AMCG00021531 (calcr)


Basic Information

Item Value
gene id AMCG00021531
gene name calcr
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 20618070 ~ 20638956 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021531
ATGCTCTCTTCACAGAGGACGACCCCCGGCCGTGCCGCAGGGACGCACACCGAGCCCACGCTAGAAGTGGTTGTCTCGCCTGTAGTGATGCAGAAAGCCAATGTAAGGCAAAAAATTATCGAGGCTCAAATCAAATGCCTTGAAAAAGGAGatcaacagaacaaaataacaggtaacaaaatcataatttatgCTCAATGGTTTTGTGTGCAAGAATGGCCCTACTGCAATCAGACCTGGGACGGGTGGCTGTGCTGGGGTGACACCCCCGCTGGGACGTACGCCTCCCAGAGCTGCCCTGACTACGTCCCAGGCTTTGACCCCATGGGACCATACTGCAATCGCACCTGGGACGGGTGGCTGTGTTGGGGCGACACCCCCGCGGGGACCTACACCTCCCAGAACTGCCCGCCATATTTTATAGACTTTGACTCCACTGAAAAGGCCACGAAATACTGCGATGAAGCCGGGCACTGGTTCCGACACCCCGATAACAACAGGACCTGGTCTAACTACACGTTGTGTATAGCGCACACAGAGGGCAAAGCAAAGATGGCACAAATCCTGTACTACATGGCGATTGTGGGTCATACTTTGTCAATAGTGTCACTGTTGATCTCCCTGGTGATATTCTTTTATTTCAAGAGCCTCAGCTGCCAAAGGATAACCCTCCACAAGAACCTGTTCTGCTCATACTTGTTTAACTCCGTGTTTACGATTGTAAACCTCATCAGCGTCACCAGCAAACCCTCACTCCTGCAGTCCATTCCTGTGGGCTGCAAGGTTCTGCACTTTTTCCAGCAGTACATGATGGGCTGTAACTATTTCTGGATGCTGTGCGAAGGGATTTACCTGCACACCCTGATTGTGGTGGCGGTGTTTGCAGAGGAGCAGCATCTGCACTGGTACTATCTCCTAGGGTGGGGATTCCCTCTGGTGCCGGCGTCCATCTACGCTGTGGCGAGAACAAAATACTTTGATGACAACTGCTGGATGAGCGTGGAAACACAACTGCTCTACATTGTTCACGGACCCATCATGGCAGCGTTAATAGTAAACTTGTTCTTCCTGCTCAACATTGTCCGGGTGTTGGTCACGAAGCTGAGGGACACCCATCGAGCCGAGTCCAACATGTACATGAAGGCTGTGCGAGCCACGCTGATCCTCGTCCCTTTGCTGGGAATTCAATTTGTGGTCGTTCCCTGGAGACCTGAAAACAGACTGGCTGGAGAAATATACGATTACGTTATGAACGTATTAATGCATTATCTGGGATTGTTGGTGTCGACgatattttgctttttcaacGGGGAGGTGCAGGCGGCGCTCAAGAGGCAGTGGATGCAGTACAAGGCCCAGTGGGGCCAGCGGCGGCGGGAGCACTGCTCCATGCGCTCCACCTCGTACACAGCCACGTCCATCACCGAGGTGCCCGTCTACCTGTACCACCATGACTGCAACAGCGAGCAGCTCAACGGCCGGCAGACGGAGGACAAGGAGCTGGAGGCGCTGAAGTCCAGAGAGACGTACGCCTGA

Function

symbol description
calcr Predicted to enable calcitonin receptor activity. Predicted to contribute to amylin receptor activity. Predicted to be involved in adenylate cyclase-activating G protein-coupled receptor signaling pathway and positive regulation of cytosolic calcium ion concentration. Predicted to act upstream of or within G protein-coupled receptor signaling pathway and cell surface receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in axon and plasma membrane. Is expressed in several structures, including eye; gill; heart; integument; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in osteoporosis. Orthologous to human CALCR (calcitonin receptor).

NR:

description
PREDICTED: calcitonin receptor

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004948 calcitonin receptor activity molecular_function

KEGG:

id description
K04576 CALCR; calcitonin receptor

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021531 True 1536 mRNA 0.53 12 20618070 20638956

Neighbor

gene id symbol gene type direction distance location
AMCG00021525 cdk6,LOC107667775,LOC107558583,LOC107722162,LOC107567973 coding downstream 157792 20444543 ~ 20460278 (-)
AMCG00021523 cdk6,LOC106588946,LOC107567973,LOC107667775,LOC107558583 coding downstream 183019 20414530 ~ 20435051 (-)
AMCG00021524 fam133b coding downstream 205598 20402783 ~ 20412472 (-)
AMCG00021520 NA coding downstream 228626 20378423 ~ 20389444 (-)
AMCG00021521 NA coding downstream 241500 20371800 ~ 20376570 (-)
AMCG00021533 NA coding upstream 50391 20689347 ~ 20693224 (-)
AMCG00021538 sgce coding upstream 204707 20843663 ~ 20855774 (-)
AMCG00021545 NA coding upstream 260115 20899071 ~ 20902765 (-)
AMCG00021546 NA coding upstream 277727 20916683 ~ 20926715 (-)
AMCG00021549 NA coding upstream 344644 20983600 ~ 21020401 (-)
G86689 NA non-coding downstream 3962 20612663 ~ 20614108 (-)
G86648 NA non-coding downstream 223864 20393044 ~ 20394206 (-)
G86639 NA non-coding downstream 261591 20355070 ~ 20356479 (-)
G86598 NA non-coding downstream 278328 20325693 ~ 20339742 (-)
G86530 NA non-coding downstream 465303 20152220 ~ 20152767 (-)
G86736 NA non-coding upstream 182676 20821632 ~ 20822603 (-)
G86738 NA non-coding upstream 184044 20823000 ~ 20823964 (-)
G86739 col1a2,LOC106570460 non-coding upstream 185066 20824022 ~ 20854294 (-)
G86740 NA non-coding upstream 189303 20828259 ~ 20830922 (-)
G86848 NA non-coding upstream 536750 21175706 ~ 21184318 (-)
G86649 NA other downstream 220287 20395612 ~ 20397783 (-)
G86640 NA other downstream 257815 20358301 ~ 20360255 (-)
G86600 NA other downstream 282766 20329422 ~ 20335304 (-)
AMCG00021514 NA other downstream 333091 20281152 ~ 20284979 (-)
AMCG00021495 acbd7,LOC106595206 other downstream 1149288 19446086 ~ 19468782 (-)
AMCG00021534 bet1,LOC107669829,LOC107722155 other upstream 82928 20721884 ~ 20724880 (-)
G86808 NA other upstream 424902 21063858 ~ 21083570 (-)
AMCG00021569 NA other upstream 1027446 21666402 ~ 21671315 (-)
AMCG00021619 NA other upstream 2516231 23155187 ~ 23160991 (-)
AMCG00021630 NA other upstream 2690369 23329325 ~ 23332968 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000054_02652696_02685815 CALCR coding CI01000054 null 2652696 ~ 2685833 (+)