AMCG00021426


Basic Information

Item Value
gene id AMCG00021426
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 17003369 ~ 17021275 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021426
atgttcgGTTTTAGCAGTAGCCAGGTGTCCCTCAATCAGCACATCCCAGCAGACTACCTGTTGCGCATCTGCCAGCGTGTGGGCCCCCTCCTAGACAAGGAGGTGACCCCCAGCGTGCCAGGAGTGCGCACCCTCCTGGGGGTTGGCCGGCAGTCACTGCTGCGCACCACCAAAGGCTGTTCTCACACAGTATGGAGCGGCTCGGCCTTTGCAGCTCTGCACCGTGGGAGGCCGCCAGAACCCCCCCTGATCTATGGGAAGCCCCCCAGTGTTGTCCACATCATGGGGGCGAGGCAGTGCACAGGCTCCGCCCGCTTCGGCCATGCCCTCCCCACCTCCACCTATCAGCACATGAAGATGCACCGCCGCATCCTGGGCCACCTGTCGTCCGTGTACTGTGTGGCCTTCGACCGCACGGGACGCCGCATCCTCACGGGTTCTGATGACTGCCTGGTGAAGATCTGGGCGACAGATGACGGGCGGCTGCTGTCGACGCTGCGGGGGCACTCGGCAGAGATCTCCGACATGGCCGTGAACTTCGAGAACAACCTGATCGCCTCCGCCAGCTGCGACAAGGTGATCCGTGTGTGGTGCCTGAGGACCTGTGCCCCCATCACTGTGCTGCAGGGCCACGCTGCTTCCATCACTTCCATACAGTTCTCTCCGTCAGCGAAAGGGACCGTTCGATACCTCATATCCACAGGAGCGGATGGCACGGTGTGCTTCTGGCAGTGGCATTCTCTGTCCCTGAAATTCAACGAACGGCCCTTCCGGTTCACGGAGCGCTCCCGCCCAGGGGTGCAGATATCCTGCTCTTCCTTCAGCTGTGGTGGGATGTTCTTGGCCACGGGCAGCACAGATCATGTCATCAGGGTGTACTACCTGGGCTCAGAGTCGCCCATAAAGCTAGCACAGCTGGAATCTCATACGGATAAAGTCGTCGCAGTACAGTTCTGTAACAACAACGACGGGCTGCGTTTTGTAAGCGGCAGTCGGGACGGCACGGCTAGAGTGTGGCACTACCAGCAGCAAGAGTGGAAGAGCATCGTGCTGGACATGAATAGCAAACTCCCAGGGAGCAGTGTCGTTCCCGTGGAGGACAAGGCACCTAAGCTGAACGTCACCATGGTGGCCTGGGACCGGGGGGACAGCTCTGTCATCACCGCTGTCAACAACTACCTGCTCAAAGTTTGGAGCTCCAGCAGCGGCCAGCTGCTGCACGTGCTCTCGGGCCACGATGACGAGGTGTTTGTGCTGGAGGCCCACCCTTTCGACACGCGCATCATGCTGTCGGCTGGACACGATGGCAACATCTACATCTGGGACCTCTCCAAGGGCACCAAGATTCGCAACTACTTCAACATGATCGAGGGCCAGGGCCATGGCGCAGTGTTTGACTGTAAGTTCTCTCCGGACGGCCAACACTTCGCCTGCACCGACTCCCACGGGCACCTGCTCATATTCGGCTTTGGCTGCAGCCGGCCCTACGAGAAGATTCCCGATCAGATGTTTTTCCATACGGATTTCCGCCCACTCATCCGAGATGCCAACAACTTCGTGCTAGACGAGCAGACACAACAGGCGCCCCACCTCATGCCCCCCCCCTTCTTGGTCGACGTCGATGGCAACCCCCATCCCCCCAGCTTTCAGCGCCTGGTGCCTGGCAGGGAGAACTACAAGGAGGAGCAGCTTGTCCCACAGCTAGGATACCTGGCCAACGGTGACGGGGAGGTGGTGGAGCAGGTGATTGGTCAGCAGACTGTGGGAGAGGAGCCAGAGGAGAGCCCCCTGGATGGGCTGATCAGACAGCTACAGCAAGAGCAGGACCGGGAGGAGCAACCACATGACCATCCAGATGGGCGAGGCGTGGTGGAGGACCTGGGCCCATTCCCGGTGGTTGGGTTGCGGCGGAGCGGGCAGGTGGAGGGCGTGCGGCAGATGCACAACAACGCGCCGCGTAGCCAGATGGCCACTGAGCGAGATCTGATGGCCTGGAGCCGCCGTGTCGTGGTCAACGAGCTTCACCCAGGGGTCAGCAGGGTGATGGATGAGTGCAGGCAGGCGAAAGGAGAGGCAGAGTGTGCACTGTACAACgcagagaggaggaaaaagcCCCCCCACAGCATGCTGAGGAGCGAGCAGCAGGACTTGGCCCCTCGCTCTCTGCGCCGGACGCGGAGGAAGCAGCAGCACGCCTATCAGACCCGCTCCGCCATCGAGCGCCACCCCCAGGACCCCTCACGCCGTGCCCGGGGTAGTGCCTCTGACAGCGAGGACGAGGTGGAAGACGAGGTGGAGGCCAGTGGTCCTTCATCTGAGGAGGGAGAGCCAGATTGGCAGAGTGACAGCAGCTCCAGTGACTCTTCCAGCGAGTACTCTGACTGGACGGCGGATGCAGGGATCAACCTCCAGCCCCCGAAGAGGCCGACTCGCCGGCCAGCGCGCCATGTGGCCGGTAGCAGCTCctcagaggaagaggaagaggaagaggaaggaggcGGCAGCGGCAccgaggagaggaggagaaggaggcagcCCAAGAAACGGAAGAAACCCAAACAGACCAAACAGAAGAAACCCAACTCCTCGCTGGCGATGGCGGGGGAAGCAGCGGAGGAGTGGCTGCCCCCTTCTTGGATCATGGACACCATCCCGCGTCGCTCACCCTTCGTGCCACAAATGGGAGATGAGCTCATCTATTTCCGGCAGGGCCACGAGGCATACGTCAGGGCCGTGCGCAGGGCCAAGTCCTACGTCATCAACCCCCAGAAACAGCCCTGGAACAAACTGGACCTGAGGGACCAGGAGTCAGTGAAGGTGGTGGGGATCAAGTACGAGGTGGGGCCACCCACGCTTTGCTGCCTGAAGCTGGCCTTCCTAGACCCCATCTCCGGGAAGATGACTGGCGAGTCCTTCTCTCTCAAGTATCACGACATGCCCGATGTCATCGACTTCCTGGTTCTGCAGCAGATTTATAATGAAGCCAAGGAACGCAACTGGCAGCCTGAGTATCCTGACAGCCTGTTCCAGTGCTACGCTGTGCGGTGGGacaatggggagagagaaaaaatgagtCCTTGGGATATGGAGCCCATTCCTGATGAAGtgTCGTTCCCAGAGGAGGTGGGCGACGGGGTGCCAGTGACTGAGGAGGAGTTGCAGGCACTGCTGTACACACCCCAGCAGGGGGAGTGGGGGGCACGCTCGCGGGATGAGGAGTGCGACAGGGTCCTCATGGCCATCGATGATCTGCTCTCTCTGGatatTGTCAAGGCCTTCTCCTCCCCAGTCGACCTGCGAGATTACcccttgtactgcactgtggtgGCCTACCCCACTGACCTTAGCACAATCCACAAGAGGCTGGAGGCTCGCTTCTACAGGCGGATCTCCGCGCTGATGTGGGAGGTGCGCTACATCGAGCACAACGCGCGCACCTTCAATGAGCCCGAGAGCCCCATTGTCTCCGCCGCCAAGACCGTCAGCGACGTGCTGCTGCGGTTCATTGGGGACCAGAGCTGCACTGACATCCTGGAGCTGTACAACAAGATGAAGAGTGAGGAAATGAGCAGCGCcgctgaggaggaggaggacgaggaGGCAGAGGTGGACGTGGACTCGGACACTCCTGGGACCTCCACTGGACATCGGCGAGCACAGCCCCCAGTGAAGCGACGGGGGGTGCCCTTGGACGTTGGGGCATGGCGGCGGCATTGCCGGGATCTGCTGACATGCATGCTGGAGTCCGAGGACTCGGAGCCATTCCGACAGCCTGTTGACCTCTTTGCCTATCCGGATTACCGTGACATCATCGACACCCCGATGGACCTGGGCACAGTGTCGGAGACGCTGCATGCTGGGAATTATGAGAACCCCATAGAGTTTTCCAAGGACGTCCGGCTCATCTTCAGCAACTCCAAAGCCTACACCCCCAACAAGAAATCCCGGATCTACAGCATGACTCTCAGCCTGTCGGCCTTCTTCGAGACCCAGATCCTGTCCATCATCTCAGACTATAAGTCCGCGGTGCAGAACCAGCGCCGGAGCCAGCAGAGGCTGAGCTACCGCAAGAGGCTGCGCAGTACCAGCAGCTCCCCCTCCACCAGCCGCACCTCCAGCCCGAAAGGGAAGAACAAGCAAGGCAAGACTCAGTCCAAAACTACCCAGAATACCTCACTGTCTCTGACCAGGACCAGCTCGCGGAGGTCATCTCAAGCCTCGGAGCCCACAGAGGCGAGCGGCTCGGTGGTGGATGACGACGCGGACAGCCAGCCCTCCTCCTCCAACTCCATAGCAGAGGAGAGGCAGAGGGCCCCCGGCGCAGACAGGGTGACGCGCAGTCGAGCCACTCCAGTCAAGACGGATGTTCTGATAAACGGGCCACTGACCAATGGAGGCGGACGGTCCCTCAGCGCAGCGGCCAGGCGGCGTCTAGGCCTGGGTCCTGAGGAGGGCGAGGTGTCCAAAGCTGCCCTCCTGCGCCCGCAACGCAAAGCCCGGGGGAAGACTGCCAAGAACACCAACAGAAAACGGCGGCGGGATGAAGGGGCGGCAGCAGCGGTACAGGCAGCGGCGGCAGGACGCGGCGGCCGGGCCAAACGCTCACGAAGGCAGGACttggagcagcagcaggaagaggaagaggaagaggaggatgaggaagaggGAGACGAAGAGGAAGAcgaagaggaagaggagcaggaaCAGGAGGAGTGCCAGCAGGTACAAGGCCGACCGCAGGCAGATGGTGGCAAGCGTCCCGCGCAGCACAAAGCATCGCGCATCAACACCCGTAACCAGGGTCGCCGGACAGTGCTGTACAATGACGACTCGGAGGACGACACCCTGGCGCCCGCGGGGGACCCCCTGAATCTGGGCATGTCTCGCTCCGGCAGGGTACGCAGGATGACGGAGAAGGCTCGGGTCAGCCATCTGATGGGGTGGAACCACtga

Function

GO: NA

KEGG:

id description
K11798 BRWD1_3; bromodomain and WD repeat domain containing protein 1/3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021426 True 4953 mRNA 0.61 38 17003369 17021275

Neighbor

gene id symbol gene type direction distance location
AMCG00021428 NA coding downstream 7813 16994546 ~ 16995556 (-)
AMCG00021422 chmp1b,LOC101476317 coding downstream 94386 16899376 ~ 16908983 (-)
AMCG00021420 itm2a coding downstream 153112 16842763 ~ 16850257 (-)
AMCG00021414 NA coding downstream 270432 16720789 ~ 16732937 (-)
AMCG00021413 NA coding downstream 293929 16708394 ~ 16709440 (-)
AMCG00021427 NA coding upstream 1270 17022545 ~ 17023139 (-)
AMCG00021425 NA coding upstream 14682 17035957 ~ 17042507 (-)
AMCG00021432 rps6ka6,rps6kal,LOC103359561,LOC102207076 coding upstream 228357 17249632 ~ 17280801 (-)
AMCG00021437 NA coding upstream 435585 17456860 ~ 17475633 (-)
AMCG00021446 NA coding upstream 491287 17512562 ~ 17517667 (-)
G85837 NA non-coding downstream 180290 16822816 ~ 16823079 (-)
G85824 NA non-coding downstream 194049 16807806 ~ 16809320 (-)
G85802 NA non-coding downstream 245758 16691567 ~ 16757611 (-)
G85771 NA non-coding downstream 437348 16565717 ~ 16566021 (-)
G85716 NA non-coding downstream 531610 16471552 ~ 16471759 (-)
G85889 NA non-coding upstream 48569 17069844 ~ 17071130 (-)
G85904 NA non-coding upstream 65447 17086722 ~ 17087718 (-)
G85905 NA non-coding upstream 66658 17087933 ~ 17088835 (-)
G85909 NA non-coding upstream 107189 17128464 ~ 17128665 (-)
G85938 NA non-coding upstream 227692 17248967 ~ 17290861 (-)
AMCG00021412 NA other downstream 353429 16647139 ~ 16649940 (-)
AMCG00021387 NA other downstream 760714 16234317 ~ 16242655 (-)
AMCG00021304 NA other downstream 2932044 14057918 ~ 14071325 (-)
G85115 NA other downstream 2951472 14049974 ~ 14051897 (-)
AMCG00021302 NA other downstream 3052325 13948307 ~ 13951044 (-)
AMCG00021435 hdx,LOC107572093 other upstream 264974 17286249 ~ 17303470 (-)
G85953 NA other upstream 398329 17419604 ~ 17423418 (-)
G86010 NA other upstream 525887 17547162 ~ 17552766 (-)
AMCG00021444 NA other upstream 559967 17581242 ~ 17585441 (-)
G86049 NA other upstream 904824 17926099 ~ 17926708 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G22745 NA non-coding CI01000003 null 317115 ~ 317317 (-)
rainbow trout (Oncorhynchus mykiss) G22116 NA non-coding NC_048565.1 CM023219.2 22621125 ~ 22621325 (-)
mexican tetra (Astyanax mexicanus) G18950 brwd3,LOC107672566 non-coding NC_035899.1 CM008302.1 14490591 ~ 14496452 (-)