CI01000016_08315282_08316952 (HOXA2B, HOXA2)


Basic Information

Item Value
gene id CI01000016_08315282_08316952
gene name HOXA2B, HOXA2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 8314973 ~ 8317178 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_08315282_08316952.mRNA
CCATAAATGCGTAAATAAACTAGCCCGTCCCAGAGAGTGAGGCGTTCCTCTCGGACTTTTTTCGATCAATCACACAGACAGTGGCTCCTTTTGATTAAACCCCAAATTGTCATTGGACAGAGGTAATCATGTGACAAGCAATACGGTCCAATTTCAACCTTGTCTCCATGAAAGCAATAGTTTAATGGCACCGCGGTCCCCATACGGCCGTAATCAGCAAAATAGTTTTTTTTAACCCGGCACGATATTTCATTATATCTTCCTTGGGTCACAAATTTGTGAGCGGCGAATTTGCAAGACTTGGAGGAGATGAATTACGAATTCGAGCGAGAGACGGGTTTTATCAATAGTCAGCCGTCGCTCGCTGAGTGCCTGACATCTTTTCCCCCTGTCGGTGATGCATTTCAAAGTTCATCAATCAAGAGCTCGACGCTTTCACACTCGACACTGATTCCTCCTCCTTTTGAGCAGACCATTCCAAGCCTGAACCCCGGCAGCCACCCTCGCCACAGCCGGCCCAAGCAGAACCCTAATGGCTCATGCCCGCTGCCTGCCGCATCCTTACCCCCAGAGTACCCTTGGATGAAGGAGAAAAAAGCATCCAAGAAAAACCAGACAACTTCGACAGCAACAACCACCGACCCTGGTCCACTATACTTCTCCCCTCAAGGCTCGCCTGAGATTTCTGATGGTGGCAGTGGGGCAACTCGCCGACTCAGAACGGCGTACACTAACACTCAGCTGCTGGAGCTGGAGAAGGAGTTCCACTTCAACAAGTATCTCTGCCGACCAAGGCGTGTGGAAATCGCCGCTCTGCTGGATCTCACCGAGCGGCAAGTCAAAGTTTGGTTTCAAAACCGGAGAATGAAACACAAAAGGCAAACGCAGTGTAAAGAAAACCATAACGGCGATGGAAAACCACCGAGCCTGGAGGAGGCTGGCGGACGGGGTGATGGGAAATCTTTTTTCGAACAAGTGGCAAACAATGTATCAGGGGCGCTTTTGGAAAGAGAGGGTTATCCATTTCAGCAGAATACCTTAACTTCTCAACAGTCACAGAATGGACACAATAGTGATTCCCAAAGCGCAACTGTCTCGCCTTTAGGTAGCAATGACAAACATCTGAAACATTTTCCCAACCCGTCACCCACTGTTCCTATCTGCGCCTCAACAATGGCCCCGGATTGTGCATCTGCTCAGGACAATGGCAGTCCCTCGGCCCTGGACGTCTCTTTACAGGACTTCAACGTTTTCTCCAATGATTCTTGCTTGCACCTCTCAGATGCCGTGTCCCCAAGTTTGTCAGAATCTGTAGACAGCCCCATTGGTTTATCTTCGGAGGCCTTTGATTTCTTCTCCGAGACGCTTACAACAATCGACCTGCAACACTTGAGCTACTAACTCTAACTGAAGTTTCATTATAGGGACGTCAATATTTTCTCACATTGATGGTCTGTGTGTTTAATTGTGACTTTAAAAATAGGCCTAGACCATTAATCACTGAGGTAAGTTTTTCAATAATCGAGTGATAATTTTTGTGTACAGAGAAAATATGGCAGGAAATAAGTGATATTTTTCACGTTTTATTTTTGTATCGCTCACCGGCAAAGCGCCATATTTTCATAGA

Function

symbol description
hoxa2b Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in several structures, including hindbrain; hindbrain neural keel; hindbrain neural plate; neural crest; and pharyngeal arch. Orthologous to human HOXA2 (homeobox A2).
hoxa2 Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including animal organ development; regionalization; and regulation of transcription by RNA polymerase II. Located in nucleoplasm.

NR:

description
Homeo box A2b

GO:

id name namespace
GO:0043565 sequence-specific DNA binding molecular_function

KEGG:

id description
K09302 HOX_2; homeobox protein HoxA/B2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_08315282_08316952.mRNA True 1627 mRNA 0.47 2 8314973 8317178

Neighbor

gene id symbol gene type direction distance location
CI01000016_08304658_08306198 HOXA9B coding upstream 8181 8302914 ~ 8306792 (+)
CI01000016_08299340_08301616 HOXA10B coding upstream 13357 8299340 ~ 8301616 (+)
CI01000016_08293872_08295500 HOXA11B, HOXA11 coding upstream 19473 8293872 ~ 8295500 (+)
CI01000016_08285505_08286793 HOXA13B, HOXA13 coding upstream 27612 8285159 ~ 8287361 (+)
CI01000016_08270091_08279026 HIBADH, HIBADHA, HIBADHB coding upstream 35049 8268720 ~ 8279924 (+)
CI01000016_08323079_08336573 SKAP2 coding downstream 5901 8323079 ~ 8336687 (+)
CI01000016_08390421_08396972 NA coding downstream 73111 8390289 ~ 8397755 (+)
CI01000016_08450823_08453343 NA coding downstream 133450 8450628 ~ 8453377 (+)
CI01000016_08513514_08545976 OSBPL3B, OSBPL3 coding downstream 196336 8513514 ~ 8546137 (+)
CI01000016_08553934_08565167 DFNA5 coding downstream 235665 8552843 ~ 8565246 (+)
G97826 NA non-coding upstream 251663 8058969 ~ 8063310 (+)
CI01000016_07969424_07983149 HACL1 non-coding upstream 331407 7968328 ~ 7983566 (+)
CI01000016_07956184_07965721 C16H2ORF66 non-coding upstream 349292 7956071 ~ 7965940 (+)
G97788 NA non-coding upstream 408415 7906224 ~ 7906558 (+)
G98151 NA non-coding downstream 25933 8343111 ~ 8343467 (+)
G98152 NA non-coding downstream 29514 8346692 ~ 8346893 (+)
G98155 NA non-coding downstream 40845 8358023 ~ 8358279 (+)
G98103 NA non-coding downstream 41467 8358645 ~ 8374582 (+)
G98169 NA non-coding downstream 59343 8376521 ~ 8376813 (+)
G97824 NA other upstream 299198 8014363 ~ 8015775 (+)
CI01000016_07784248_07784757 TWIST1, TWIST1.L, TWIST1A, TWIST1B, TWST2, TWIST1.S other upstream 529250 7783987 ~ 7784996 (+)
G96389 NA other upstream 1153683 7160641 ~ 7161290 (+)
CI01000016_05405791_05407797 AICDA other upstream 2907110 5405791 ~ 5407963 (+)
G95792 NA other upstream 3089032 5219880 ~ 5225941 (+)
G98288 NA other downstream 678920 8996098 ~ 9002717 (+)
CI01000016_09796196_09842235 NA other downstream 1478453 9795950 ~ 9842576 (+)
G99041 NA other downstream 1607240 9924418 ~ 9925654 (+)
G99410 NA other downstream 1917222 10234400 ~ 10236851 (+)
G99456 NA other downstream 1977213 10294391 ~ 10298904 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_009856 hoxa2b coding NC_007127.7 CM002900.2 20926673 ~ 20929183 (+)
bowfin (Amia calva) AMCG00021635 hoxa2aa,hoxa2,hoxa2b,LOC107685611,LOC107684556 coding CM030130.1 CM030130.1 23671425 ~ 23673576 (-)