XLOC_030126


Basic Information

Item Value
gene id XLOC_030126
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 27654250 ~ 27654718 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00061436
TGTGTAGACGTATATTCAGACATGTAATTATCTTCAGCTTTGCACATGGCTTTAGAATAAGTGAGCCACACATATCTGACAAATCGCATTGGAGATTAAATCTGGAGGGATACAGCTGAGTCAGGGCTTTTCTTTGGCGTTTTCCTATAGAAGAGTACTGGATGTCATTTCCCTGTTCCAGCAGCTATCAATATTGCCCATGTACGCACATGCTTGTGGGTTTTTCCTTTTAGATACTGGATTTGCtgtttgaatatatttatatattctgtaaaatcaacatttatatattacaaTACATGACAGGCAGTGTGTTTGTAAAATTGTATGGACTTTCAAGAGAAATATAGGACTGTCAAGGTGAAATTATAATAACACACCAGAATGCCTTGAATGTCAGTATAGTAATGCACTCATTAATTAAATATCTAAGTGATGACATTGAATTTAGAAAATTGttgttaataca

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00061436 True 469 lncRNA 0.34 1 27654250 27654718

Neighbor

gene id symbol gene type direction distance location
XLOC_030124 loxl2b coding upstream 115505 27434601 ~ 27538745 (+)
XLOC_030123 histh1l coding upstream 219899 27432958 ~ 27434351 (+)
XLOC_030122 zgc:153409 coding upstream 224003 27429872 ~ 27430247 (+)
XLOC_030121 cyb561a3a coding upstream 225034 27421025 ~ 27429216 (+)
XLOC_030120 hdr coding upstream 239169 27404946 ~ 27415081 (+)
XLOC_030127 adam28 coding downstream 242786 27897504 ~ 27920706 (+)
XLOC_030128 ogfod2 coding downstream 387249 28041967 ~ 28047353 (+)
XLOC_030129 tacr1a coding downstream 505785 28160503 ~ 28213627 (+)
XLOC_030130 ncaph coding downstream 604937 28259655 ~ 28270945 (+)
XLOC_030131 vamp8 coding downstream 616694 28271412 ~ 28279364 (+)
XLOC_030118 NA non-coding upstream 562946 27076003 ~ 27091304 (+)
XLOC_030117 NA non-coding upstream 602791 26949711 ~ 27051459 (+)
XLOC_030114 NA non-coding upstream 747464 26896034 ~ 26906786 (+)
XLOC_030106 NA non-coding upstream 1172949 26479674 ~ 26481301 (+)
XLOC_030094 dre-mir-204-1 non-coding upstream 1682090 25972068 ~ 25972160 (+)
XLOC_030132 NA non-coding downstream 627451 28282169 ~ 28292411 (+)
XLOC_030135 NA non-coding downstream 738630 28393348 ~ 28491518 (+)
XLOC_030136 NA non-coding downstream 843216 28497934 ~ 28503177 (+)
XLOC_030137 NA non-coding downstream 906285 28561003 ~ 28562137 (+)
XLOC_030140 zgc:174260 non-coding downstream 1157735 28812453 ~ 28818613 (+)

Expression


Co-expression Network