XLOC_030122 (zgc:153409)


Basic Information

Item Value
gene id XLOC_030122
gene name zgc:153409
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 27429872 ~ 27430247 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00058898
ATATTGACTTCGCGGATCGAGATTAAGAGTACGTAATCATGTCTGGACGAGGCAAAGGCGGCAAAGGGCTCGGAAAAGGTGGCGCTAAACGCCATCGTAAAGTTCTTAGAGACAACATCCAAGGCATTACAAAGCCGGCTATTCGCCGTCTAGCGCGTCGTGGCGGTGTAAAGCGTATTTCTGGTCTGATCTATGAAGAGACTCGAGGTGTGCTGAAAGTGTTCCTGGAAAACGTCATTCGCGACGCTGTGACCTACACTGAGCACGCTAAGCGCAAGACTGTGACCGCTATGGACGTAGTATACGCTCTGAAGCGCCAAGGCCGTACATTGTATGGTTTCGGCGGTTAAACTCCACTGGACccagttttaaaaaa

Function

symbol description
zgc:153409 Predicted to enable DNA binding activity and protein heterodimerization activity. Predicted to be located in chromosome and nucleus. Predicted to be part of nucleosome.

GO:

id name namespace
GO:0000786 nucleosome cellular_component
GO:0005634 nucleus cellular_component
GO:0005694 chromosome cellular_component
GO:0003677 DNA binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060929-224 Predicted to enable DNA binding activity and protein heterodimerization activity. Predicted to be located in chromosome and nucleus. Predicted to be part of nucleosome.

Ensembl:

ensembl_id ENSDARG00000061547

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00058898 True 376 mRNA 0.50 1 27429872 27430247

Neighbor

gene id symbol gene type direction distance location
XLOC_030121 cyb561a3a coding upstream 656 27421025 ~ 27429216 (+)
XLOC_030120 hdr coding upstream 14791 27404946 ~ 27415081 (+)
XLOC_030119 unc5db coding upstream 32260 27137473 ~ 27397612 (+)
XLOC_030118 NA coding upstream 338568 27076003 ~ 27091304 (+)
XLOC_030117 NA coding upstream 378413 26949711 ~ 27051459 (+)
XLOC_030123 histh1l coding downstream 2711 27432958 ~ 27434351 (+)
XLOC_030124 loxl2b coding downstream 4354 27434601 ~ 27538745 (+)
XLOC_030125 zmat4a coding downstream 152870 27583117 ~ 27743830 (+)
XLOC_030126 NA coding downstream 224003 27654250 ~ 27654718 (+)
XLOC_030127 adam28 coding downstream 467257 27897504 ~ 27920706 (+)
XLOC_030114 NA non-coding upstream 523086 26896034 ~ 26906786 (+)
XLOC_030106 NA non-coding upstream 948571 26479674 ~ 26481301 (+)
XLOC_030094 dre-mir-204-1 non-coding upstream 1457712 25972068 ~ 25972160 (+)
XLOC_030132 NA non-coding downstream 851922 28282169 ~ 28292411 (+)
XLOC_030135 NA non-coding downstream 963101 28393348 ~ 28491518 (+)
XLOC_030136 NA non-coding downstream 1067687 28497934 ~ 28503177 (+)
XLOC_030137 NA non-coding downstream 1130756 28561003 ~ 28562137 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G483289 NA non-coding CI01000339 null 4122523 ~ 4122918 (-)