G64730 (hsbp1,LOC102784925,LOC102222837,LOC103023435)


Basic Information

Item Value
gene id G64730
gene name hsbp1,LOC102784925,LOC102222837,LOC103023435
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 27415996 ~ 27418520 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU80958
GCGAGATGTTGCGCCGCAGCGTCGGGAGTTTAGTTAGCGATACGGAGAGCGTTCTCTAATTTCCCAACGTAAACCCAACGCTGTGCCGGTTATTGACACTGTTTAGACCCCCGGAAACACCTCGTCCAAAAACATGTCAGAAACGGATCCCAAGTCGGTGCAAGACCTCACGGCGGTGGTTCAGACATTGCTTCAGCAGATGCAGGACAAGTTCCAGACTATGTCAGACCAGATCATCGGAAGAATCGATGAGATGAGCACTCGCATTGATGACCTGGAGAAGAATATCGCAGACCTGATGACCCAGGCTGGGGTGGAGGAGATAGAGGGAGGAGAAAAGGTTGCCAAATAACACAGCAGGGTACAGAACAATTTCTACAAGATAACttttttcaaagtattttgattttttttttatttcaaatcagatgtgtaaattttttttttttttttttttaatattgattctTGTAATAATGGTTGCATTCCTGACATACTGActgtaatttagtattttttttttcttatatggATATTTTGCAGAACTTTTCAAAACCCTAAGATATAAAATCCCTAACTTGTTGAAAGCTGACGCTAGTAATGTGAACAGCACTACTCAAATGCCAAGTGGAGAAGGTTccattttgttcaaataaaagcaatttcCTACAAAGGTTGTGCTCCTTTTATTGTGAGAAGAAATAGATGC

Function

symbol description
hsbp1 Enables identical protein binding activity. Involved in axonal transport of mitochondrion. Predicted to be located in nucleoplasm. Predicted to be active in cytosol and nucleus.

NR:

description
PREDICTED: putative aminopeptidase W07G4.4, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU80958 True 709 TUCP 0.40 4 27415996 27418520

Neighbor

gene id symbol gene type direction distance location
AMCG00020640 kcng4 coding upstream 62261 27337045 ~ 27353735 (+)
AMCG00020642 NA coding upstream 103589 27311954 ~ 27312407 (+)
AMCG00020641 NA coding upstream 104112 27280112 ~ 27311884 (+)
AMCG00020637 LOC107583916 coding upstream 160218 27245976 ~ 27255778 (+)
AMCG00020636 has3,LOC106573695 coding upstream 172983 27235837 ~ 27243013 (+)
AMCG00020648 NA coding downstream 63128 27481648 ~ 27499322 (+)
AMCG00020654 NA coding downstream 712314 28130834 ~ 28139439 (+)
AMCG00020656 NA coding downstream 768277 28186797 ~ 28196588 (+)
AMCG00020655 wtip,LOC103374096,LOC106587570,LOC106536369,LOC106562378 coding downstream 801223 28219743 ~ 28226791 (+)
AMCG00020660 kiaa0355,LOC102798860 coding downstream 876317 28294837 ~ 28316749 (+)
G64702 NA non-coding upstream 171887 27243120 ~ 27244109 (+)
G64603 NA non-coding upstream 980882 26433840 ~ 26435114 (+)
G64601 NA non-coding upstream 983843 26431674 ~ 26432153 (+)
G64561 NA non-coding upstream 1198866 26216632 ~ 26217130 (+)
G64559 NA non-coding upstream 1202268 26213377 ~ 26213728 (+)
G64823 NA non-coding downstream 910460 28328980 ~ 28415277 (+)
G64829 LOC107695930,LOC107555682,LOC107679971,LOC106573260,LOC106561533 non-coding downstream 920515 28339035 ~ 28342230 (+)
G64894 NA non-coding downstream 1519368 28937888 ~ 28938164 (+)
G64916 NA non-coding downstream 1630973 29049493 ~ 29049815 (+)
G64957 LOC103376870 non-coding downstream 1841034 29259554 ~ 29339283 (+)
AMCG00020621 LOC105904655 other upstream 1319039 26055287 ~ 26096957 (+)
AMCG00020603 NA other upstream 1637014 25762135 ~ 25778982 (+)
G64372 NA other upstream 1862676 25550911 ~ 25553320 (+)
AMCG00020585 NA other upstream 1943110 25459096 ~ 25472886 (+)
AMCG00020573 NA other upstream 2331123 25078142 ~ 25084873 (+)
G64887 NA other downstream 1455110 28873630 ~ 28874072 (+)
G64908 NA other downstream 1590143 29008663 ~ 29009601 (+)
G64979 NA other downstream 2046044 29464564 ~ 29465712 (+)
AMCG00020684 NA other downstream 2085707 29504227 ~ 29575346 (+)
AMCG00020697 dynlrb2,LOC106573385,LOC103025073 other downstream 3114673 30533193 ~ 30536564 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location