTACTATTGTCACCCTCTTAGCATTCTCAGTGGACGAAGGTACAGTATGCTTTTCAGTTTCATTTTGTCCATTGCTAAAGTGTTTCTCTGACAAGGTATTTATTATGTTAGCAAATGTTTAAACTTTTAGATTAGTTGGTCACGAACAttagttacatttaaaatgacaaaacaaagtATTTAAGACATCTGAGGTTATGAAATTTGTAGTCAGAAACTtggcaatgttttttttctttttcttttcatgttgTATATATTTGATGTGTGCCATGTGATAATTTTGT
>TCONS_00058895
CATCAGTAGGATGGCATTGGGACGCAATCTACATTCGGTCATACGGAGAAAGTGAGATAATGATTGGACTACTATGAGATACATTACTTTATTGGTTTTGCTGTTACTAAATGTCATAAATGCTGCTAGAAGTCATGGGGATCTGGCCTGGGCTCACAGATCTGTCAAGAACAGATTAAGCCGAGATGTTTCATGCAGGGAAGGCTTGGAATATCCACATGAAAACATCTGCTGTCTAAACTGCCCTGCTGGAACCTATGTGAAAAAAGCTTGTGCTGCTGCTGCAGAAAAAGGAGTGTGTGCACCTTGTGAGTTTGACACATATACTGAACATGACCATGGATTGTTAAAGTGCATATCTTGCGACAAGTGCCGTATAGACCAGGAAACCATAGAGAAATGCACAAGCACCCAGAACACAAGGTGCAAGTGCAGAAATGGGTCATTTTGTTTGCCTGACCAGGCTTGTGAGGTGTGCAAGAAATGCAGCAGATGCAAAGAGGATGAAGAAACTGAAAAAAGCTGCACAGCCATTTCAAACACAGTCTGTAGAAAGAGAAGCTCTCCGGGAAGCTCCACCTCAATGACTTTCATTGTTATCATGCCATTAATTGTATTGCTGGCATGCGTTTTGTGCATCGTCTACTGgacaaagtcaaaacaaaataaaacagcagTAACATCACGAAGTCCAAGGGAGATGGTTAAGATCTGTATGGGTGACAGTGAGGAGGTCAGAGAGGAGAAGCAGAATGATCACAACTCCAGGATTGATGACTCCTCTCAGCTCCAGCCGTTCCTCGAGCAAAACTATGTGGTGGGTACCAGTGTTCCCCATCCATCAGAGGCAGAAAAAGACAAGGGGCTAGGTGACAGTCTTCCTAACACCGCCAACTCTTCacaaactagtctggccatttGTGCTGTGCCCAGTGATCTGCAGTCCTGCCACACTAACCAGTCAAGCAGCTCTGTACTTGCCTGGCAGCCTCCTGCTTTGGAAAGCGAGTCATCAAGAAGACTTGTTCCTTTGAGCGGTGAAGAATCCTTGAAGAAAACTTTTGATTTCTTTGAAGAAATTGATGTCCATTATCATAACCGATTCTTCAGGCTGATTGGACTGAGTGATAATGCCATCAAAAGCGCTGAGTCACTTTTTCCAGAAGACAGAGTTTACGAACTATTAAAAATCTGGATGGAAAAGGAAGGACTGAAGGCAGATTTCAACAGTCTTATTGACGCATTAATTTATTTAGACCAGAGGCTGTCAGCAGAAAATATCATTGCAAAGGCAATAAATAATAGTTGCTTTAAATATGAAGAAGAGTGACTGAATGCTACTATTGTCACCCTCTTAGCATTCTCAGTGGACGAAGGTACAGTATGCTTTTCAGTTTCATTTTGTCCATTGCTAAAGTGTTTCTCTGACAAGGTATTTATTATGTTAGCAAATGTTTAAACTTTTAGATTAGTTGGTCACGAACAttagttacatttaaaatgacaaaacaaagtATTTAAGACATCTGAGGTTATGAAATTTGTAGTCAGAAACTtggcaatgttttttttctttttcttttcatgttgTATATATTTGATGTGTGCCATGTGATAATTTTGTTAACTAATAAAggaattcattta

Function

symbol description
hdr Acts upstream of or within positive regulation of apoptotic process and positive regulation of cysteine-type endopeptidase activity involved in apoptotic process. Located in plasma membrane. Is expressed in axis; hematopoietic system; mesoderm; and notochord. Human ortholog(s) of this gene implicated in carcinoma (multiple); cervical cancer; hematologic cancer (multiple); and urinary bladder cancer. Orthologous to several human genes including TNFRSF10A (TNF receptor superfamily member 10a) and TNFRSF10B (TNF receptor superfamily member 10b).

GO:

id name namespace
GO:0043280 positive regulation of cysteine-type endopeptidase activity involved in apoptotic process biological_process
GO:0043065 positive regulation of apoptotic process biological_process
GO:0036462 TRAIL-activated apoptotic signaling pathway biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0009986 cell surface cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030826-5 Acts upstream of or within positive regulation of apoptotic process and positive regulation of cysteine-type endopeptidase activity involved in apoptotic process. Located in plasma membrane. Is expressed in axis; hematopoietic system; mesoderm; and notochord. Human ortholog(s) of this gene implicated in carcinoma (multiple); cervical cancer; hematologic cancer (multiple); and urinary bladder cancer. Orthologous to several human genes including TNFRSF10A (TNF receptor superfamily member 10a) and TNFRSF10B (TNF receptor superfamily member 10b).

Ensembl:

ensembl_id ENSDARG00000004392

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00058894 False 1441 mRNA 0.40 10 27404946 27415058
TCONS_00058895 True 1647 mRNA 0.41 10 27404946 27415081

Neighbor

gene id symbol gene type direction distance location
XLOC_030119 unc5db coding upstream 7334 27137473 ~ 27397612 (+)
XLOC_030118 NA coding upstream 313642 27076003 ~ 27091304 (+)
XLOC_030117 NA coding upstream 353487 26949711 ~ 27051459 (+)
XLOC_030116 tm2d2 coding upstream 478419 26921033 ~ 26926527 (+)
XLOC_030115 tbx3b coding upstream 486184 26913120 ~ 26918762 (+)
XLOC_030121 cyb561a3a coding downstream 5944 27421025 ~ 27429216 (+)
XLOC_030122 zgc:153409 coding downstream 14791 27429872 ~ 27430247 (+)
XLOC_030123 histh1l coding downstream 17877 27432958 ~ 27434351 (+)
XLOC_030124 loxl2b coding downstream 19520 27434601 ~ 27538745 (+)
XLOC_030125 zmat4a coding downstream 168036 27583117 ~ 27743830 (+)
XLOC_030114 NA non-coding upstream 498160 26896034 ~ 26906786 (+)
XLOC_030106 NA non-coding upstream 923645 26479674 ~ 26481301 (+)
XLOC_030094 dre-mir-204-1 non-coding upstream 1432786 25972068 ~ 25972160 (+)
XLOC_030126 NA non-coding downstream 239169 27654250 ~ 27654718 (+)
XLOC_030132 NA non-coding downstream 867088 28282169 ~ 28292411 (+)
XLOC_030135 NA non-coding downstream 978267 28393348 ~ 28491518 (+)
XLOC_030136 NA non-coding downstream 1082853 28497934 ~ 28503177 (+)
XLOC_030137 NA non-coding downstream 1145922 28561003 ~ 28562137 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000339_04114570_04117684 NA coding CI01000339 null 4114570 ~ 4117873 (+)