AMCG00021534 (bet1,LOC107669829,LOC107722155)


Basic Information

Item Value
gene id AMCG00021534
gene name bet1,LOC107669829,LOC107722155
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 20721884 ~ 20724880 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021534
TTTCGAGCGTAGGTCCAAATACACGTTAGCTTAGCAGAAAGAAGCGCTTTGAGCAATTACCGTTTTCAGGAGGATAGTTAAAATTAGCAACAAACCCGGATTTGACAGCTTCCCCTTCAAACTGTGACGACTGTAGAGACATCACAATGAGACGCGCAGGTTTGGGTGAAGGAGCGCCCACAGGGAATTACGTTGCCAGTGGATACAGTGTCTATGAAGAGGAAAATGAACAATTGTCAGAAGGTTTGAGAGACAAAGTCAAAGCTTTAAAACATGTACTGTATGGCATGTTTGAGCTACTGCTGTACCTAACTGAGTCTATTCTTTCACAGCTCTCTATCGATATTGGAGCAGAGGTAAAGCACCAAAATAACATGATCACAGAAATGATTCCTCCACATGATGTTGGAGTGTCTCAAGCGGACAAACCATGGCTCTCCATCCTCCCACAGGACAGTGCCTTCGACTCGACGGGGGGGCTGCTGGGGGCCACTATGGGTCGGTTGAAGGTCCTATCTCGGGGAAGCCAAGCCCGGCTCTTCTGCTACCTGCTGCTGTTCGCCCTCTTCGTCTTCTTCGTCCTGTACTGGGTGATCAGACTGAGGTGA
>TU108218
CGCCATTACCCAGCGGCCACGTCGTCTGCCGTATTCCGATGTGTTTGCTGTCGTGGCGTTTCGAGCGTAGGTCCAAATACACGTTAGCTTAGCAGAAAGAAGCGCTTTGAGCAATTACCGTTTTCAGGAGGATAGTTAAAATTAGCAACAAACCCGGATTTGACAGCTTCCCCTTCAAACTGTGACGACTGTAGAGACATCACAATGAGACGCGCAGGTTTGGGTGAAGGAGCGCCCACAGGGAATTACGTTGCCAGTGGATACAGTGTCTATGAAGAGGAAAATGAACAATTGTCAGAAGGTTTGAGAGACAAAGTCAAAGCTTTAAAACATCTCTCTATCGATATTGGAGCAGAGGTAAAGCACCAAAATAACATGATCACAGAAATGGACAGTGCCTTCGACTCGACGGGGGGGCTGCTGGGGGCCACTATGGGTCGGTTGAAGGTCCTATCTCGGGGAAGCCAAGCCCGGCTCTTCTGCTACCTGCTGCTGTTCGCCCTCTTCGTCTTCTTCGTCCTGTACTGGGTGATCAGACTGAGGTGATGAAGAACAGCGCGGCCTGCGCTTTGTGCCACGGCTCTGGACTGAACACAGACGCCGGATGTTGGAATGGAAATGAATCCTGTGAGCAGCAACGATGCCTCTGTAGATCTGTAACTGGGATGcagttcatacattttttttttttttactgaagtcAGCCAAGGATGTTTCTGTGTAACTCAATGCTTCTGAGTAAGATTGCACATTGTTTGTATGAAATGTAAGTGACAATTTACTTGCATCTGTATAGAATATGTAATCCTTTGATTTCAATATGTGTAAAACTGTGGACCACTCTCTCTGACAGACAAACATCTCTCGACAGTAAAACTGAGCCCTAAGGAGATGgaatataaatacaacttaAAGATGTGCCTAAAGGAATAAATGATCCGTTTAGTTCGATTGGgaactgttttttcttcttcttttcttattATCCTAACACAGA

Function

symbol description
bet1 Predicted to enable SNAP receptor activity. Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport and vesicle fusion with Golgi apparatus. Predicted to act upstream of or within protein transport. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of Golgi membrane. Predicted to be part of SNARE complex. Predicted to be active in Golgi trans cisterna. Orthologous to human BET1 (Bet1 golgi vesicular membrane trafficking protein).

NR:

description
BET1 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021534 False 608 mRNA 0.48 5 20722370 20724822
TU108218 True 997 TUCP 0.45 5 20721884 20724880

Neighbor

gene id symbol gene type direction distance location
AMCG00021533 NA coding downstream 28660 20689347 ~ 20693224 (-)
AMCG00021531 calcr coding downstream 82928 20618070 ~ 20638956 (-)
AMCG00021525 cdk6,LOC107667775,LOC107558583,LOC107722162,LOC107567973 coding downstream 261606 20444543 ~ 20460278 (-)
AMCG00021523 cdk6,LOC106588946,LOC107567973,LOC107667775,LOC107558583 coding downstream 286833 20414530 ~ 20435051 (-)
AMCG00021524 fam133b coding downstream 309412 20402783 ~ 20412472 (-)
AMCG00021538 sgce coding upstream 118783 20843663 ~ 20855774 (-)
AMCG00021545 NA coding upstream 174191 20899071 ~ 20902765 (-)
AMCG00021546 NA coding upstream 191803 20916683 ~ 20926715 (-)
AMCG00021549 NA coding upstream 258720 20983600 ~ 21020401 (-)
AMCG00021548 NA coding upstream 309983 21034863 ~ 21038425 (-)
G86689 NA non-coding downstream 107776 20612663 ~ 20614108 (-)
G86648 NA non-coding downstream 327678 20393044 ~ 20394206 (-)
G86639 NA non-coding downstream 365405 20355070 ~ 20356479 (-)
G86598 NA non-coding downstream 382142 20325693 ~ 20339742 (-)
G86530 NA non-coding downstream 569117 20152220 ~ 20152767 (-)
G86736 NA non-coding upstream 96752 20821632 ~ 20822603 (-)
G86738 NA non-coding upstream 98120 20823000 ~ 20823964 (-)
G86739 col1a2,LOC106570460 non-coding upstream 99142 20824022 ~ 20854294 (-)
G86740 NA non-coding upstream 103379 20828259 ~ 20830922 (-)
G86848 NA non-coding upstream 450826 21175706 ~ 21184318 (-)
G86649 NA other downstream 324101 20395612 ~ 20397783 (-)
G86640 NA other downstream 361629 20358301 ~ 20360255 (-)
G86600 NA other downstream 386580 20329422 ~ 20335304 (-)
AMCG00021514 NA other downstream 436905 20281152 ~ 20284979 (-)
AMCG00021495 acbd7,LOC106595206 other downstream 1253102 19446086 ~ 19468782 (-)
G86808 NA other upstream 338978 21063858 ~ 21083570 (-)
AMCG00021569 NA other upstream 941522 21666402 ~ 21671315 (-)
AMCG00021619 NA other upstream 2430307 23155187 ~ 23160991 (-)
AMCG00021630 NA other upstream 2604445 23329325 ~ 23332968 (-)
G87263 NA other upstream 2613371 23338251 ~ 23338484 (-)

Expression


Co-expression Network