AMCG00021635 (hoxa2aa,hoxa2,hoxa2b,LOC107685611,LOC107684556)


Basic Information

Item Value
gene id AMCG00021635
gene name hoxa2aa,hoxa2,hoxa2b,LOC107685611,LOC107684556
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 23671425 ~ 23673576 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021635
GCTGGTTGTTGGGGTCCTGTGTCAAAACTTTCAAGATTAATGGATGACTTTGTTAATGACTCAGATGTAGGTGCTCGGGTGATTTGTGAGGTGTGGGGCGTTTTTCTGACAGTCAGAAACAATGCACGGAGTGAGCAGGAGCTGCAGGAAAGACAGGCTGCCTGTGACACTGGcgattcaaatatattttaatggtgtAGCGCAGTAATGAACAAACTGACCAAAAcgtgtaaataaaaacagtgcgACCCCAGAAACGAGGCGTTCCTTACAGACTTTTTTGGATCAATCACGCAGACAGTGGCTTCTTTTGATTAAACCCCAAATTGTCATTGGGCAGCAGTAATCATGTGACAACCAATTCGGTCCAATTTCAACCTTGTCTCCATGAATTCAATAGTTTAATAGTAGCGCGGTCCCCATACGGCTGTAATCAGTGAATTAGAAAAAACACTAGCCGcgatttttatgattttttttttttggtcggGGCCACAACATACAAATAAGAGCTAACTTTCTAAAGCTCGGAGGGAAAGGGAGATGAATTACGAATTTGAGCGAGAGACTGGTTTTATCAATAGTCAGCCGTCGCTTGCTGAGTGCCTGACATCTTTTCCCCCTGTCGGTGATACATTTCAAAGTTCATCAATCAAGAGCTCGACGCTTTCACACCCGACACTGATTCCTCCTCCTTTTGAGCAGACCATTCCCAGCCTAAACCCAGGCAGCCATCCTCGCCACAGCCGCCCAAAACAGAGCCCCAATGGCAGCAGCCCCTTGCCGGCCGCTTCCCTTCCCCCGGAGTACCCCTGGATGAAGGAGAAAAAAGCTTCCAAGAAAAATCACCTGCCGACTTCTTCAGCCACAGCTACAGCAACCCCGGGACCGGTCTGCTTCCCCCCGAAAGCCCTCAACAATGTCTCCGGAGCTCTCCTGGAAAGGGAGGGTTACACATTTCAACAAAATTCCCTGACTGCACAACAGGCTCACAATATGCACAATGGAGATGTCCAAAGTTTCACTGTTTCGCCTTTAAGCAGCAATGACAAAAATGTGAAACATCTCCAGAACCCGTCCCCCACTGTTCAGAACTGCTTGTCAACAATGGCCCAGAACTGCGCAGCTGGCCTGAACAATGACAGTCCCGAGGCCCTGGACGTCTCCTCTTTGCAGGATTTTAACGTTTTCTCATCAGATTCCTGCCTACATCTCTCAGATGCTGTTTCCCCCAGTTTGCCAGAATCCCTCGACAGCCCTGTGGACATTTCTACGGACAGTTTTGATTTTTTCTCGGACACTCTCACAACCATCGACCTCCAGCATCTGAACTATTAA

Function

symbol description
hoxa2b Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in several structures, including hindbrain; hindbrain neural keel; hindbrain neural plate; neural crest; and pharyngeal arch. Orthologous to human HOXA2 (homeobox A2).
hoxa2 Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including animal organ development; regionalization; and regulation of transcription by RNA polymerase II. Located in nucleoplasm.

NR:

description
homeobox protein HoxA2aa

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09302 HOX_2; homeobox protein HoxA/B2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021635 True 1338 mRNA 0.48 2 23671425 23673576

Neighbor

gene id symbol gene type direction distance location
AMCG00021637 NA coding downstream 4215 23666593 ~ 23667210 (-)
AMCG00021629 NA coding downstream 367679 23265750 ~ 23303746 (-)
AMCG00021627 NA coding downstream 409245 23254939 ~ 23262180 (-)
AMCG00021621 tra2a,LOC107688335 coding downstream 519104 23145357 ~ 23152321 (-)
AMCG00021622 NA coding downstream 543948 23127220 ~ 23127477 (-)
AMCG00021636 NA coding upstream 4255 23677831 ~ 23685846 (-)
AMCG00021639 NA coding upstream 24068 23697644 ~ 23698829 (-)
AMCG00021641 NA coding upstream 35625 23709201 ~ 23710134 (-)
AMCG00021640 NA coding upstream 37933 23711509 ~ 23720100 (-)
AMCG00021642 NA coding upstream 50885 23724461 ~ 23727144 (-)
G87287 cbx3,LOC108425284,LOC105023664 non-coding downstream 183213 23482972 ~ 23488212 (-)
G87282 NA non-coding downstream 189525 23433216 ~ 23481900 (-)
G87269 NA non-coding downstream 299233 23371190 ~ 23372192 (-)
G87234 NA non-coding downstream 473582 23197581 ~ 23197843 (-)
G87218 NA non-coding downstream 565237 23093588 ~ 23106188 (-)
G87427 NA non-coding upstream 403323 24076899 ~ 24077107 (-)
G87428 LOC103376870 non-coding upstream 407160 24080736 ~ 24133311 (-)
G87495 NA non-coding upstream 605061 24278637 ~ 24279387 (-)
G87573 NA non-coding upstream 872506 24546082 ~ 24548123 (-)
G87627 NA non-coding upstream 1313866 24987442 ~ 24989739 (-)
AMCG00021634 NA other downstream 172664 23495025 ~ 23498761 (-)
G87263 NA other downstream 332941 23338251 ~ 23338484 (-)
AMCG00021630 NA other downstream 338457 23329325 ~ 23332968 (-)
AMCG00021619 NA other downstream 510434 23155187 ~ 23160991 (-)
AMCG00021569 NA other downstream 2000110 21666402 ~ 21671315 (-)
AMCG00021662 NA other upstream 525960 24199536 ~ 24210205 (-)
AMCG00021668 NA other upstream 669324 24342900 ~ 24363459 (-)
G87674 NA other upstream 1730074 25403650 ~ 25406538 (-)
G87806 NA other upstream 2231868 25905444 ~ 25908005 (-)
AMCG00021700 NA other upstream 2417651 26091227 ~ 26105391 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_009856 hoxa2b coding NC_007127.7 CM002900.2 20926673 ~ 20929183 (+)
grasscarp (Ctenopharyngodon idella) CI01000016_08315282_08316952 HOXA2B, HOXA2 coding CI01000016 null 8314973 ~ 8317178 (+)