G85953


Basic Information

Item Value
gene id G85953
gene name NA
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 17419604 ~ 17423418 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU107289
TTTTTGAATATTAGgaagaataaatgttttttttctttctctcatttattttttaaatcagttaataTACAGAATAACAGTTAATAATATCTTTGAAAAAAGAGCAAtatgttccttttttttaatgtcgCAGTGCAACTTACGTCATACACATCTGTGCAATGTACCATGAGGTGTACACCCCGGAAATAGTACACAGTGGAATTCCATTCGGACAGTTTTCATAGGATTGGGACACatggagagaaaggaagaaCATGACAGTCTGTGcctaaaattaaaatctacctcttaaatatatatatatatatcttcaattcattttattttttaaaagagagaaataacaaaaagtaataataataatgcaaaaacaaacataacaaaatcaatatatatgcACCCTTGTGTAAATACCATCGAAAAGTCAAGAGCCCTGTGTGATCATTGACAATTATGTGTTTAAAGACCAGATTTGTTTAGAAAGGGATACACTTGTCATTGCTGTGGCGGTGGCAGTTTGCAATAAGATGAAACCAGTGTCGTGTACCAGCTCAGCAGTGCTGGAGCATCAGGCTGCGGGGTCTGGCCACAGGCCGGAGGCTGTCTGTGTCACGATGTGTGTTTAGTGGTGTCGGGAGCCCACTCACACTGCACGGCTGCCCTGGCCTACCTGCTCTCTCTGGGTGTAACACATGGGAAAGAGCTAGGTTGGGTTGGGCTGAGTGGCTGCAGGGCAACTTACCAACGCAGTGCATGGTAATGTACTGCTTTGCTTTCTTCctgttattattactgttatttttcgCCGCACCAGACTACGATAACAGAGTGCTCGACCCTGGTACAACTGCTCAACCCTGCCCCCATGAACATCGGCTGCATATCAGCATTGCCACAGTCCAATGCAGTGAGCAACAAGTGCGATGAACACATGCTGTAGCCAATGAGGTACTGACGTGCTTTATATAAGAGTGCATTGGTGAGAGTGGCAGAGAATAAAAGCCCCAGAGAGGCAGACGGGAGAGACAGAGTAAGCCCCCCAACACCATagtccccccccacacacacaaacctggcAGGGGGCTGCAAGAAAGCGAACACAGGGGGAATACAGCCTGGGAACCTCAATAGAGGAGCTACACACCTACACCTACAAGCCTCATGAGATTTTATTCCACCAGATTATTCTTTCACACCATttaatatttctctctctctctctctctctctcactctctgcatatatatattaaacttgttatcaatattattatggCAGAAATGTGTTTACTCCTCTCTCATTTCATGAAGTTTCTCTCTGCAAGGTCCCCGCCCAAAAGATACTTCAGTGCACATGATTCTTGcagattaaaacatttcaaaagacaTATACTCAGGGACTCTTCAACTGAGCCAGGAAACAAGCAGTACAATTAATTATCTCTAGACATTGTCCTGAACAGGAAAAGAGACTGAGGCGATGGAGGCGATGGAGGCGAGTGGCTCCCAGTAAGTCATCATGGGCAAGGAGAGGGGTGGGGTCTGAGTCACATCGTCCCAGATTAACAGCTCTGAATACGAATTCGTCAAAACTCAGGTTTGCTTTGATTTGGCCCCCGAAGCTAAACCGTTCACTGTAGAGACTCCTGTGCAATGACAGGGGGATCCCTGCAGGTTGCTACAAAATGcctgcattctctctctcacacactctcactctctctcacacactctctcaaaaCTGAGTCCTGCTTCTCTTTAGTGTGACTACAGCCAGTCCTGTGGCAGATGATGGTCTTCGATTACTTTGGGGTGGCTGGTTTCAGATGCACATATTGataacaaagcaaagcaaaaggCAAAATGTTGGATTATCTGTACTATCACACAGTACTATTCCGCACTATTACATTCAGGGTAAGAGCAGGACTGCACCTACTTACACAGTGACCAGCACAGAAGGAAAGACAGGTCTGTATCGAGAAACCCCTCCTTCTATTCCATGGGACAGGGCATTAGGGCTCTCTGGGTCTCTgttacactgcacacacatacacacacatacacaagcattcagacacacagacacactcaaacATGCATAGCACTGAGTGGGAGGTACAACAAAGCACAGCCTCTCCTGTACACCAGCTGACTGGTGCCGGCACCTACTGGAACAGGCCCAAATAGATCAAACAAAACTACAAGAACAGGAAAACACCAATGTGCACAAACAGAACCAGAAGCAGAGTCTGAGTCCAGTCTGCAAGCGGGGGGAAGGAGCCTCCATCTGACTGTGCAGCTCTGGACTGTCCTGTCTGCAGCCGGGGGGGGGAGCCTCCAGCCAACCATGCAGCTCTGGACTCCAGGACCGATCAAGCAAAGCAAAgctgctgtatttttgtttttgactttttttttttattattattattattatctttttgtaaaaaattatttatttttctatatgaTTCTGCAGAGACAGAATCTAAAGATTGCATTCACAAGGGTAGATCACAGTATTAAAACAGCTGTTTATAggcaaataatatatatacctttaaatgtttttattagtttgcGTAGTAGTTCTACAATGGTTTCCCCACTCAATGCATGTCTCAGTTTCATGCAATTTTTATTAGTTCTGCTtcgttcgtttgtttgtttgcttcgtGTACTGCAGAAAACTGTTCAGTAGGAAAGTCAGTCATTTGTATCACTAAAATCCTGGTTTTAGAATAATTATCTCATTAAGACTAATTATCTTAAGAGATTTCATCCCCTGGATTTTACCATTGGGCAATCAttcatccatatatatatatgcgtgtgtgtatgtatttaaaaaccaataataatgatgataatgataattatattaataatagaagTAGTAGTACTCGtaatagtataaatatatatataaaaatctgtCTTTTTAGGTAATGAGAGCTGTTGATCTGCAAGGTTTACTGCAGTGGtacagtgatgtggtagaattGACCCTTCCTTCCATATTGCTGCTACATTGCTCCCTCTGTCTACAgccaaagaagaagaagtaaaaaataataataaaaaaatatatataacgggaaagaaatcaaacaaattaacaaaaaacagaacaaaaaggaaatgcacataGTGCTCCACAACAGCAGACACCCCAAGCCGCTCCTCTCTCctgcttttctcttttgttcttttgtgaAGACAAAGGAAGGAGAGCACTTTCTCTCCCAGCATGCAGGAGGCATCCGGTGGCACTATGCTTTTATCCAACGTATTTACAGGATcgcttattttttctgtatgttctgaatacattatttacaaatattacagtGGTTGGTTGGTCAGTTTGGCatgggggaggtggggttggGGGTCCTGGAGGAGCAGGACGGAAGGGAGGGAGTGTCAggttgtgttttcagtgtttttgtgaggggaggaggaggagagaggcagaggtgGAGACGGGGGGGTGGCGGGTCAAATGTGTTCTGCCAATGGAGGGGCTGCAGCCCCCACAGTGCCCCCCTGTGGGCCTCAGACGTGCGTCTCGATgaaggagtgtgtgtgcgtcATGAGCGGCGTCAGCGGCGACAGTTCAGACGGCCCCTCGTGGGTGTCCCGCAGCCCCGAGCTAAACTCGCAGATGTCCATGAACAGCTCGTGATGCCTCTGCTTCCACTCGCGGAATTTCTTGGAGGTCAGAGCGGGGTCGTCCAGCACCTGGTTGATGATGGCCAGGTCACCCTCTTTCGC

Function

GO:

id name namespace
GO:0008543 fibroblast growth factor receptor signaling pathway biological_process
GO:0006814 sodium ion transport biological_process
GO:0044344 cellular response to fibroblast growth factor stimulus biological_process
GO:0071774 response to fibroblast growth factor biological_process
GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU107289 True 3783 TUCP 0.44 2 17419604 17423418

Neighbor

gene id symbol gene type direction distance location
AMCG00021432 rps6ka6,rps6kal,LOC103359561,LOC102207076 coding downstream 138803 17249632 ~ 17280801 (-)
AMCG00021425 NA coding downstream 377097 17035957 ~ 17042507 (-)
AMCG00021427 NA coding downstream 396465 17022545 ~ 17023139 (-)
AMCG00021426 NA coding downstream 398329 17003369 ~ 17021275 (-)
AMCG00021428 NA coding downstream 424048 16994546 ~ 16995556 (-)
AMCG00021437 NA coding upstream 33442 17456860 ~ 17475633 (-)
AMCG00021446 NA coding upstream 89144 17512562 ~ 17517667 (-)
AMCG00021445 NA coding upstream 94963 17518381 ~ 17539713 (-)
AMCG00021447 NA coding upstream 165120 17588538 ~ 17589461 (-)
AMCG00021448 prps1b,prps1,LOC103391169,LOC108413289,LOC104923196,LOC107684920 coding upstream 192887 17616305 ~ 17632305 (-)
G85952 NA non-coding downstream 1056 17417997 ~ 17418548 (-)
G85938 NA non-coding downstream 128743 17248967 ~ 17290861 (-)
G85909 NA non-coding downstream 290939 17128464 ~ 17128665 (-)
G85905 NA non-coding downstream 330769 17087933 ~ 17088835 (-)
G85904 NA non-coding downstream 331886 17086722 ~ 17087718 (-)
G85977 NA non-coding upstream 36309 17459727 ~ 17459941 (-)
G85985 NA non-coding upstream 53286 17476704 ~ 17476904 (-)
G86000 NA non-coding upstream 89779 17513197 ~ 17513620 (-)
G86012 NA non-coding upstream 103335 17526753 ~ 17527139 (-)
G86013 NA non-coding upstream 109190 17532608 ~ 17532829 (-)
AMCG00021435 hdx,LOC107572093 other downstream 116134 17286249 ~ 17303470 (-)
AMCG00021412 NA other downstream 769664 16647139 ~ 16649940 (-)
AMCG00021387 NA other downstream 1176949 16234317 ~ 16242655 (-)
AMCG00021304 NA other downstream 3348279 14057918 ~ 14071325 (-)
G85115 NA other downstream 3367707 14049974 ~ 14051897 (-)
G86010 NA other upstream 123744 17547162 ~ 17552766 (-)
AMCG00021444 NA other upstream 157824 17581242 ~ 17585441 (-)
G86049 NA other upstream 502681 17926099 ~ 17926708 (-)
AMCG00021460 rhog,LOC101076287,LOC107396352,LOC104923191,LOC105923887 other upstream 817819 18241237 ~ 18248894 (-)
G86241 NA other upstream 1398115 18821533 ~ 18909908 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G102741 NA non-coding NC_053121.1 CM020918.1 2219576 ~ 2221446 (-)
mexican tetra (Astyanax mexicanus) G102389 NA non-coding NC_035908.1 CM008311.1 10439186 ~ 10444977 (+)