AMCG00021352 (ddx26b,ints6l,LOC107601122,LOC107560701)


Basic Information

Item Value
gene id AMCG00021352
gene name ddx26b,ints6l,LOC107601122,LOC107560701
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 15434040 ~ 15462050 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021352
atatacacacatatatatatacacgccCAGGCCGCGACTAGAGCTCCTATGATAGTTTTAGGCATTTTTTTGTGaacatatctctctctctatttaaaacaaaaaaaatgcctATTTTACTCTTCCTCATAGACACGTCCGCTTCTATGAACCAGCGGACCTATTTGGGTACGACGTATCTGGACATTGCTAAAGGCGCGGTTGAGATCTTTATGAAGCTACGTGCCCGAGACCCGGCTAGTAGAGGCGACAGGTACATGCTAGTTACATTTGATGAGCCACCATACGGAGTTAAGGCTGGCTGGAAGGAGAACCACGCCACGTTCATGAATGAGCTGAAGAACCTGCATGCCTCAGGGCTGACCACACTGGGCCAGGCCCTGCGCTCCTCCTTCGACCTACTCAACCTCAACCGCCTCGTGTCTGGCATAGACAACTACGGACAGGGCCGTAACCCTTTCTTCCTGGAGCCATCAGTAATTATCACCATTACAGATGGGAGCAAGCTGACGCACAACTCTGGTGTGCAAGAGGAACTCCATCTGCCTCTCAACTCCCCTCTGCCGGGCAGCGAGCTAACAAAGGAGCCGTTCCGGTGGGATCAGCGTCTATTCGCACTGGTGCTGCGGCTGCCGGGCGCCTCCTCCCCCGAGACTGAGCCCCTGGGCAGCGTCCCCACCGACGAGTCCGCCATCACCCAGATGTGCGAGGTCACTGGGGGCCGGTCCTACTGCGTCCGCACCCAGAGGATGTTGAATCAGTGTCTGGAGTCACTGGTGCAGAAGGTGCAGAGTGGAGTCGTGATCAACTTTGAAAAAGCCGGTCCAGACCCGCCTCTGGTAGGAGAAGACGGTATTGTGGACCCAGCCCGGCCTGTGTCGTCCTTCAGCCCGCAGCCCTGGCACAGCTGCCACAAGCTCATCTACGTCCGGCCCAACCCCAAGACTGGTGTGCCTGTGGGTCACTGGCCCATCCCAGAGTCTTTTTGGCCCGATCAGAACTCGCCCACCTTGCCACCACGGACCGCCCACCCCGTGGTGCGCTTCTCCTGTGTGGACTGCGAGCCCATGGTGATCGACAAACTGCCCTTCGACAAGTATGAGCTGGAGCCCTCGCCTCTCACACAGTACATCCTGGAGCGGAAGTCCCCGCACATGTGCTGGCAGGTGTTTGTGAGCAGTAGCGGGAAGCACAATGACCTTGGACAGCCATTTGGATACCTGAAAGCCAGCACCACTCTGACCTGTGTGAATCTCTTTGTGATGCCTTACAACTACCCAGTCTTGTTGCCATTATTAGATGACCTGTTTAAAGTGCACAAACTCAAACCAAACTTGAAATGGCGACAGTCTTTCGAGATCTACCTGAAGACAATGCCTCCCTACTTCCTCTTGCCACTGAAGAAAGCACTGAGGATGATGGGAGCTCCCAGTCTCATCTCGGATAACATGGACTGTGGCCTCAGCTACAGTGTCATCTCCTATCTCAAGAAGCTCAGCCAGCAGGCAAAAATAGAGTCTGACCGGCTTATTGTGTCTGTGGGTAAAAAGCCCCCTCAGGAAACTGGCATCAAAGTAAAGAACCACTCCAATGCACTTTCCCTGGCCCACCGCAAGGACTTCaaacagctcctgcagggcATAACTGGAGAGACGCCTCTCCGGCTCACAGACATCAACTTCAAGGAGTTTGCTGGCTTCCAAATCGCACTTTTAAACAAGGACCTGAAGCCCCAGGCCTACAGGAACGCCTATGACATTCCCCGCAGGAACCTGCTGGATCAGCTCACACGCATGCGGTCCAACCTGCTGCGGACGACACAGAAACTGATCCGTGGCCAGGACGAAGACTACTTGCACAGCATCCCAGTGGCACAAATGGGCAACTACCAGGAGTACCTGAAGATGATGCCCTCACCTCTTCGGGAGATTGATCCAGACCAGCCCAAGAGGCTGCACACCTTCGGCAATCCCTTCAAACAGGACAAGAAGGGGATGATGATTGACGAGGCGGACGAGTTTGTGACCGGCCCCCAGAACAAGAAGCGGGCAGCAGGGGGAGACCCCAACTCAGGGGCTGCACTGAAGCGGCGCAGGAGCATGTCCCCCCTGCTGCGACGGCCCCAGACGCCACCCATCATCACCAACCATGTGGTGGGCAAGGGGCCGCCCGGGGGTCAGGGCCACCAGAACATCATCAAACCTATCCCACTGCACAAAGGTGTTGACGGGAACAGCGTGCCAGGGGTGGAGAGCAATGGGGAGAGGAAGCCAGAGGGCTGGCCAGGGTTGGATGGGGTAGAGTCTGTGGCGCTGGGCCCAGAGGAACCAGCGGGTGAGGCCGAGCCCGGGGTGGAGGACGGTGGGCGGCTGGGTGAAGATGACCTGGACGAGAGGCCTGTGCCCTGTGACCACCCAGAAAACTGTGACGATGGGGTCATCCTGAACCAGGAGGGGCTGCTGGAGGTTGGCGGGGAGGAGGCCCAGCCAGGCGTCCACAGGACTGTCAGCATCTTGCCTCTAGACGGCTCTAATGCTGAGCTGCGCACGCGActtctctctcctctcccaatTCCAGATTATGAGATGATATTCCGACTACTTGAAGAAGTGAAGGGTCCTCTGGAGGTACAGAAGTACTTTATCCATCATGCCATCAAAGAAGCAGCCAGGTTTAAGAAGCGGGTGCTGATCCAGCAGCTGGAGACGGCCCTGGAAGAGGTGGAGGAGCGCTACCTGCCCAGCCGGGTCAACAACATCCATGGCAGGTAACGCAGGCGTGGCCGTACCCCCCCGGGAGGGACAGAGCACGGCCGTCAGCGCCACGCACGTGCCGCCAGCGCTCGGCACAGCCAGCGCTCGCTccaggacagagagggagagagagagatggagaaaagaagaagaggaggaggaggagggacagTGTTGTAAACCTTCCCTTTCCATGCCAGTGTTGGCCAGCATCCTGCCACCACACAACAAAGGGCTCAGCATAATCCCTGTCAGGGACTGGAGCTCTCGCACACAGACAGGAGAGCAGAGTAGCAGGGACACGCAGGGCAGCGTGCATACAGAAGGCCTAAATGAGATCTGACCCGATCTCCCTGAGCATCAGACTCATGACAACCCCCCtaacacccacccacccacacacacccacattcaCCCTCCCTCCCCATGACACCTACATGCAACTCCCACTAGCCACGTAGATTAATAAACCCCCCTAACCACCTCATTCCCCTTACCCACACACAGGTCTTCTCCAGGGTTGGGTTGAAAGTGTCATGGTTTGAGGTTACAGGCTGGGGGCAGGGGCAGTGGGGCAGATGGCCTCATTACTGGACACCACAGGACCAACGTTTGATACTCTTGATCGTTGCACATCTGAAAAGATTATCTTTGATAGTAATAAATGAGGAGGGATGGTGTCAGAGAAGGTAAGGGCAAGGAAAGGTGCCATCACGTCATGAAATACATGGCACAGCTTAGATTTCTATTCCAACCCCTGCAATTTCCACCACAGAAAACCAAGCAAGGGGAGTGTAAAATGGTACATAAACAGACAGCGGTTCAATCTCAGGCCCTGACTTCACGTTCCTTTGCCGAGCAAAGACAGCAGCTCCACAGGCAGCTGGGCCTATCAGCAAGGTGTCTGTTAATCAGGAAAAGCTAGTTAAGCTTGGTAGGAGAAGTTAAAGAAAGGGGTACAGTCAGGAAATCCCCACCGCGGCCGCTGCCTACAAACCCTTGTATTCTGCATGAGTTCATTGACACCAATGATGACCCTGTGGCACAAGTGAGGAAACTGATCTACCTCagattctttttgttttaatttaaactcccccccccaccccctgtttcgttattatgtgtttttaatcctCTGTCTCTTTCACGTGTTCAGTAGGAGACTAGGaggctaaaaaaataaataaaccattaaaaaaactaaagcaaaataaatgaataaacatattCTGGATCTGTAAATTACAGGGAGGCTAGGAATTACCCAAGAGCCAAATAGGCCTTGCCTGTTTTCGGTTTGATGTCCTCAGAATCTGAAGCTGAGGAGACTAGTTATGGCCTGTATTGGATTAACTTGTTCTACATCCGAATGGTCTTAACAAGCAATACCTTCAGATGCCATTTTATcactgttggtttgtttttctttcatcccACCTTTTTTACCTTTGTAATTGTTTCTCTGTGGACCTCCTAAGACTTTACTGTTGTAAGCTAATGAGAGTGAGTGAATCGACACGATGTAGGggtaaattgttttttaatgtttttatttttctgtcactgatAAATAAGCTGGAACGCAGGAAGTCAGTGAAGTGTGGCTACATCACATCTGAGTCAAGTTTTTGTTTACTTATCCAAAATAGTTCATATGTTAACTGTTACATGAGAtggattgggggggggggattgttCTGTCTTGAAGGGTAACATTAACCATCAGTTTTAACGACTAGTGTTTCCttgtatatacacaaaaaacaactgctttATTCTTGCTCAGCTGAAAAAGTGAACCTATCACATATAATGTggattttttattctttttattggttttggcatttttaaaacattcaattgTATCTTGATGAAAAATCTGTGgttttgtgtctattttttaaaacatattttaaaaattcagATCATAATAGAGTAGACTCCCTGAAGTTCTCTTTTTTTGGCTGAAGAAGCAAAAATGCCAATTTTAATAATACTTGAGTCCTCAGGCAAAACCTTGATACCTGGGCTAATTGAGCAAAAAGTGGAAGAGATACGGACACTGTAAGGAAGGCTGAAAGAGGCCAGATCTTAAGAGCAAACACTCACAGTCCGTTTGACACGCTGTATGCTGGATGGCATTTTCCAGATCAGTGTGGCTTGACAGAGGTTAGGAAATGTACATAGAGTGGCATTTGAAGCTTTGTGCTGTTAGGCTGATTGACTTCGAGACGTATTGGCTCTGGcgcttttgaaaatgatttttaaCGCATTGCTCATGCTCATGCAACTCCTGACTCATTCACAAGTTCAGTGCAGCTCCGCAGCAGTCTTCCTCTCTGTGCACGGCAGCCAGGGGATTCCCACGTCCGTTCGTATTTCTCTCTGCAGCCTGCCTTAGAACCGCCTTCCATTCCTTAACTAAATCTCAACTGACCTGACGAGGTTGGCATGaactcaagtttttttttttgtttttttttggtggctATGCTTTCCTCAAACGAAAGGGCACCTTCCTCTCGCTGTGGTGGTTTAATGACGTCACCACTCTGCACCTTTTGATGAACTTGACACAGAGCAATGAATAGCGTTTCAGTGATCgaacatttttttcctgttattgtttctttataattCTGCGTGCCATAAACTGGAGGGGAAGGAAAGGACCAAAGGCCAGGCAAACAGACATTGGAAAGTCATTTAATATTGGTGGATAACGTGCAATCCCTAACAGCAGTCATCCCAACCAAGTCTGCCCATGGTAGGTACCTCCATACAGAGGCCCAGACTCCTGAAACGCCCCTGCATGGGCGCAACACACCTGCGCCTGTGCTCTTTCTGTAGATCCTCACAACTGTACTTCCTTAAAAAGTGACTTCAGGGGCAGGGCTGGGGTCAGTTCCAGTTTTTCCATTCTAATTCAGTTTGTAATTCCTTTCTCAGTTCAATTCCAGTAGAGCCTGTAACATCAATGGCAAAAAGTATTCATTGAATTTGGAATGGATCGGAACGGAATCGAAAACTATTTAATCAACCCCAAACTTAATAGGGGTCTGTATCTTGTGCTTTCGTTTTTTTGGCTGACAAGCATCCTGTGATAGAAATTGGTATCgggaaaacatgcaaaataaacaaatgccagTTAGTGACATTTGACGGTGGTCAGGCTGCAATCAAATGGGGAAGTCACATGATCGTGAAGGCAGGCCTAGCCCAAGTGTGAGCTGAGTCACTGAAGATTGTCATAGGAAACTGGGAGGGTACTGTGGTGGAAGTGGagatagaaaataattaaaatgagcatGGAACATGCAAACGGTGAAATTCCCTCATATTGCTGTAGACACGTTTCCCATAACGAGGTATTcagataactttttttaatcatcagGTATGTACTGTATACCATGCACAGACCACTTTCAAAATAGGTTTCTTATTTTTGGGGTGGGtcaaaattatatgaaatctgaaagtgatttaatgttttttaatgataacAAATCAAGCAAATGGATGGTTTAATTCATTGGTCAGATTAGTGTGATGTGTCTGGACAGTAAGACTCGGTTTCAGATGATGGTGGACGCTTAGGTCCATTTTTCAATTttcgtttgtttttctttctccaaatGGCGTCCCTTTTCCATTTTGCTGTGGTGGCTTCCCAGTGTACGCTAATGCAGATCGCAGGGATTCGGATATGGTCCACACCCAGCCCCTCTCCTTTCTCTGTCACCTCAGTGCACAAGTGGAGAAATTGCAAACTTCCATTCTGTGCTATAGCAGCACTAACAAAACGAAaaagattgtttgttttgtttgtttttttaaatgaaagatgtgtattactttttaatgttcatacataagtaaataaataaatagattatttttgGACAGTATTCTTACCagagcataaaaaaataaatatt

Function

symbol description
ints6l Predicted to be involved in snRNA 3'-end processing. Predicted to be located in nucleus. Predicted to be part of integrator complex. Orthologous to several human genes including INTS6L (integrator complex subunit 6 like).
ddx26b ATP-dependent RNA helicase DDX26B

NR:

description
integrator complex subunit 6

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG:

id description
K13143 INTS6, DDX26; integrator complex subunit 6

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021352 True 6700 mRNA 0.49 18 15434040 15462050

Neighbor

gene id symbol gene type direction distance location
AMCG00021351 slc9a6 coding downstream 7390 15407884 ~ 15426650 (-)
AMCG00021353 NA coding downstream 46518 15384103 ~ 15387522 (-)
AMCG00021347 NA coding downstream 129308 15287225 ~ 15304732 (-)
AMCG00021343 NA coding downstream 151151 15280349 ~ 15282889 (-)
AMCG00021344 NA coding downstream 156700 15267040 ~ 15277340 (-)
AMCG00021356 NA coding upstream 18801 15480851 ~ 15489397 (-)
AMCG00021357 hprt1,LOC105912559,LOC107601120 coding upstream 53569 15515619 ~ 15526183 (-)
AMCG00021355 LOC107751967,LOC107560772,LOC107661382,LOC107658087,LOC107601119 coding upstream 66619 15528669 ~ 15535134 (-)
AMCG00021364 NA coding upstream 400844 15862894 ~ 15870530 (-)
AMCG00021376 NA coding upstream 540169 16002219 ~ 16008079 (-)
G85470 NA non-coding downstream 1669 15431042 ~ 15432371 (-)
G85471 NA non-coding downstream 50109 15381352 ~ 15383931 (-)
G85456 NA non-coding downstream 55292 15319098 ~ 15378748 (-)
G85332 zic3,LOC107744514,LOC107601137,LOC107658104,LOC102782288 non-coding downstream 390137 15041063 ~ 15043903 (-)
G85251 NA non-coding downstream 879648 14549592 ~ 14554392 (-)
G85498 NA non-coding upstream 111576 15573626 ~ 15575997 (-)
G85530 NA non-coding upstream 288501 15750551 ~ 15755446 (-)
G85535 NA non-coding upstream 342686 15804736 ~ 15861947 (-)
G85543 NA non-coding upstream 401681 15863731 ~ 15903367 (-)
G85568 NA non-coding upstream 458972 15921022 ~ 15934177 (-)
AMCG00021304 NA other downstream 1362715 14057918 ~ 14071325 (-)
G85115 NA other downstream 1382143 14049974 ~ 14051897 (-)
AMCG00021302 NA other downstream 1482996 13948307 ~ 13951044 (-)
G85037 LOC100846954 other downstream 1516172 13869939 ~ 13917868 (-)
G84952 NA other downstream 1806293 13627335 ~ 13627747 (-)
AMCG00021387 NA other upstream 772267 16234317 ~ 16242655 (-)
AMCG00021412 NA other upstream 1185089 16647139 ~ 16649940 (-)
AMCG00021435 hdx,LOC107572093 other upstream 1824199 17286249 ~ 17303470 (-)
G85953 NA other upstream 1957554 17419604 ~ 17423418 (-)
G86010 NA other upstream 2085112 17547162 ~ 17552766 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_007372 ints6l coding NC_007125.7 CM002898.2 31566517 ~ 31608159 (+)
grasscarp (Ctenopharyngodon idella) CI01000000_10806668_10820794 INTS6L, DDX26B coding CI01000000 null 10804637 ~ 10821078 (+)