Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00021621 |
| gene name | tra2a,LOC107688335 |
| gene type | coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030130.1 |
| NCBI id | CM030130.1 |
| chromosome length | 39556810 |
| location | 23145357 ~ 23152321 (-) |
| genome version | AmiCal1_2021_bowfin_Genome |
| symbol | description |
|---|---|
| tra2a | Predicted to enable RNA binding activity. Predicted to be involved in positive regulation of mRNA splicing, via spliceosome. Predicted to be part of spliceosomal complex. Orthologous to human TRA2A (transformer 2 alpha homolog). |
| description |
|---|
| PREDICTED: transformer-2 protein homolog alpha isoform X1 |
| id | description |
|---|---|
| K12897 | TRA2; transformer-2 protein |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00021621 | True | 1241 | mRNA | 0.52 | 9 | 23145357 | 23152321 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00021622 | NA | coding | downstream | 17880 | 23127220 ~ 23127477 (-) |
| AMCG00021620 | igf2bp3,LOC108273237 | coding | downstream | 35606 | 23096480 ~ 23109751 (-) |
| AMCG00021614 | NA | coding | downstream | 77618 | 23061533 ~ 23067739 (-) |
| AMCG00021615 | fam126a,LOC107667581,LOC107570921 | coding | downstream | 96514 | 23026312 ~ 23048843 (-) |
| AMCG00021616 | LOC105905466,LOC102209663,LOC102295699 | coding | downstream | 122556 | 23017658 ~ 23022801 (-) |
| AMCG00021627 | NA | coding | upstream | 102618 | 23254939 ~ 23262180 (-) |
| AMCG00021629 | NA | coding | upstream | 113429 | 23265750 ~ 23303746 (-) |
| AMCG00021637 | NA | coding | upstream | 514272 | 23666593 ~ 23667210 (-) |
| AMCG00021635 | hoxa2aa,hoxa2,hoxa2b,LOC107685611,LOC107684556 | coding | upstream | 519104 | 23671425 ~ 23673576 (-) |
| AMCG00021636 | NA | coding | upstream | 525510 | 23677831 ~ 23685846 (-) |
| G87218 | NA | non-coding | downstream | 39169 | 23093588 ~ 23106188 (-) |
| G87203 | NA | non-coding | downstream | 54246 | 23089602 ~ 23091111 (-) |
| G87193 | NA | non-coding | downstream | 69342 | 23075634 ~ 23076015 (-) |
| G87181 | NA | non-coding | downstream | 130575 | 23007394 ~ 23014782 (-) |
| G87116 | NA | non-coding | downstream | 454468 | 22690608 ~ 22690889 (-) |
| G87234 | NA | non-coding | upstream | 45260 | 23197581 ~ 23197843 (-) |
| G87269 | NA | non-coding | upstream | 218869 | 23371190 ~ 23372192 (-) |
| G87282 | NA | non-coding | upstream | 280895 | 23433216 ~ 23481900 (-) |
| G87287 | cbx3,LOC108425284,LOC105023664 | non-coding | upstream | 330651 | 23482972 ~ 23488212 (-) |
| G87427 | NA | non-coding | upstream | 924578 | 24076899 ~ 24077107 (-) |
| AMCG00021569 | NA | other | downstream | 1474042 | 21666402 ~ 21671315 (-) |
| G86808 | NA | other | downstream | 2061787 | 21063858 ~ 21083570 (-) |
| AMCG00021534 | bet1,LOC107669829,LOC107722155 | other | downstream | 2420477 | 20721884 ~ 20724880 (-) |
| G86649 | NA | other | downstream | 2747574 | 20395612 ~ 20397783 (-) |
| G86640 | NA | other | downstream | 2785102 | 20358301 ~ 20360255 (-) |
| AMCG00021619 | NA | other | upstream | 2866 | 23155187 ~ 23160991 (-) |
| AMCG00021630 | NA | other | upstream | 177004 | 23329325 ~ 23332968 (-) |
| G87263 | NA | other | upstream | 185930 | 23338251 ~ 23338484 (-) |
| AMCG00021634 | NA | other | upstream | 342704 | 23495025 ~ 23498761 (-) |
| AMCG00021662 | NA | other | upstream | 1047215 | 24199536 ~ 24210205 (-) |
