G85824


Basic Information

Item Value
gene id G85824
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 16807806 ~ 16809320 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU107125
tttctttcagatttttttattttatttttcttattgcaaACATTTAGTGTGTTAGGCAGCACATTTCTATATCAGCTTACATCAGCGACTTCAGTTACTGTGTCCAAGGGACAACAGAAGGGACAACAGAAAGCAGCTTATGAAAAGAGAACAATTCAGCCTGGACATAGTGTGGcccagagggagagagacaaaatatgcaaaagtacatgaaaaaacaaaaacattgaaatacatgaaaataaagttcaTGCTGATAGTTTAATTTCCAATTCAACTTCCTAAAATTTCTGGAAATGTAAGTAATGGCTTTAGATTCAGACATGTTTGGTGGTTTTGCTTATTGGGTAAAACCAACATTTTGATTGCAATCCTAAAGCAAATTCCACACATAAACAGTCAACAGGAATGCGTCACCCAACAATGAAACCAAATCTAAATACAGCAGTCATTGTTTATTCCCCATATTCTGAGGAACAGTGgctcagatttttttaaatagaaacaaatgaaacaaaaaaaagtagcTTGAAGTTCCACTCTGAACACAAATGTGTGAAGAGAAGTAGATGTTGAACTACAGGTCatagtgtgactgtgtgtgcgtctgcgATTGCAGTGGAAAGTATATGTCTCAGCGACACTGTGTGTGGGCATGTCGTGCATCTGCAGGATTTGTCCTTGCTTGGACTGtacttttgttcttgttttgctttttgctgaGGATCGAACAGCAGACTGAACAGAATCGCAAGTCGTTTGGGCTGAGCCAAGGGGATCAGTAGGGATACTCTGCAGTGTCAACCACACGGCCCCACAAGACACAGCTCAGCTTGTTCCATGTGAACTCTGACTTCACCTACCCTAACATGACTATTAATCGtaatattacataattaaatattaatatttcatagtcttaataaataaataaatacatctaagaGGTTCTGGATTGGGCCTCTTCGGTACACTCATGGCCCAACACAGTCTTTCAGGGCCAGTTAAATCTCACTATAGGATTTACCTACACAGTTGTGGAAAATTTGAGCATGTTGCAGCCAGCTGCATGTAAGATGATATATTACCTTTCCAATTAGCAGGGTAATAAAAGCAGACATCGTATTGTCAACATTTATGTTCTTTTTATGATCTCTAATGTTTAAAttagtataaaaatataattgtgtcatAAACCAAAGGACTTGAATAACACTTTTGTTCTTCTGCTTAAGGGTTTCTTAAGTAGGTCAAGCAAAGAGTATTTTGAAAGATTTTTCTAAGAAATCATGTGACACTACACTTTGACACTATTAAACTAAGGTGTACAGCTTCCCTGCATATGAGttaaaatttatatttaaattgatttggttGGTTGGGGGGTTTTGATCAAAAGTCAAAGAGTGATTAATTTCGGAGTGTGGCTATCTCCCTAACAGAAAGCCTAAGAACTAACAATATCATGTGCTTCCTTGTGTGATAACTGCAGAGTGAAGTCTTAGGCTCACATCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU107125 True 1515 lncRNA 0.37 1 16807806 16809320

Neighbor

gene id symbol gene type direction distance location
AMCG00021414 NA coding downstream 74869 16720789 ~ 16732937 (-)
AMCG00021413 NA coding downstream 98366 16708394 ~ 16709440 (-)
AMCG00021409 LOC108443111 coding downstream 133630 16656644 ~ 16674176 (-)
AMCG00021410 LOC104920593,LOC104965768,LOC103366846 coding downstream 217197 16581562 ~ 16590609 (-)
AMCG00021411 vamp7 coding downstream 235312 16567139 ~ 16572494 (-)
AMCG00021420 itm2a coding upstream 33443 16842763 ~ 16850257 (-)
AMCG00021422 chmp1b,LOC101476317 coding upstream 90056 16899376 ~ 16908983 (-)
AMCG00021428 NA coding upstream 185226 16994546 ~ 16995556 (-)
AMCG00021426 NA coding upstream 194049 17003369 ~ 17021275 (-)
AMCG00021427 NA coding upstream 213225 17022545 ~ 17023139 (-)
G85802 NA non-coding downstream 50195 16691567 ~ 16757611 (-)
G85771 NA non-coding downstream 241785 16565717 ~ 16566021 (-)
G85716 NA non-coding downstream 336047 16471552 ~ 16471759 (-)
G85658 pof1b non-coding downstream 541008 16179162 ~ 16266798 (-)
G85592 NA non-coding downstream 796104 16011231 ~ 16011702 (-)
G85837 NA non-coding upstream 13496 16822816 ~ 16823079 (-)
G85889 NA non-coding upstream 260524 17069844 ~ 17071130 (-)
G85904 NA non-coding upstream 277402 17086722 ~ 17087718 (-)
G85905 NA non-coding upstream 278613 17087933 ~ 17088835 (-)
G85909 NA non-coding upstream 319144 17128464 ~ 17128665 (-)
AMCG00021412 NA other downstream 157866 16647139 ~ 16649940 (-)
AMCG00021387 NA other downstream 565151 16234317 ~ 16242655 (-)
AMCG00021304 NA other downstream 2736481 14057918 ~ 14071325 (-)
G85115 NA other downstream 2755909 14049974 ~ 14051897 (-)
AMCG00021302 NA other downstream 2856762 13948307 ~ 13951044 (-)
AMCG00021435 hdx,LOC107572093 other upstream 476929 17286249 ~ 17303470 (-)
G85953 NA other upstream 610284 17419604 ~ 17423418 (-)
G86010 NA other upstream 737842 17547162 ~ 17552766 (-)
AMCG00021444 NA other upstream 771922 17581242 ~ 17585441 (-)
G86049 NA other upstream 1116779 17926099 ~ 17926708 (-)

Expression


Co-expression Network