AMCG00020955 (LOC108426712,LOC103357663,LOC100712487,LOC106536361)


Basic Information

Item Value
gene id AMCG00020955
gene name LOC108426712,LOC103357663,LOC100712487,LOC106536361
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 38226246 ~ 38228104 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020955
ATGGAGGGCAGTGGCAGTGGCTGGTGGCCGGGAGTGGTGCCCTCCATTGGCACAGTGGAGAACAGCAGCCGGCGTGTGTTCGAGGTGGCGCTACAGAATAGCTCTTCCAATAGCAGCTCCCAGTTTGCGGGTGTGGAGCTCCTGCAGTCCTTCAAGCCCCTGATCATCCCCTCCTACGCCTTGGTGGTGCTGGTGGGCATCTTCGGCAACTACCTGCTGCTGTACGTCATCTGTCGCACCCGCAAGATGCACAACGTCACCAACTTCTTCATTGGGAACCTGGCCTTCTCTGACATGCTGATGTGCGCCACCTGTGTGCCCTTCACCCTGGCCTACGCCTTCAACCCACGCGGCTGGGTGTTTGGCCGCTTCATGTGCTACCTGGTGTTCCTCATCCAGCCCGTGACCGTCTATGTGTCCGTGTTCACACTCACCGCCATTGCTGTCGACAGGTACTACGCCACCGTGCACCCTCTGAAGAAGCGGATCTCAGTACCAGCCTGTACCTATGTGCTGGCGGGCATCTGGCTCCTCTCTTGCGGGCTGGTGGCACCCGCCATCGCCCACACCTACCATGTGGAGTTCCAGGAGGAGGGCTTCACCATCTGTGAGGAGTTCTGGATGGGCCAGGAACAAGAGCGGCTGGCCTATGCCTATAGCACCCTCATCATGACCTACATCCTGCCTCTTTCGGCCCTGAGCATCTCCTACCTGTGCATCTCTGTCAAGCTGCGAAACTGCGTGGTGCCCGGGCACCCCACACAGAGTCAGGCTGAGGCCCAGCGCGCCCGCAAGCGCAAGATCTTCCGGCTAGTGGCCCTGGTGGTGGCAGCCTTCGGGATCTGCTGGTTGCCCATCCACGTGTTCAACGTGCTGCGTGACATCGACATCAACCTGATCGACAAGCACTACTTCCTGCTCATCCAGCTGCTGTGCCACTGGTGCGCCATGAGCTCGGCCTGCTGCAACCCCTTCCTGTACGCCTGGCTGCACGACCGCTTTCGAGCAGAGCTGCGGAAGATGTTCGCCTGCCGTCGCCGCATCGGCATCCCCGCCAACAACTGCGCCACGGCCAGCGTGGTGCTCTAA

Function

NR:

description
PREDICTED: prolactin-releasing peptide receptor-like

GO:

id name namespace
GO:0007218 neuropeptide signaling pathway biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004983 neuropeptide Y receptor activity molecular_function

KEGG:

id description
K14071 LKR; leucokinin receptor

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020955 True 1089 mRNA 0.61 2 38226246 38228104

Neighbor

gene id symbol gene type direction distance location
AMCG00020950 NA coding upstream 114347 38106012 ~ 38111899 (+)
AMCG00020951 NA coding upstream 194280 38030728 ~ 38031966 (+)
AMCG00020946 anxa4,LOC107583400,LOC107758674,LOC107689041,LOC107558128 coding upstream 303792 37906271 ~ 37922454 (+)
AMCG00020944 antxr1a,antxrl,LOC107553121,LOC107661337,LOC107562635,LOC106585598 coding upstream 509166 37712999 ~ 37717080 (+)
AMCG00020945 antxr1,LOC108236442,LOC103362313 coding upstream 540750 37669962 ~ 37685496 (+)
AMCG00020956 NA coding downstream 31414 38259518 ~ 38275155 (+)
AMCG00020962 rhobtb2,LOC106585588 coding downstream 263608 38491712 ~ 38516342 (+)
AMCG00020963 egr3,LOC106579855,LOC106585589 coding downstream 460059 38688163 ~ 38694505 (+)
AMCG00020964 NA coding downstream 528631 38756735 ~ 38772815 (+)
AMCG00020965 NA coding downstream 556775 38784879 ~ 38812254 (+)
G66826 NA non-coding upstream 160581 37974803 ~ 38065665 (+)
G66801 NA non-coding upstream 363914 37837102 ~ 37862332 (+)
G66784 NA non-coding upstream 487058 37737732 ~ 37739188 (+)
G66780 NA non-coding upstream 575548 37650429 ~ 37650698 (+)
G66739 NA non-coding upstream 730865 37495121 ~ 37495381 (+)
G66861 NA non-coding downstream 12586 38240690 ~ 38244475 (+)
G66865 NA non-coding downstream 47886 38275990 ~ 38276294 (+)
G66887 NA non-coding downstream 196608 38424712 ~ 38425252 (+)
G66970 NA non-coding downstream 782475 39010579 ~ 39010849 (+)
G66995 NA non-coding downstream 821317 39049421 ~ 39049631 (+)
AMCG00020954 NA other upstream 89173 38117062 ~ 38137073 (+)
AMCG00020942 NA other upstream 650390 37567036 ~ 37575856 (+)
G66551 NA other upstream 1308810 36914815 ~ 36917436 (+)
G66506 NA other upstream 1969735 36254699 ~ 36256511 (+)
G66362 NA other upstream 2317844 35867393 ~ 35908402 (+)
G67108 LOC100846954 other downstream 2093009 40321113 ~ 40321821 (+)
AMCG00020993 atad1,atad1a,LOC105014378,LOC108414574,LOC106580455,LOC103365845,LOC107087860,LOC102796919,LOC101479261,LOC100705680,LOC106527948,LOC105919473 other downstream 2327862 40555966 ~ 40570215 (+)
AMCG00021005 LOC106580519 other downstream 2823368 41051472 ~ 41062527 (+)
G67323 NA other downstream 3370119 41598223 ~ 41602113 (+)
G67459 NA other downstream 3824826 42052930 ~ 42053675 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_002410 prlhr2b coding NC_007121.7 CM002894.2 41252525 ~ 41260567 (+)
grasscarp (Ctenopharyngodon idella) CI01000158_00367178_00367774 PRLHR2A, PRLHR2B coding CI01000158 null 367103 ~ 367851 (+)