AMCG00021432 (rps6ka6,rps6kal,LOC103359561,LOC102207076)


Basic Information

Item Value
gene id AMCG00021432
gene name rps6ka6,rps6kal,LOC103359561,LOC102207076
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 17249632 ~ 17280801 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021432
CGATGACGTCAGATCTACGTCAACTTGTAATGTGTTTCCACGCTCCTCAGGTGTAGAGCGGCGGCCATATTCGGAGATCTATAGCGGAGCGCCTGGGCTTTTCTCGGTCCGAGTACAGGACCCCAGTCCGGCGGACAGACCTGCACAGCTGTCACAGGACCATCGCTGGCCGTTTGTTATTCGGAGGCTCAGGCCAGCGACAACAACCTCCCCAGCCGCAAACGAGGGGCCTTCACCCGCACGGGCAGCGGAAAGCAATGCTCTCTGATGCGGCTCTAGTGTGACTACGATGCCTTTTGCCCAGTCGCAAGATCCCTGGCACAAAATGGAGGTGCACAGTGTTAGTAGTGAGGTCAATGGCCATCAGATCATGGATGAACCGATGGAGGAAGGAGAGTCTTTCTCTTGCGATGAAGGCACCATTAAGGAGATCCCTATCACTCACCATGTGAAGGAGGGCTGTGAGAAGGCAGACCCCTCGCAGTTTGAGCTGCTCAAGGTCTTGGGTCAGGGCTCGTTTGGGAAGGTCTTTCTTGTTAGAAAGATAGTGGGGCCAGATGCGGGGCAGCTCTATGCAATGAAAGTACTGAAGAAAGCATCTTTGAAAGtgAGGGATCGAGTTCGCACAAAAATGGAACGAGATATATTGGTGGAAGTAAATCATCCATTCATTGTCAAATTGCACTATGccTTTCAGACAGAAGGGAAGCTGTACTTGATATTGGATTTCCTCAGGGGTGGAGATGTATTTACTCGCTTATCCAAAGAGGTTATGTTTACAGAGGAGGATGTGAAATTCTACCTTGCAGAGCTGGCCCTTGCATTGGATCACCTTCACAGCCTAGGCATTGTTTACAGAGACCTGAAGCCAGAAAACATTTTGCTTGATGAAGCAGGACATATCAAGTTAACAGACTTCGGGCTCAGTAAAGAGTCTGTGGATCAGGATAAGAAGGCATACTCCTTCTGTGGCACTGTGGAGTACATGGCCCCCGAGGTGGTGAACCGGCGGGGACACACCCAGAGTGCCGATTGGTGGTCGCTAGGTGTTCTAATGtTTGAAATGCTCACTGGTACGTTGCCCTTCCAAGGCAAAGACCGAAACGAGACCATGAACATGATTCTCAAAGCAAAGTTAGGCATGCCACAGTTCCTCACCCTTGAAGCCCAAAGTCTTTTAAGGATGTTGTTCAAACGCAATCCTGCAAACCGCTTGGGGGCTGGCTCTGATGGGGTGGAAGAAATCAAGAGGCACGCTTTCTTTTCCACAATAGACTGGAACAAACTGTACCGGAGGGAGATTCAGCCTCCTTTCAAGCCTGCTGCAGGGAAGCCAGATGACACATTCTGCTTTGACCCAGAGTTCACTGCCAAAACGCCGAAAGacTCCCCAGGCGTGCCCCCCAGCGCCAACGCACACCAGCTCTTCAAGGGCTTCAGCTTTGTGGCCCCTGCCTCActggaggagagcagaaatGCTCCTCTCGTCAACATCCTCCCCATCGTTCAGCAGCTGCATGGTGGGGCGGCGCAGTTCTCAGAAGCGTACGATTTGAAGGAGGACATTGGTGTCGGCTCCTACTCCATCTGCAAGCGCTGCATCCACAGGGTCACCAGCATGGAGTTTGCTGTCAAGATAATTGACAAGAGTAAAAGAGATCCTTCAGAAGAGATTGAGATTCTGATGCGATATGGACAGCACCCAAATATCATCACTATGAAAGATTTGATGAAGGGTGGGGAGCTGCTGGACAAGATCCTGCAACAGAAGTATTTCTCGGAGCGGGAGGCTAGCGCTGTGCTCTACACTATCACCAAGACTGTGGATTACCTGCACTGCCAAGGGGTTGTCCACCGGGATCTGAAGCCCAGCAACATCCTGTACATGGATGACTCTGGCAACCCTGACTCCATCCGCATCTGCGATTTCGGTTTTGCCAAACAGCTGCGAGGGGAGAACGGGTTGCTGCTCACACCCTGTTACACCGCCAACTTTGTCGCCCCTGagGTGCTAATGCGACAGGGCTATGATGCCGCTTGTGACATCTGGAGCCTGGGTGTCCTCCTGTACACCATGCTGGCTGGATACACGCCCTTCGCCAACGGCCCCAACGACACCCCAGAGGAGATCCTGCTCCGCATCGGCAGTGGGAAGTTCTCCCTGAGCGGCGGGAACTGGGACACTGTGTCCGATACATCCAAGGACTTGTTGTCCCATATGCTTCATGTAGATCCACACCAGCGATACACTGCAGAGCAGGTGCTCAAGCACTCCTGGATCGCCTGCCGGGACCAACTGCCCCACTTCCAGCTCACACGGCACGACGCCCCACACCTAGTCAAGGGAGCAATGGCTGCTACGTATTCCGCACTGAACCACAAGACATGCCAGCCAGTGCTTGAACCCGTGGCCGCCTCCAGCCTGGCACAGCGACGCAGCATGAAGAAGCTCACATCAACGGACTTGTAGTAAAAACCCTTTTTAGTTTTGTCTCCCCCTCctctatttgtttttggttaaaggattgcttttatttattatgattatgattccCTGTCCCACCCCATATCCCTAATTTGTTTTCCCATCTTTCATTtaccctgccccctccccccaaacacTTTAGCTTACCTCAGTGGCCCATCCCAGCCTCTAGTGTCCTGATCTCGGAgactgggagagggagagtggagtGGACAGGGAGCACCATGTGTTACAGCAAACTTATTTTTCCAATCAGGGAGGAGGGATATCAAATAGAATCATTAGtttaacacattaaatatatacaaacatgtaTATTGGTACTGTTGGGGAAAAacgtatttttttcttcctttttttttttttttttttaaccgtcCTGTTTCCATGTTGAGGTTAGCACCAGCGCACACTGTCCATTCACTGTGATTGGCCATGTCAGAGCTCACTGTGTACATCAGCACAGAGGTCAGTACTGCACAGCGCTGCATGTCATTCAGGCCTTCCGGAGCGCGCTGTGTTTGCAAGGAGTATGGGGTGAGTGAGGTGGGGAGGGGTACAGTGAAGGGGCATTATGTATGCCCTACTCTGctgtctctctccacctctcgtTACTGCATTACCAATCCTGACATCAGTGACTTTCCCAGACATGCTGGCAAGAATCTTGTTAGAAGCAAGCTACTTTTCGtgagaaaaatgaataataataaactgattacataaataattaaaaacaattcctAGGGCATGTGGGTGAACTGAAGATATGAGATCTGAGCTGTGTAATACAGATGCTTCTCTGCAGGCCACAGCTGCAAGCaatggggggg

Function

symbol description
rps6kal Predicted to enable ribosomal protein S6 kinase activity. Predicted to be involved in DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator and peptidyl-serine phosphorylation. Predicted to act upstream of or within intracellular signal transduction and protein phosphorylation. Predicted to be active in cytoplasm and nucleoplasm. Orthologous to human RPS6KA6 (ribosomal protein S6 kinase A6).
rps6ka6 Predicted to enable ribosomal protein S6 kinase activity. Involved in DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator. Located in fibrillar center; mitochondrion; and nucleoplasm.

NR:

description
PREDICTED: ribosomal protein S6 kinase alpha-6

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021432 True 3318 mRNA 0.51 22 17249632 17280801

Neighbor

gene id symbol gene type direction distance location
AMCG00021425 NA coding downstream 207125 17035957 ~ 17042507 (-)
AMCG00021427 NA coding downstream 226493 17022545 ~ 17023139 (-)
AMCG00021426 NA coding downstream 228357 17003369 ~ 17021275 (-)
AMCG00021428 NA coding downstream 254076 16994546 ~ 16995556 (-)
AMCG00021422 chmp1b,LOC101476317 coding downstream 340649 16899376 ~ 16908983 (-)
AMCG00021437 NA coding upstream 176059 17456860 ~ 17475633 (-)
AMCG00021446 NA coding upstream 231761 17512562 ~ 17517667 (-)
AMCG00021445 NA coding upstream 237580 17518381 ~ 17539713 (-)
AMCG00021447 NA coding upstream 307737 17588538 ~ 17589461 (-)
AMCG00021448 prps1b,prps1,LOC103391169,LOC108413289,LOC104923196,LOC107684920 coding upstream 335504 17616305 ~ 17632305 (-)
G85909 NA non-coding downstream 120967 17128464 ~ 17128665 (-)
G85905 NA non-coding downstream 160797 17087933 ~ 17088835 (-)
G85904 NA non-coding downstream 161914 17086722 ~ 17087718 (-)
G85889 NA non-coding downstream 178502 17069844 ~ 17071130 (-)
G85837 NA non-coding downstream 426553 16822816 ~ 16823079 (-)
G85952 NA non-coding upstream 137196 17417997 ~ 17418548 (-)
G85977 NA non-coding upstream 178926 17459727 ~ 17459941 (-)
G85985 NA non-coding upstream 195903 17476704 ~ 17476904 (-)
G86000 NA non-coding upstream 232396 17513197 ~ 17513620 (-)
G86012 NA non-coding upstream 245952 17526753 ~ 17527139 (-)
AMCG00021412 NA other downstream 599692 16647139 ~ 16649940 (-)
AMCG00021387 NA other downstream 1006977 16234317 ~ 16242655 (-)
AMCG00021304 NA other downstream 3178307 14057918 ~ 14071325 (-)
G85115 NA other downstream 3197735 14049974 ~ 14051897 (-)
AMCG00021302 NA other downstream 3298588 13948307 ~ 13951044 (-)
AMCG00021435 hdx,LOC107572093 other upstream 5448 17286249 ~ 17303470 (-)
G85953 NA other upstream 138803 17419604 ~ 17423418 (-)
G86010 NA other upstream 266361 17547162 ~ 17552766 (-)
AMCG00021444 NA other upstream 300441 17581242 ~ 17585441 (-)
G86049 NA other upstream 645298 17926099 ~ 17926708 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000032_02895288_02920625 RPS6KAL, RPS6KA6 coding CI01000032 null 2894433 ~ 2920625 (-)