AMCG00021662


Basic Information

Item Value
gene id AMCG00021662
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 24199536 ~ 24210205 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021662
GATGGCCGAGGCTcctcccagtttcagctttgtAGCTTTTCCCCCGGCCACTGAGGCAGGCCGTGTGGTCTTCGGGAAGAACTCCATTAGGCCCAAAGATGAGGTTCAGGAGTGTACCTACATTGCAATCGATCAGAGTGAGAAGACTAGCTCTGTGGTCTTGAGCAAGCCGGCGTGGCTGTGGGGAGCAGAGATGGGAGCCAATGAGCATGGAGTGTGTATCGCCAACGGGCCCCTAGTGGCCCGAGAGCCTGCTGCTCATACAGAGGCCCTGCTGGGCATGGATCTGGTCAGACTTGGATTGGAAAGAGGATCCACAGCCAAAGAGGTCTTGGACTGCATGACTTCTCTCCTGGAGGAGCACGGTCAAGGAGGAAACTACTACGAAGATGGCAGCCTGTGCCTTTCCTTCCATAGTGCTTTTCTGATTGTAGACAGAGTGGAGGCCTGGGTGCTGGAGACTGTGGGAAAATACTGGGCTGCTGAAAAAGTCACAGAAGGAATCAGGGGTCTCTGCCACCGCTTATCCATATGTACGAAGATTGACGCAGAGCACCCGGAGCTCAGGAGTTACGCCCAGGCCCAGGGCTGGTGGAGCGAAGGGCAGGAGTTCAACTTCTCTGAGGTCTTCTCATCTCCCGAGGAAGAGGACGTGGGGCCCTGTGCCGGGAGGAAATTCCTTGAAAAGCATGAGGGAAGTATAACGGTCCAGACGATGATCGATAACCTGCGAGGCATGAACGGGACAGTGTGTGCCGACTCGGACACACTACTCCCCACGGGCAGCATGGTGTCAGTCCTGCCTCAGAGCAGTGCCTTCTCCGGCATTCACTTCTTCACTGCCACTCCGGACCCAGTGAGGTCCATATTCAAGCCTTTCATCTTTGTTGCTGATGTGAAGCCAGTGCCTAAAGCACAGTCCCCCTGCTTTGAAAAGCAGCCTGGTTCGAAAACCAAAGTTGACTGGAGACATGAGCTGTACAAAGCCCATGAGTGGGCTCTGACAGTCATTGATAGTGCGGAGgAGGAGGGACAGAAGCTGCAAGAGACCATGCTGGATCTGGAGAAGCAAGGCCTGGATGCTATGGAAGACATCTTGAGCAGCTCCGACGCCCTCGATGCCAGCGAAGTAGAAGACCTCTTCTACGACTGCGTTGACACTGAAATCAAATTCTACAAGTGAGCTACAGCTGACAGACACCATTAGCCTTTAACAGTATGTGCGTTCTTTGAGCCTTGTGGGGTGATCTTGTGATTGCTGGAGTCTGAGACACGATGAAGCCAGTCTCACTGGACTGATGTTTCCTTGTTTCCTTTACCAACACAGCCATTCGCTGCAACGATTGCTTATGCATCAAAGTGTGCATTGTTCTGTGTAGATGAAGAAACTTACCAGTCGGTAAGTGTCAGCATGCAGGTTGTTTCTAATATGTTTGAGattgcaacacaaatacaattagaGCCCAACCAAATGACACCACCAGTGATCAGTCTGACTTTAATTTTATCATCCTCACTACAGATACAGacattatacatacacatatcaTTATTTGTTGAAAGTTAATGcattgaaacaaaacactgaacataTCAACATgactaatttattaattaaattaaaacaagaaagttGTAAATGTGTTAGATTTGGCAGTACACAGATTTTGTCAATCTACAGGATAAAGTAAAAGCTGTGCATGTCTTTTTCAGACACTGCAtcataatttgtgtttaaaaaaataagcagaagTGAGAatcacagttttaattaaagcttgattataaaatcacaaattaacAATTCTTTTTTGGTTATGTTGCTGTGTCGTGGTGCCAAATATGTGCCCAATTATTGTTGTGTTCAGATTGTTTCAATATGGCTGTTTATAACTAATGGACACTGGCACAAGACAAGCATCTAATCTGTGCtgagaacaaaaacattacTAACACTGATAATTCGGTTTCTTAGAAATATTAAGGCAGTGATTCAATTAGAAAAACAGGTATCTGCAACCATGTTTCTAATTACTGTAAATAGAGCAACAGTTATTGTGCAGCTTTGTTCCCTCAGATGATAAAGACATCTTTTTTGATTATTACTAGTAATGGCATTTTTCACCAGTGTAATTCCTCATTACTTGTTTAGCAGTATGTTGCTTTCCAGAGTGTCCCAGGGGACCATAAATAATGCGTGTTCAAGTGAATTAGTTTAAACAAAGCTGATGTGATGAGAAATATGTGTTCTGAAACGTCTGTGCCAGAAGAAAAATGCGCACTTTTGATAGATATTACCTCTTTCATTGCACATTGCACTAGGTCATTATTGTCTGCTTTCTCTTGGATGTGTGTCTGAGTCTGTTACGATGATGCTGGTAAACTAGGGCTTTCATAGACTTGCTGTAGAACTCCATCAATCTGATCTGTGTGCAAAcctactgtgtgtttttgtctgtacTCTTGAAAGatgtcaaaatgtttaatgaaaataaagaattgaaAGCCTTAGA
>TU109159
TATAACTTAATGTTCTGTTTACATTGGTACAGTTCTTGGAAGGACATTTACACAGatttacacaaatacatgaTGCCACTGGTAGTGAGgataatgttgctgtttttttttggaaggAGGAGGGACAGAAGCTGCAAGAGACCATGCTGGATCTGGAGAAGCAAGGCCTGGATGCTATGGAAGACATCTTGAGCAGCTCCGACGCCCTCGATGCCAGCGAAGTAGAAGACCTCTTCTACGACTGCGTTGACACTGAAATCAAATTCTACAAGTGAGCTACAGCTGACAGACACCATTAGCCTTTAACAGTATGTGCGTTCTTTGAGCCTTGTGGGGTGATCTTGTGATTGCTGGAGTCTGAGACACGATGAAGCCAGTCTCACTGGACTGATGTTTCCTTGTTTCCTTTACCAACACAGCCATTCGCTGCAACGATTGCTTATGCATCAAAGTGTGCATTGTTCTGTGTAGATGAAGAAACTTACCAGTCGGTAAGTGTCAGCATGCAGGTTGTTTCTAATATGTTTGAGattgcaacacaaatacaattagaGCCCAACCAAATGACACCACCAGTGATCAGTCTGACTTTAATTTTATCATCCTCACTACAGATACAGacattatacatacacatatcaTTATTTGTTGAAAGTTAATGcattgaaacaaaacactgaacataTCAACATgactaatttattaattaaattaaaacaagaaagttGTAAATGTGTTAGATTTGGCAGTACACAGATTTTGTCAATCTACAGGATAAAGTAAAAGCTGTGCATGTCTTTTTCAGACACTGCAtcataatttgtgtttaaaaaaataagcagaagTGAGAatcacagttttaattaaagcttgattataaaatcacaaattaacAATTCTTTTTTGGTTATGTTGCTGTGTCGTGGTGCCAAATATGTGCCCAATTATTGTTGTGTTCAGATTGTTTCAATATGGCTGTTTATAACTAATGGACACTGGCACAAGACAAGCATCTAATCTGTGCtgagaacaaaaacattacTAACACTGATAATTCGGTTTCTTAGAAATATTAAGGCAGTGATTCAATTAGAAAAACAGGTATCTGCAACCATGTTTCTAATTACTGTAAATAGAGCAACAGTTATTGTGCAGCTTTGTTCCCTCAGATGATAAAGACATCTTTTTTGATTATTACTAGTAATGGCATTTTTCACCAGTGTAATTCCTCATTACTTGTTTAGCAGTATGTTGCTTTCCAGAGTGTCCCAGGGGACCATAAATAATGCGTGTTCAAGTGAATTAGTTTAAACAAAGCTGATGTGATGAGAAATATGTGTTCTGAAACGTCTGTGCCAGAAGAAAAATGCGCACTTTTGATAGATATTACCTCTTTCATTGCACATTGCACTAGGTCATTATTGTCTGCTTTCTCTTGGATGTGTGTCTGAGTCTGTTACGATGATGCTGGTAAACTAGGGCTTTCATAGACTTGCTGTAGAACTCCATCAATCTGATCTGTGTGCAAAcctactgtgtgtttttgtctgtacTCTTGAAAGatgtcaaaatgtttaatgaaaataaagaattgaaAGCCTTAGAGTGTAATCTGTG

Function

GO: NA

KEGG:

id description
K14358 SCRN; secernin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021662 True 2513 mRNA 0.45 8 24199548 24210205
TU109159 False 1617 lncRNA 0.37 2 24199536 24201701

Neighbor

gene id symbol gene type direction distance location
AMCG00021652 LOC107743225,LOC107550833,LOC107743199 coding downstream 125564 24056803 ~ 24073972 (-)
AMCG00021653 NA coding downstream 144664 24052590 ~ 24054872 (-)
AMCG00021650 NA coding downstream 256921 23934484 ~ 23942615 (-)
AMCG00021649 jazf1,LOC108242006,LOC108441515,LOC107550831,LOC572950 coding downstream 306890 23885292 ~ 23892646 (-)
AMCG00021646 hibadh,LOC101062690,LOC106570522,LOC108441516 coding downstream 351045 23844671 ~ 23848491 (-)
AMCG00021660 fkbp14,LOC106943903 coding upstream 5663 24215868 ~ 24220678 (-)
AMCG00021661 NA coding upstream 27070 24237275 ~ 24256623 (-)
AMCG00021663 NA coding upstream 51696 24261901 ~ 24277596 (-)
AMCG00021666 ankrd28 coding upstream 69387 24279592 ~ 24307071 (-)
AMCG00021667 NA coding upstream 156520 24366725 ~ 24369123 (-)
G87428 LOC103376870 non-coding downstream 66225 24080736 ~ 24133311 (-)
G87427 NA non-coding downstream 122429 24076899 ~ 24077107 (-)
G87287 cbx3,LOC108425284,LOC105023664 non-coding downstream 711324 23482972 ~ 23488212 (-)
G87282 NA non-coding downstream 717636 23433216 ~ 23481900 (-)
G87269 NA non-coding downstream 827344 23371190 ~ 23372192 (-)
G87495 NA non-coding upstream 68432 24278637 ~ 24279387 (-)
G87573 NA non-coding upstream 335877 24546082 ~ 24548123 (-)
G87627 NA non-coding upstream 777237 24987442 ~ 24989739 (-)
G87622 NA non-coding upstream 778196 24988401 ~ 24994242 (-)
G87694 rpl15 non-coding upstream 1202199 25412404 ~ 25460562 (-)
AMCG00021634 NA other downstream 700775 23495025 ~ 23498761 (-)
G87263 NA other downstream 861052 23338251 ~ 23338484 (-)
AMCG00021630 NA other downstream 866568 23329325 ~ 23332968 (-)
AMCG00021619 NA other downstream 1038545 23155187 ~ 23160991 (-)
AMCG00021569 NA other downstream 2528221 21666402 ~ 21671315 (-)
AMCG00021668 NA other upstream 132695 24342900 ~ 24363459 (-)
G87674 NA other upstream 1193445 25403650 ~ 25406538 (-)
G87806 NA other upstream 1695239 25905444 ~ 25908005 (-)
AMCG00021700 NA other upstream 1881022 26091227 ~ 26105391 (-)
G87871 NA other upstream 1941900 26152105 ~ 26154375 (-)

Expression


Co-expression Network