AMCG00021519 (krit1)


Basic Information

Item Value
gene id AMCG00021519
gene name krit1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 20287321 ~ 20297650 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021519
ATGACGCTTTCCGGATCTGAGCCCCCCAGCACCATGGGCCATCAGGACAACCTGGAGGACGTGTTCGTCGCTGTCATTCGCCCAAAAAACACCATCCTCCTGTTAGAAGTTCCTCTGGAAGGcaaggagaagaaaaggaaaaaagttctTCTCGGGACCAAGATACAAGCCGACAGCGACCGGTCCCGGACAATTTTGGAATATGTGGACGAAACGACAAAGCCTATATCTAACAACCAGGGAATCAAAGGCAAGAGAGTCGTGTACATGAAGAAGTTTGCTCTGGAGGGCGAGGATGTGGGGAAGGAGGCATCTCTGTTCATTGTTCCAATCACAGTCAAAGACAACAGCAAACCTGTGTACTGCCCCGGGAGCCCGAGCTTCTACTGCTTCCAGGACATCATGCGCGTGTGCAGCGAGACCAGCGTGCACTTCTCCTCGCTGACCGCCCGCATGCTCATGGCCCTGGACAACGTTGCCATGTTGTCTCTGCTCAGGTGGCTGTTGGAGCAGCACACAGTTCCCCACGCGGTCCCGGCTCTGTTCAGACCCGCCCCCATGGAGAGGGTGAAGACCAGCGTGACCAACCCCGCCTACTCCAACGAGAGCAGCCAATTGGAGGGCACGCTGCACATGGGCTACACTGCCCTGGAGATCAAGAGCAAGATGATGTCACTGGAGAAGGCGGACATGTGTGTCCAGAACCCGCTGTACGGCTCTGACCTGCAGTACACCAACCGGGTGGACAAGGTGGTCATTAACCCCTACTTCGGCCTGGGAGCTCCAGACTACTCCAAAATCCAGATCCCCAAGAGGGAGAAGTGGCAGCACAGCATGAGCAGCGTGACCGAGGACAAGGAGCGCCAGTGGGTGGACGACTTCCCGCTGCACCGCAGTGCCTGCGAGGGCGACACCGCGCTGCTCACCAAGCTCCTGGACAGCGGCTTCTCCGTCAACCAGCTGGACAGCGACCACTGGGCCCCCATACACTACGCCTGCTGGTATGGGAAGGCCGAGGCCACGCAGCTGTTGCTGGAGAAGGGGAAGTGCAACCCCAATCTCCTGAACGGCCAGCTCAGCTCCCCCCTGCACTTCGCGGCCGGAGGGGGGCACTCGGAAATAGTGCAGCTCCTACTGCAGCACCCCGAGACGGACCGGCACATCGTGGACCAGCAGGGGAGGTCGCCGCTGCAGGTGTGTGAGGAGAACAAGCAGAACGACTGGGAGGAAACGGCCAAGCTCCTCCAGCAGGCCGCCAGCAAACCATACGAGAAAGTGAGGATTTACCGCATGGACGGCTCATACCGCTCCGTGGAGCTGAAACACGGGAACAACACGTCTGTGCAGCAGATCCTGGAGGGCATGCGTCTGTCCCAGGAGACGCAGCAGTACTTCACAATCTGGATCTGCTCGGAGAACCTCAGTCTGCAGCTGAAACCCTACCACAAGCCCCTCCAGCACCTGCGGGTGTGGCCTGACATCGTGACCGAGCTGACCGTACTGGACCCCCAGAGGGAGACCCCGCAGCTCTTCCTACGCAGAGACGTGCGGCTGTCGCTGGACATCGAGAAGAAGGTGGAAGACCCCCTGTCCATCCTCATCCTGTTCGACGAGGCGCGGCACTGCTTGCTAAAGGGTTTTTTCCCGTCGCCCGACAGCAAACTGATCACCCTGGCCAGCCTGCTCCTGCACATCATCTACGGGAACTACGAGAGCAAGAAGCACAAGCAAGGCTTCCTCACCGAGGAGAATCTGAAATCTGTCGTCCCCATATCAAAGATCAAGAGCAAAGCACATCACTGGACCAACAGGATACTTCACGAATACAAGACCCTCAGCACCAGCGAGGGCGTCAGCAAGGAGATGCACCACCTGCAGCGGCTGTTCCTGCAGAACTGCTGGGACATCCCCACCTACGGGGCGGCCTTCTTCACCGGCCAGGTGTTCACCAAGGCCAGCTCCAGCAACCACAAGGTCATCCGCGTCTACGTGGGCATCAACACCAAGGGGCTGCATCTCATGAACATGGAGACCAAGGCCCTGCTCATCAGCCTCAAGTACGGCTCCTTCATGTGGCAGCTGGGAGAGGCCGATCAGTACTTCCAGATCCACAGCCTGGAGAACAAAATGAACTTCATTGTTCACACCAAACAGGCCGGCCTCATTGTCAAACTCCTCATGAAGTTAAGTGGACAGATGACGCCCAACGACAGAAGTTTATCAGACAAGTATGGCTACGGATAACTCAAATACTCCACACGCTCTTCTGAACACTGCTTTGTCCTGTATATTATTTTGCTGTGATGGAATATTATCTGATTGCCTGTTGCGAGACGCGCCGTCCTTCTGTGATGTGAACGCTCCCGTCGGAGAAGACAACATCAAAGAGACTCATGAGGACACGAGACTAGACAAGGGCACCAGACAAGGGATTTTCACAGGAGTCTGATGAAGCAAAACGCTCCAATACCCTATGGACAGTGGACTTCTGGATTTAGTTTCACATCCAGTACGCACGGCTGAGTCACTGCAGGTCGTGTCCCCTGTGTGAATGTCTTGCTTCGGTATTAATAACTTCAGCAACTCTCGTTTCCATTTCCCCAGTTAACAGCTGATGGTTGGACTGATTttgtaaatatctgtatttaagtgtggtttttttttttatgttttgttgtttttgaataaaataatatactgtagtgccTTGACACATTGTTTACTGTCCTGCGGCATGGgatgaataaaacattcactCCAGTGTGGGAGATCTGTTACGTCTCATGGGGGAAACAATCGAG

Function

symbol description
krit1 Acts upstream of or within several processes, including circulatory system development; endothelial cell morphogenesis; and negative regulation of endothelial cell differentiation. Predicted to be located in several cellular components, including cell junction; cytoplasm; and cytoskeleton. Predicted to be active in plasma membrane. Is expressed in head; notochord; post-vent region; posterior cardinal vein; and ventricular zone. Used to study cerebral cavernous malformation 1. Human ortholog(s) of this gene implicated in cerebral cavernous malformation and cerebral cavernous malformation 1. Orthologous to human KRIT1 (KRIT1 ankyrin repeat containing).

NR:

description
krev interaction trapped protein 1

GO:

id name namespace
GO:0001525 angiogenesis biological_process
GO:0007033 vacuole organization biological_process
GO:0045602 negative regulation of endothelial cell differentiation biological_process
GO:0001570 vasculogenesis biological_process
GO:0001886 endothelial cell morphogenesis biological_process
GO:0003007 heart morphogenesis biological_process
GO:0072554 blood vessel lumenization biological_process
GO:0005874 microtubule cellular_component
GO:0005886 plasma membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K17705 KRIT1; Krev interaction trapped protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021519 True 2801 mRNA 0.55 17 20287321 20297650

Neighbor

gene id symbol gene type direction distance location
AMCG00021515 LOC106570209 coding downstream 7946 20275058 ~ 20279375 (-)
AMCG00021516 NA coding downstream 79845 20206322 ~ 20207476 (-)
AMCG00021509 NA coding downstream 325224 19951017 ~ 19962097 (-)
AMCG00021508 NA coding downstream 377648 19905943 ~ 19909673 (-)
AMCG00021504 NA coding downstream 496149 19786814 ~ 19791172 (-)
AMCG00021521 NA coding upstream 74150 20371800 ~ 20376570 (-)
AMCG00021520 NA coding upstream 80773 20378423 ~ 20389444 (-)
AMCG00021524 fam133b coding upstream 105133 20402783 ~ 20412472 (-)
AMCG00021523 cdk6,LOC106588946,LOC107567973,LOC107667775,LOC107558583 coding upstream 116880 20414530 ~ 20435051 (-)
AMCG00021525 cdk6,LOC107667775,LOC107558583,LOC107722162,LOC107567973 coding upstream 146893 20444543 ~ 20460278 (-)
G86530 NA non-coding downstream 134554 20152220 ~ 20152767 (-)
G86477 NA non-coding downstream 368518 19912537 ~ 19918803 (-)
G86472 NA non-coding downstream 374918 19903996 ~ 19912403 (-)
G86474 NA non-coding downstream 386485 19900458 ~ 19900836 (-)
G86386 NA non-coding downstream 838827 19446417 ~ 19448494 (-)
G86598 NA non-coding upstream 28043 20325693 ~ 20339742 (-)
G86639 NA non-coding upstream 57420 20355070 ~ 20356479 (-)
G86648 NA non-coding upstream 95394 20393044 ~ 20394206 (-)
G86689 NA non-coding upstream 315013 20612663 ~ 20614108 (-)
G86736 NA non-coding upstream 523982 20821632 ~ 20822603 (-)
AMCG00021514 NA other downstream 2342 20281152 ~ 20284979 (-)
AMCG00021495 acbd7,LOC106595206 other downstream 818539 19446086 ~ 19468782 (-)
G86327 NA other downstream 1009298 19275354 ~ 19278023 (-)
AMCG00021483 NA other downstream 1012881 19259434 ~ 19274440 (-)
G86241 NA other downstream 1377413 18821533 ~ 18909908 (-)
G86600 NA other upstream 31772 20329422 ~ 20335304 (-)
G86640 NA other upstream 60651 20358301 ~ 20360255 (-)
G86649 NA other upstream 97962 20395612 ~ 20397783 (-)
AMCG00021534 bet1,LOC107669829,LOC107722155 other upstream 424234 20721884 ~ 20724880 (-)
G86808 NA other upstream 766208 21063858 ~ 21083570 (-)

Expression


Co-expression Network