AMCG00020969 (bmp1,LOC103470513,LOC103145852)


Basic Information

Item Value
gene id AMCG00020969
gene name bmp1,LOC103470513,LOC103145852
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 38984877 ~ 39004829 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020969
AGGCATCTTCTTGGACACCATCATGCCTCGCTACGATGTGAACGGAGTGCGCCCCCCCATCGGTCAGAGAACGAGGCTCACATGTGGTGACAGTCTGCAAGACAGCAGTGGGAATTTTTCCTCGCCAGGATTCCCCAATGGATATGGCGCCTACATGAGCTGCATCTGGAGGATATCTGTCACTCCTGGAGAAAAGATCATTCTGAACTTCACCTCTATGGATCTGTACCGCAGCCACCTGTGCTGGTATGACCATGTGGAGATCCGAGATGGGTTCTGGAAGAAAGCTCCTTTAAAAGGTCGCTTTTGTGGGGACAAACTCCCTGAACCCATCATCTCTACTGACAGTCGGCTCTGGATTGAGTtccgcagcagcagcaactgGGTTGGGAAAGGATTCTCTGCTGTGTATGAAGCTATCTGTGGTGGAGAGGTGAGGAGAGACAATGGGCAAATCCAGTCTCCAAACTACCCTGATGACTACCGGCCcaacaaagtgtgtgtgtggaagatCACTGTTGCTCAGGGCTTCCATGTAGGACTCACCTTTCAGTCATTTgagATCGAGAGACATGACAGCTGTGCCTATGACTATTTGGAAGTCAGAGATGGCACAACAGAAAGTAGTCCTCTTCTGGGGCGGTTTTGTGGCTACGACAAGCCCGACGACATCAAGACCAGCTCCAACCAGCTCTGGATGAAGTTTGTCTCTGATGGTTCAGTCAACAAGGCAGGGTTTGCTGCCAACTTCTTCAAAGAGATGGACGAGTGCTCGAAACCTGACAACGGGCGTTGTGAACAGCGCTGCGTCAACACCCTGGGCAGCTACAAGTGTGCCTGTGACCCAGGATATGAACTGGCTTCAGACAAGCGCAGCTGTGAGGctgcCTGTGGAGGGTTTATTACTAAGCTCAATGGCTCAATCACTAGTCCAGGCTGGCCCCGTGAATACCCGCCCAACAAGAACTGCATCTGGCAACTGGTGGCTCCTACCCAGTACCGCATCACACTGCAGTTTGACGTTTTTGAGACAGAGGGCAACGATGTATGCAAATATGATTATGTGGAAGTGCGTAGCGGACTCTCTGCTGACTCCAAGCTTCACGGGAAGTTTTGTGGCTCGGAGAAACCCGAAGTCATCACCTCACAGTACAACAACATGCGCATCGAGTTTAAGTCAGACAACACTGTGTCCAAGAAAGGCTTCAAGGCCCACTTCTTCTCTGACAAGGATGAGTGTTCGAAGGAGAATGGAGGCTGTCAGCACGAGTGCGTGAACACCTTCGGCAGTTACTCATGCCAGTGTCGGAGCGGCTTCACTCTGCACGACAACAAACACGACTGCAAGGAAGCTGGCTGCGATCACAAAGTGACTACCGTGTCCGGTACCATAACGAGCCCCAACTGGCCTGACAAATACCCCAGCAAGAAAGCCTGCTCCTGGGCTATCTCTATCACTCCAGGACACCGCATCAAATTTTCCTTCAATGAGATCGATATGGAGGCCCACATGGAGTGTGCCTACGACCACGTGGAAATCTTCGACGGGCGTGACGCCAAAGCAACAAGCATGGGAAAATTCTGTGGCACCAAGAAGCCCCAGCCCCTCATCTCCAGTACCAACAAGATGTTCATCAAGTTCTTCTCAGACAACTCGGTGCAGAAGAAGGGCTTTGAGGCATCCCATGCTCCAGAATGCGGAGGAAGGCTGAAGGCTGAAGTCAAGACAAAGGACTTGTTTTCCCATGCCCAGTTTGGGGACAATAACTACCCTGGAGGTTCCGACTGCCAGTGGGTGATAACCAGTGAAAAGGGTTACGGAGTGGAGCTCATCTTCCAGACTTTCGAGATCGAAGAGGAAGCGGACTGCGGCTATGACTACATGGAACTCTTCGACGGAAACGATGTCAAAGCGCCTAGATTGGGACGCTACTGTGGCTCTGGGCCCCCTGAAGAGATCTACTCCACCAGCGATTCCATCATGATCAAGTTCCGCTCTGACGACACCATCCACAAGAAGGGCTTTCACGTGCGCTACACCAGCACCAAATTCCAGGACACACTGCACTCATTTAAGGGGGGGAGGGCAGGGTGGTTAGGGCGGCGGAGCAGCGGAGGGGGGTGGAGGGCCTGGGGGAGAAACGCCAAGCGTCCCACGTCTGTAGGGTTCCAGCCGCCAAGTCGAAAAACCACCGCCAACAAAGAGGGGAACAAAACCAACCGAACCTCTGAGAGCAGAAGCAAGGGGGTCAGCCCCCTGACTGTGAGGATT

Function

symbol description
bmp1 Enables identical protein binding activity and peptidase activity. Involved in proteolysis. Acts upstream of or within positive regulation of cartilage development. Predicted to be located in extracellular region. Implicated in osteogenesis imperfecta type 13.

NR:

description
bone morphogenetic protein 1

GO:

id name namespace
GO:0001503 ossification biological_process
GO:0048264 determination of ventral identity biological_process
GO:0006508 proteolysis biological_process
GO:0033333 fin development biological_process
GO:0005509 calcium ion binding molecular_function
GO:0005515 protein binding molecular_function
GO:0004222 metalloendopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020969 True 2272 mRNA 0.53 15 38984877 39004829

Neighbor

gene id symbol gene type direction distance location
AMCG00020968 LOC106579847,LOC108236587,LOC105014870 coding upstream 12593 38953485 ~ 38972284 (+)
AMCG00020966 NA coding upstream 83272 38898945 ~ 38901605 (+)
AMCG00020967 LOC108444561,LOC104924995,LOC105889889 coding upstream 99770 38880596 ~ 38885107 (+)
AMCG00020965 NA coding upstream 172623 38784879 ~ 38812254 (+)
AMCG00020964 NA coding upstream 212062 38756735 ~ 38772815 (+)
AMCG00020972 atp6v1b2,LOC108277294,LOC106563054,LOC103034689,LOC105890663 coding downstream 7882 39012711 ~ 39027527 (+)
AMCG00020973 NA coding downstream 42431 39047260 ~ 39061811 (+)
AMCG00020978 NA coding downstream 610625 39615454 ~ 39617163 (+)
AMCG00020976 NA coding downstream 612479 39617308 ~ 39686318 (+)
AMCG00020981 NA coding downstream 796450 39801279 ~ 40063685 (+)
G66887 NA non-coding upstream 559625 38424712 ~ 38425252 (+)
G66865 NA non-coding upstream 708583 38275990 ~ 38276294 (+)
G66861 NA non-coding upstream 740402 38240690 ~ 38244475 (+)
G66826 NA non-coding upstream 919212 37974803 ~ 38065665 (+)
G66801 NA non-coding upstream 1122545 37837102 ~ 37862332 (+)
G66970 NA non-coding downstream 5750 39010579 ~ 39010849 (+)
G66995 NA non-coding downstream 44592 39049421 ~ 39049631 (+)
G67027 NA non-coding downstream 300468 39305297 ~ 39305587 (+)
G67048 NA non-coding downstream 744328 39749157 ~ 39749361 (+)
G67180 NA non-coding downstream 1565498 40570327 ~ 40571722 (+)
AMCG00020954 NA other upstream 847804 38117062 ~ 38137073 (+)
AMCG00020942 NA other upstream 1409021 37567036 ~ 37575856 (+)
G66551 NA other upstream 2067441 36914815 ~ 36917436 (+)
G66506 NA other upstream 2728366 36254699 ~ 36256511 (+)
G66362 NA other upstream 3076475 35867393 ~ 35908402 (+)
G67108 LOC100846954 other downstream 1316284 40321113 ~ 40321821 (+)
AMCG00020993 atad1,atad1a,LOC105014378,LOC108414574,LOC106580455,LOC103365845,LOC107087860,LOC102796919,LOC101479261,LOC100705680,LOC106527948,LOC105919473 other downstream 1551137 40555966 ~ 40570215 (+)
AMCG00021005 LOC106580519 other downstream 2046643 41051472 ~ 41062527 (+)
G67323 NA other downstream 2593394 41598223 ~ 41602113 (+)
G67459 NA other downstream 3048101 42052930 ~ 42053675 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location