AMCG00021634


Basic Information

Item Value
gene id AMCG00021634
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 23495025 ~ 23498761 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021634
GTTGATTTGTGAAGCCACTGGAACTGATGAGCTACATCACACAGCTAGTGTTAGAGCAACGCCAACGTCACTGACACAATGGTCATCCGACAGCATGCCACACCAAGGGGACTTTGTGTAATGGAGAATGTACTTATTGGGGAAGAAATAAAGTGAATTGACTTTCTGGTAaaggttgtatttattttccagtgctGATAACACATGGGAGCCACAAGACAACCTTGACTGCCCAGAGCTCATTGAGGAGTTCCTGAACTGTTTAAATATTGCTGAGCGGACAGAGGAGAGCCCATCACAGCCGGCAGCGCAGGAGAGAGAGCTGGAAAATGACACCGAGCTGGAAACTGAACAAGAGCAGCCTCTGCATTGTGAGGTGATAGAGAGCGAAGAGAAGATGGCGGAGGGGCAGGTACGGGGTTTCGCCAATGGACTCGAACCTGAGCGCATTATTGGATCCACAGACAGCAAAGGGGAGCTCATGTTCCTGGTGAAATGGAAAGATTCTGAAGAGGTGGATTTAGTGTCGGCCAAAGAAGCCAGTGTGAAGTGCCCCCAGGTGGTCATTGCATTTTATGAGGATAAACTCACCTGGCATTCGTGCCCTGAAGACGACCAGCAACCGTAAAACCTCACACCGGCAGCTCTGAAACGCCCAtatggaacaaatatatattctcaagtatattttagtctgtaatccgtatctttgttttatatgttgaatCTCACCATTtgcaaactgtaaaatatggattacagactaaaatacatttaaaatgcatcccatggatttcaaatacaaaaaaggggTCGATTTAGGCTAATTAAAAGTATAAGGATCCCACATTTCTACCAtaaatgaaatatgtttgtttcGCATGGGcatacacagagaaaacaggTTCATGGCAGCTTTTATATCAACGACGTGTGCTCAGATACTGTGCTCTGTTCTCAGAGCTTTTTCATCCTCCCTTGTttagttattgttttctgtgtcaGGAGCTGTCAAAGCTGCATTCGTACAGTGATGTTAAGCTATCATTTTTATGATGTgaatttcagtttgtgtttaattttggtTCGATAGCGTTTCCTATTAAATGAAACCCTGAGTGattgtctgttgtttttactGGGAATAACAGTCATGTCAAGTGAGTGTTCGAGCAATAAGAGCTGCTGAAAGCTTCTCAGACCCTAGAAAAAAACGGAAGTGAAGAGGGAGTGATTTAAGTGGCAAACCAAAATGCTTCCCTGGTGGCTGGAtgtgatatgtatatattagacTTTGGATAAATACTAAAATGTTTGTTACATTAATCCAGTCATTTTAATCAACTTCCTTCCCAGGTTGTGTCATTTTAATGATGTGATTCTGATCCCAGTACAAGCTAGTACTGTATAGTAACTTAagagtttagttttttacttCTAATATGTCAGTTGGTTTATTAGTGTTTGttagtgttttaatgtgtatttgtaacaTTGGTGTAAATTTcagattacatatttttatttctctgtacaAAACAAGCCTTATATTTAGTTGCATTCATCATTTTCAATGTCATTTCAATAAACAAACCTCACAGCGAAATTTCACACtgtatttgaattgatttgcacTTGGCATTCATGATGAGGAAATGTTGGTGTTTCAGTAATAGAACGCTTTGCAGGTCGAATTTTCTAATTGCATTGTGATGTGTGTGGGAGAGATTGTATTGGAAGGACCAGAAGTTCTAGTTCAGATAAAAGGCTTCATGTTTCAAGGAATGCTTTTTCTCAGCCAAAATGGGGCTCTGCTCCTTTAAGGGGAGTCAGGGCAGGTAGACTGGTCAGGACTGGCCTACAAACACGGaactttaaattataaatcattttcttttgctgtggAGGTGTACGGTTGTTTATCTGAGCACAATCAAGAAGCCTGGacattaatttgcatatttcagtttgtttctttgtactCAGTGTTGCTTCATTTACTtatatattctgctttattTGACTATAACAATGTCCTGAAATAATCCTCAGTGTAAATCAGCAAATACACCCATTcccattttgaaattaaaactgaaaccaCATGCCAAATGGcagattttcttgtttttttttctctcatagGAAAAGAGAAGTCAGACAATTAATACTTTCCTAAAAGGAAcctggaaataaata
>TU108976
TGCAAggatacatgatgcaatagcttttaatttcatcacttttcaggaggaatgaagcattatttcaatgagctgtaagggtaccaacaaatttgagcacgtctgtagtTGTTGAAACTGCTAATAGTGTTGACTCTGAGGTCCTAGTCACGGCCAGACAATATTCTCATCCCCAGCTGTAGGATTGCAAATGGCCACGTTGATTTGTGAAGCCACTGGAACTGATGAGCTACATCACACAGCTAGTGTTAGAGCAACGCCAACGTCACTGACACAATGGTCATCCGACAGCATGCCACACCAAGGGGACTTTGTGTAATGGAGAATGTACTTATTGGGGAAGAAATAAAGTGAATTGACTTTCTGGTAaaggttgtatttattttccagtgctGATAACACATGGGAGCCACAAGACAACCTTGACTGCCCAGAGCTCATTGAGGAGTTCCTGAACTGTTTAAATATTGCTGAGCGGACAGAGGAGAGCCCATCACAGCCGGCAGCGCAGGAGAGAGAGCTGGAAAATGACACCGAGCTGGAAACTGAACAAGAGCAGCCTCTGCATTGTGAGGTGATAGAGAGCGAAGAGAAGATGGCGGAGGGGCAGGTACGGGGTTTCGCCAATGGACTCGAACCTGAGCGCATTATTGGATCCACAGACAGCAAAGGGGAGCTCATGTTCCTGGTGAAATGGAAAGATTCTGAAGAGGTGGATTTAGTGTCGGCCAAAGAAGCCAGTGTGAAGTGCCCCCAGGTGGTCATTGCATTTTATGAGGATAAACTCACCTGGCATTCGTGCCCTGAAGACGACCAGCAACCGTAAAACCTCACACCGGCAGCTCTGAAACGCCCAtatggaacaaatatatattctcaagtatattttagtctgtaatccgtatctttgttttatatgttgaatCTCACCATTtgcaaactgtaaaatatggattacagactaaaatacatttaaaatgcatcccatggatttcaaatacaaaaaaggggTCGATTTAGGCTAATTAAAAGTATAAGGATCCCACATTTCTACCAtaaatgaaatatgtttgtttcGCATGGGcatacacagagaaaacaggTTCATGGCAGCTTTTATATCAACGACGTGTGCTCAGATACTGTGCTCTGTTCTCAGAGCTTTTTCATCCTCCCTTGTttagttattgttttctgtgtcaGGAGCTGTCAAAGCTGCATTCGTACAGTGATGTTAAGCTATCATTTTTATGATGTgaatttcagtttgtgtttaattttggtTCGATAGCGTTTCCTATTAAATGAAACCCTGAGTGattgtctgttgtttttactGGGAATAACAGTCATGTCAAGTGAGTGTTCGAGCAATAAGAGCTGCTGAAAGCTTCTCAGACCCTAGAAAAAAACGGAAGTGAAGAGGGAGTGATTTAAGTGGCAAACCAAAATGCTTCCCTGGTGGCTGGAtgtgatatgtatatattagacTTTGGATAAATACTAAAATGTTTGTTACATTAATCCAGTCATTTTAATCAACTTCCTTCCCAGGTTGTGTCATTTTAATGATGTGATTCTGATCCCAGTACAAGCTAGTACTGTATAGTAACTTAagagtttagttttttacttCTAATATGTCAGTTGGTTTATTAGTGTTTGttagtgttttaatgtgtatttgtaacaTTGGTGTAAATTTcagattacatatttttatttctctgtacaAAACAAGCCTTATATTTAGTTGCATTCATCATTTTCAATGTCATTTCAATAAACAAACCTCACAGCGAAATTTCACACtgtatttgaattgatttgcacTTGGCATTCATGATGAGGAAATGTTGGTGTTTCAGTAATAGAACGCTTTGCAGGTCGAATTTTCTAATTGCATTGTGATGTGTGTGGGAGAGATTGTATTGGAAGGACCAGAAGTTCTAGTTCAGATAAAAGGCTTCATGTTTCAAGGAATGCTTTTTCTCAGCCAAAATGGGGCTCTGCTCCTTTAAGGGGAGTCAGGGCAGGTAGACTGGTCAGGACTGGCCTACAAACACGGaactttaaattataaatcattttcttttgctgtgg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021634 True 2199 mRNA 0.39 3 23495025 23498563
TU108976 False 2103 lncRNA 0.40 3 23495319 23498761

Neighbor

gene id symbol gene type direction distance location
AMCG00021629 NA coding downstream 191279 23265750 ~ 23303746 (-)
AMCG00021627 NA coding downstream 232845 23254939 ~ 23262180 (-)
AMCG00021621 tra2a,LOC107688335 coding downstream 342704 23145357 ~ 23152321 (-)
AMCG00021622 NA coding downstream 367548 23127220 ~ 23127477 (-)
AMCG00021620 igf2bp3,LOC108273237 coding downstream 385274 23096480 ~ 23109751 (-)
AMCG00021637 NA coding upstream 167832 23666593 ~ 23667210 (-)
AMCG00021635 hoxa2aa,hoxa2,hoxa2b,LOC107685611,LOC107684556 coding upstream 172664 23671425 ~ 23673576 (-)
AMCG00021636 NA coding upstream 179070 23677831 ~ 23685846 (-)
AMCG00021639 NA coding upstream 198883 23697644 ~ 23698829 (-)
AMCG00021641 NA coding upstream 210440 23709201 ~ 23710134 (-)
G87287 cbx3,LOC108425284,LOC105023664 non-coding downstream 6813 23482972 ~ 23488212 (-)
G87282 NA non-coding downstream 13125 23433216 ~ 23481900 (-)
G87269 NA non-coding downstream 122833 23371190 ~ 23372192 (-)
G87234 NA non-coding downstream 297182 23197581 ~ 23197843 (-)
G87218 NA non-coding downstream 388837 23093588 ~ 23106188 (-)
G87427 NA non-coding upstream 578138 24076899 ~ 24077107 (-)
G87428 LOC103376870 non-coding upstream 581975 24080736 ~ 24133311 (-)
G87495 NA non-coding upstream 779876 24278637 ~ 24279387 (-)
G87573 NA non-coding upstream 1047321 24546082 ~ 24548123 (-)
G87627 NA non-coding upstream 1488681 24987442 ~ 24989739 (-)
G87263 NA other downstream 156541 23338251 ~ 23338484 (-)
AMCG00021630 NA other downstream 162057 23329325 ~ 23332968 (-)
AMCG00021619 NA other downstream 334034 23155187 ~ 23160991 (-)
AMCG00021569 NA other downstream 1823710 21666402 ~ 21671315 (-)
G86808 NA other downstream 2411455 21063858 ~ 21083570 (-)
AMCG00021662 NA other upstream 700775 24199536 ~ 24210205 (-)
AMCG00021668 NA other upstream 844139 24342900 ~ 24363459 (-)
G87674 NA other upstream 1904889 25403650 ~ 25406538 (-)
G87806 NA other upstream 2406683 25905444 ~ 25908005 (-)
AMCG00021700 NA other upstream 2592466 26091227 ~ 26105391 (-)

Expression


Co-expression Network