AMCG00021523 (cdk6,LOC106588946,LOC107567973,LOC107667775,LOC107558583)


Basic Information

Item Value
gene id AMCG00021523
gene name cdk6,LOC106588946,LOC107567973,LOC107667775,LOC107558583
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 20414530 ~ 20435051 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021523
ATGCTCTACTCTGTCCTCCAGTCGCTGAAGGTGGTCACACTATGGTACCGAGCCCCCGAGGTGCTGCTTCAGTCCAGCTACGCTACACCAGTGGACCTGTGGAGTGTGGGCTGCATATTCGCCGAGATGTTCAGAAGAAGGCCTCTCTTCCGAGGAAACTCTGATGTCGACCAGCTAGGAAAAATCTTCGAtgTCACTGGAGTTCCCAGCGAGGAGGACTGGCCCTGTGACGTGGCTCTGCCCCGGAGTGCCTTCTCTCTGCGCCCGTCGAAGCCCATCGGGGAGCTGGTTCCGGACATCGATGAGCTGGGGAAGTCCCTGCTGCTGCAATTTCTGACGTTCAGCCCCTCCAAGAGAATTTCGGCGTACGCTGCTTTGTCCCACGCCTACTTCCAGGACGTCGAGGGCGGGAATAAGAGTGTGCATTCGCAGACCCCGTCCAGCCAGGCGACCTCCGAGGAGAGCGCGGCGTGAGAGAGGCACGTGGGCCCGCCCATGACTCGGAGACCAGGTCCCGGGCCTCCCCAGAGGTTTTGGTTCACGAGCTGCAGTCTCGTCGTGATGTTCATCGGTATGGCTGGTTTTTTAacggaaaaggaaaaagaaaaaggagtcTTCCACAACACCCTATGCTGCTTTGAGAACTAACTTCGGAACATCGAGAAAAGCctatgtgtttaattgttttaccTTGTTTTCGGTCTGGTCACCAACAATGCAAGGAGCGCCGGCGCCGTCTGTCCGGGCAGAGCTCTGGAGTCCCGGACGCAGTTTACCTCACCTGCTGCCGGTGTGTCGAAACTACAGATGCTGCCAGGCCCTCGGAACCGCTCCAAATACCCTCGCTGCCAGTAACTCCAGGGGCTTAATCAGTCAAGCTGCTCCGGCCTCTCTATATCCCTCTCCTGGATGCTGATTTTGTGTGTAGGTGTGGGTGTCCATATATGTGTGCATCTCTGGGATTTTGTGTATCGTCGCGTCGagttttgtcatgtttttccTCTCGTTGTCACATTAAGTGTTGCGTGTCGATGAAAGTCACATAAATATTGCGTTTGGCGCGTCTGCCATCTGGCGGTGTGTCGGTGCCAGTGCAGGCAGACAGTCATCTCTGAGAGAAGGATTAATACCGGATCTTGGCACCTGAATTCACACACGTTCTCCTTTCACGTCAAAAGACAAACAAGTCACAAGAATGTAACGGAAGCTaagttattttaatctgtaCACAACTACACGCTATGTGGGACTTTTCAATGCCCAATTCACAAGGAAAAGTACCTTCTCTTTCACTTCACGGGACAATCTAACGCAATAATTTGACGGACTAGATTGTATCTTATACGGAGGCTTCCTATCTTAACTTACAGATCTGTATTGTTCAGTTTATACCataataattaatctatttttccatataattaaagtaatataatGGCTTTCTTATTTCcacagaacattttttaaagcagttatcaaaatataatattgtatactgtatagcTCTATATTAAGTCCCTGAACACAGAGCTTCTGGTAAAGGTACTATTCTTCCACTTTTCTATATTTACTGTTGTTCTTTACATACAGCAGTTGCAAAACCATGTGCCTTGCATGAGTCTCGGCCTGTCCTGGTAAAGTAGGTCCAAACCATGATGTCAGTGCTTTTCAAATTGAATTGCTGTGAAATCCAATGACGTCAGGGACACCAGAAGGTGctggaaatgtttgtttttgtcaagttatttattttggaataactcaaccaatgttttatttatttttttactgttctCTGTAGAAAAGAGAATGATGTGCTATCACTAAAATCAAAAATCCTCTTGGTTTTATAGTTTTCTGCGTATCAGAGAATGAAATTGAACATGTTTGTCAAAATCAGACTCAAATTCAAACACCAGAAACAGACTTCAACTCTCTTACCAGATCGGCAGCTCGCTCAAGTTGCAGATTAATAAAAGGCATCCTTTCACTCTGGCatgttaaaaataagttttagaGTATGTGGCGGAGGAAGTGTAAAAATGGTTGCCGTTAAAGACACTTGATTTTGTATAATCCGAACGGAAGTGTATCAAACGGAAAACGTAGAAGCGACGGTACTTTATTGGTACATAGTGGACAGATCATGTGTGTGGATGTGCTGGATAAGCCGTAGAGTTGCAGTAGTGCAGGTAAATGGCAGGATGAGAGGCTGCTTCCTGTCTCCCAGAGCCCCTGAGAAAGCTCCTCTGTGGGCAGGGGACGGGGTCCGGTAGCCGGGCGTGCTGGTTCGCGGATCCCGGTACGGCTGGAACAATTCTGGCCGGGTTCTGCTCGCAGGTGGATCGAGTCCAGGCCGTCCCAATGACCCCCACTGAAGTCCAGACAAACACTCCAGTCTCGCTGGTATCTGTACCGCACTGACCGTCACGACCATAACCATCTCTGCCATGTGGCTCCAGGAATAACAGCCACACGGCAGAGATGGTTACGGTCGTGACTGGGGTTGAGTCCGGCTTCTATGGTTCCCGGGAGAACTgccacacaacaacacagtcAGGTTGTGCATCAGGACCGGCCGGTGATAGATTGACCAGACTCCCAGGATCCTTCATTCCTGGCCGTGCCGTGTCCGTGAACCAGTCAGAAGGCAGATACCTCACAGACAAAATACTGAGAAagctcaaatgtaatataagATAGTGATCTATCATTCTCAATACgagtttcttcttttttttaatactattaataataataatgatactagTACACAATTATCAGTCACTCCTAAAATGTGTCATGGTAGCAGTGTAGTAGCTTATCACCATTCGAGGGCAGGCATGTTGTTTAGTCTTGTGTTTTGGAGCAGTGCGTCTCCCAGATGAGGCGAGAGGTTGGATCTGTGAGGATGGGACCCATTCGGGTCAGAGGCTCGGAGTGAAAGACTTCCAGAGACAGAGCCGTGGAGATGTGTAGGTAGAGCCTGCAAATGCATACCAGCCGGGAGTCGGGCTCGGCTGGGGAACCAATTTGAAGagtagaaaatgaaaaaaaacgtgTGCATGTGGTCTGAGGGTGGCCGTGTACCGGTGAGGGGAAACGTCCACTTAAAGCTGCAGAGACCCAGACATtatcatatacacacacacacactctggacAGTCACGTGCGGATGGCACATTTCCAGCTGTTCAGTGAAGTGTAGGCATTGATATTGTCCGGTTGCTGGTAGTAGGtgaaatacaacatacatagaaataataaactgcataattttgttattttctggtTGTTTTTAAACCGCTTGGGCACACCGTACAACATATAGTAAATGTTATTTATCATCTTTAACCTTTTATAATGTATAACTCTCATTACAGTATGTCAATAACTCAGTCCGCTTAAGTGCTAAAAGTGTGGTTGGGCTGAAGGTTTATAGTTTGTAATATTGATGTACTATCTTTTGCGCCAGTACAATGTAAGAGTATAGTCAGCAAcaggaattatttttcttccctgttTGATcgagtgtattaaaatataaaacattcaaagatatattttaaagcttctCAGAAAGCTGCCACTGTGATTGTGTTCTGATCACCGAGGGATTGGAATGAACTTCTGCGGAACTCAttactgtatgtgtgtcagCAGATCAACTGTCACCTGAAACGCTCCTGTATGAAAACAAGATGCaactgaaaataactgaagCAGGTATTGATGCTGGggttactgctgctgctgttttactGTTCAAGACCAAGCTATGTTAAAGTCAGTGAATTTCACCCATTATTTGATGGATCTGTAGCCCAGCCTCCCCTGCCAATCAGAACTGATAACACAGAATGAAACCTTGTAACAAATCTGAACTGTTCTTCTTCTAAAGctaaaaaaactgttttgttggaAACTTCACTCTccggtttatttattataaagtttcaggggtttgttttgtttttaatactaaAGATATTCCCATTAACATTTTCTCATGGTCCCAGTTTTCTTATTGAGCATACAGTGACACAGGTCTAAACTTTCTGAAATGACATGCAATcctataatttaatttttcttctgaAGTGTCGTTGGTAtggagtgattttttttttttatggacaaGAATGAAAAGGTGGATGTTTGactcttcaatttcagacactgtgttTGAATACAAAGCATTGTTGTCCTACAAGGTGTAGTACCTGTCCTACAGAGCTTATCAAAGACTATAACTACAAAAAAAGGATGattattttctgatgttttATATAGCAGAAACATGAATTTTATACTttacaatgttatattttaggaaatatttaattactgttgGATTTATATGTTTAGCAAAGCAATAAGGCTGTACTTCAGATACTGGTTAACTGTTTCAGCCCAGCTGGCTTGTCCTCTTTCATAATCAACACAATGTAAAActcatttgtgtcttttgcagAAGTGACACTGATCTGTcaaatttattaatttaacaggaacatgagaataataataatagtgttctAGTGATTGGTCATGTTGATTCACGGTAGATTATGGTGGCTTTTATATTACAGCTTTGGTGCTTTGCTGTTTGAATGATCAGATGGACTTGTTCCACTTGGTGCCGCTCAGAGGTACTGTGTTGGAGTTGTGTTTTCTGCCCACCTGTAAACAGTGCCTCTGACTCTCTTCTTACGCTTACACAATGTTATTTGTTCAAAGTTCTGATTCGTGTGTTTGCTTTTACATATTCATTCacagaatatttatttctcctttccTTCGACCTTGTTTACAACAAACGTGGCAGTTGAAAAGATATTTGCTGTTGTAACACTGACTTACCCTGAAAtctcctgttttgtgtttttatttttgaaacagGGGTGTTATGTCTGTGACTTAAAGATTACCCTGCAAGTCGGAGTTCTTGTACAGGCGCACAGGAACTCGAAACTTGAAAAGCAGATTCTCAGTGGATTGAAAGACAGGTTTAAATGAGCTGTACACCTTCAgagacaaactaacaaaaaggAAGATTAATCTTACCTACCGAGGTCTGGTCCAAGACCGTGTTTAGCATGTGTGTTTGCGTTTATAACAGGGGGGGGGCCCAGCAATGTATCCTTCACACAGTGCTATTAatcaagaaaaatgtaattggtgCTATGAGATACTCCTGTTTCATCTGAGAGAGCAGCCTCTCATTAGGGCTCGTGGTAGAGACCTCTGTCCTGAAGCCCTTTACTCTTTACTGTATCCACGTATACTTGAAACCGTTGTTCCAAAATCAATAGTATCAGGAAGTGGTGCTAAATCTGGCTTCAGAAGTTCCTTGCACAGCGTTGGACAGTTTCACTAGCAGTAACGTTGACCCCTCCTGTAGTTTATAAAATGGCATTAAACTGGCCCACCGATACAGGATCTGAACTCTACATCAGTACATCTATAAACACAATCCATTCCCTGTGTGGGTGAGGAGTGTTATTCCAGCGTGCGTTGTGTCAATAGGTATACTCCTGCACTGTGGCTGAGAGCGAAGGTTATCCTGAGCCTGGTGATGACCCTGCTACATCCCAAACGTGCTTTTTTAGGAGGCGTGATGGGTCGTTTTATCATTGCCTGTTAAGTTATTTAACAACTGATTACAAAATGATTAATCCGAGGCGGAGAAAATGACTTGAGGATTATCGAACCCTGGCAGTCCAAATTGTGAGGCCACTTAGAAACTCTTGCTGCACAATAACTAAAagtgaaagaataaaacaaactggtCATTagactgaaaatgtatatagtgtGATATTTCACTGCtcaatttgtaattgtttgatTTTCACTGGAAACAAGATATTAGGCCAACTAGACTGTGTGCAGAATTGTCCCTGAAATTGCATTTCTTGCTGAGAATGGATGTCATGTTCATTGGCCAGAATACATTGTTTCATCATTTAATGCTCACAGTATTTTTCTGCAGATTTGACAGATTTACTTTTCCAATGGATacagaaaagtattattttgatttcttggTCTTTGATTAAACCTTTTATCTTTACTTTTCTCATAACTGTGAGGCAAAGAAGGCAACAGACTATGAAAACATACTCCACAAGGATAAGCATGTATGCTGTTGTTCTGATCCAGGATATTTCCAAAGTGTCATGGCTACTTTGGTGTGCAAAAAAATCCCATCTAAGCTAAATCCTGtttaactggagtgaggttgttagtggagttccacagggatcagtactagggccattgctttttctaatctatattgatgatctggactctgggatagttagcaaacttgtcaaatttgcagatgatactaaaataggtggctcagcagatacaatctcggcagcacaggttattcagagggactgataatattcagttatgggccgacacctggcagatgaaattcaatgtggacaagtgcaaggtattacatgcaggtaacaaaaatgtccactataattacactatgggaggaatagaactagaagacgTAACACATGAGAA

Function

symbol description
cdk6 Predicted to enable RNA polymerase II CTD heptapeptide repeat kinase activity and cyclin-dependent protein serine/threonine kinase activity. Predicted to be involved in protein phosphorylation and regulation of cell cycle. Predicted to act upstream of or within cell dedifferentiation; phosphorylation; and regulation of cell population proliferation. Predicted to be part of mediator complex. Predicted to be active in nucleus. Is expressed in brain; gill; gonad; kidney; and retina. Human ortholog(s) of this gene implicated in high grade glioma; lung non-small cell carcinoma; pancreatic adenocarcinoma; pancreatic ductal carcinoma; and primary autosomal recessive microcephaly 12. Orthologous to human CDK6 (cyclin dependent kinase 6).

NR:

description
PREDICTED: cyclin-dependent kinase 6-like

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0051301 cell division biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021523 True 6552 mRNA 0.43 5 20414530 20435051

Neighbor

gene id symbol gene type direction distance location
AMCG00021524 fam133b coding downstream 2058 20402783 ~ 20412472 (-)
AMCG00021520 NA coding downstream 25086 20378423 ~ 20389444 (-)
AMCG00021521 NA coding downstream 37960 20371800 ~ 20376570 (-)
AMCG00021519 krit1 coding downstream 116880 20287321 ~ 20297650 (-)
AMCG00021515 LOC106570209 coding downstream 135155 20275058 ~ 20279375 (-)
AMCG00021525 cdk6,LOC107667775,LOC107558583,LOC107722162,LOC107567973 coding upstream 9492 20444543 ~ 20460278 (-)
AMCG00021531 calcr coding upstream 183019 20618070 ~ 20638956 (-)
AMCG00021533 NA coding upstream 254296 20689347 ~ 20693224 (-)
AMCG00021538 sgce coding upstream 408612 20843663 ~ 20855774 (-)
AMCG00021545 NA coding upstream 464020 20899071 ~ 20902765 (-)
G86648 NA non-coding downstream 20324 20393044 ~ 20394206 (-)
G86639 NA non-coding downstream 58051 20355070 ~ 20356479 (-)
G86598 NA non-coding downstream 74788 20325693 ~ 20339742 (-)
G86530 NA non-coding downstream 261763 20152220 ~ 20152767 (-)
G86477 NA non-coding downstream 495727 19912537 ~ 19918803 (-)
G86689 NA non-coding upstream 177612 20612663 ~ 20614108 (-)
G86736 NA non-coding upstream 386581 20821632 ~ 20822603 (-)
G86738 NA non-coding upstream 387949 20823000 ~ 20823964 (-)
G86739 col1a2,LOC106570460 non-coding upstream 388971 20824022 ~ 20854294 (-)
G86740 NA non-coding upstream 393208 20828259 ~ 20830922 (-)
G86649 NA other downstream 16747 20395612 ~ 20397783 (-)
G86640 NA other downstream 54275 20358301 ~ 20360255 (-)
G86600 NA other downstream 79226 20329422 ~ 20335304 (-)
AMCG00021514 NA other downstream 129551 20281152 ~ 20284979 (-)
AMCG00021495 acbd7,LOC106595206 other downstream 945748 19446086 ~ 19468782 (-)
AMCG00021534 bet1,LOC107669829,LOC107722155 other upstream 286833 20721884 ~ 20724880 (-)
G86808 NA other upstream 628807 21063858 ~ 21083570 (-)
AMCG00021569 NA other upstream 1231351 21666402 ~ 21671315 (-)
AMCG00021619 NA other upstream 2720136 23155187 ~ 23160991 (-)
AMCG00021630 NA other upstream 2894274 23329325 ~ 23332968 (-)

Expression


Co-expression Network