CI01000016_08323079_08336573 (SKAP2)


Basic Information

Item Value
gene id CI01000016_08323079_08336573
gene name SKAP2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 8323079 ~ 8336687 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_08323079_08336573.mRNA
ATGAGATACGAAGCTGCTCCCCTGTCCTTCAAAAGGTCAAAGGGCACTTCACCTCTCTTTCCCCCTCCACGCCAGATGGATCTGTGGCCAGGGTATGTTATTGCCTCTTCCGTATTTCACAGTCCACTTGTAACTTCCGTGTTTCGAAGGCTATCTTGCTGGGTCAAGCGGTTTATCACAATGAGGTCCATCCCAGAAGAATTAACAACACTCATTTCAGATCTGGAAACCTTTTTGACGGATGTCCTTAAAGGGGAGAATTTGAGCAAGAAAGCAAAAGAGAAAAAGGATGCCTTTATCAAGCGCATTAAAGATGTGAAAACGAGTTACTCTCAAGAATTCAAGGACAAACGAGACGAAGAGTTCCCAGAGCCAGATGAAGCAGACACCAACGATGGAGGATCACTGCACTCAGAGCAGGCTGACAGGGATGACGAAAACGCTTATGATGGAGTTCAACAGTCTCCTGCGGTGGCAGCTCAAGATCTTCAATCTGTTTTTAAGAGTGGCTACCTGGAGAAGCGCCGAAAGGATCACAGCTTCTTTGGCAATGAGTGGCAGAAGAGATGGTGCGCCTTAAGCAGCAACATATTCTACTACTATGGAAGTGAAAAAGATAAACAGCAGAAGGGAGAGTTTAATATTGTCGGATACACCGTCAAAATGAACAACACCCTGCGGAAAGATGCAAAGCGAGATTGCTGCTTTGAGATCTCAGCTCCAGACAAGCGTGTATATCAGTTCTGTGCTGCGTCGGAGAAAGATGCAAAAGAGTGGGTGGAGCACATTGACTTTTTGATTAAAGGTAGTACTGTGCATCATAAAACACTCTCAATCACTAAATTTAGTCTAGCAGACATGGGTGGAATCATTCCTGAAGATGAAGAAGAATATGATGACTGCTTAACTATGTCCCAATCAGCCATGCCAGCAATTATCGATGATGACATCTATGAAGAACTTCCCGAGGAAGAAGCACCCCAGCCTGTTAAACCAACAGTGACCCTGGCCAACAAACCTCCACCACCATCTACCCCTGTGACAGCAGTGAACAAGAGCACAGACTATGAAAACTACTTCCAGGGCTTGTGGGATTGTGCTGGCGACCACCCCGATGAGCTGTCCTTCAAGAGAGGAGACACCATCTACATCCTCAGCAAGGGCAGTCTGGCAGCCAGTGGCATTCTGTCACTTCTCTCTATGTCTGCCCACTGTGTGTGTGCATCACTAAGCTCGTGTGTGTTGGGATTTCAGTATTGGAAGACGGCTCAATGCCATGTTCAGTGTGGTGTAGAAGTGAGTTTGGTTAAAAACTTCCCCTACCTGTCAGCTCTGATGCATATGCAGGCTGTGCAGATCTGTGTACTGCCCGTGGGGTTTGTACCTGGCTAACAGAATTAGCTCAATACCTCTCAGGGCTACTTAAAACAACTCAAGCTGCTCCGTTTCCAGAAACAAACTCGCTATCTTGTGGTTTGTCTACTTAGCACTGTTGCCCTTCAGAGA

Function

symbol description
skap2 Predicted to enable kinase activity. Predicted to act upstream of or within B cell activation and phosphorylation. Predicted to be active in cytoplasm and plasma membrane. Orthologous to human SKAP2 (src kinase associated phosphoprotein 2).

GO:

id name namespace
GO:0005070 obsolete SH3/SH2 adaptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_08323079_08336573.mRNA True 1506 mRNA 0.47 14 8323079 8336687

Neighbor

gene id symbol gene type direction distance location
CI01000016_08315282_08316952 HOXA2B, HOXA2 coding upstream 5901 8314973 ~ 8317178 (+)
CI01000016_08304658_08306198 HOXA9B coding upstream 16287 8302914 ~ 8306792 (+)
CI01000016_08299340_08301616 HOXA10B coding upstream 21463 8299340 ~ 8301616 (+)
CI01000016_08293872_08295500 HOXA11B, HOXA11 coding upstream 27579 8293872 ~ 8295500 (+)
CI01000016_08285505_08286793 HOXA13B, HOXA13 coding upstream 35718 8285159 ~ 8287361 (+)
CI01000016_08390421_08396972 NA coding downstream 53602 8390289 ~ 8397755 (+)
CI01000016_08450823_08453343 NA coding downstream 113941 8450628 ~ 8453377 (+)
CI01000016_08513514_08545976 OSBPL3B, OSBPL3 coding downstream 176827 8513514 ~ 8546137 (+)
CI01000016_08553934_08565167 DFNA5 coding downstream 216156 8552843 ~ 8565246 (+)
CI01000016_08628196_08630801 NA coding downstream 291509 8628196 ~ 8631378 (+)
CI01000016_08270091_08279026 HIBADH, HIBADHA, HIBADHB non-coding upstream 54101 8268720 ~ 8279924 (+)
G97826 NA non-coding upstream 259769 8058969 ~ 8063310 (+)
CI01000016_07969424_07983149 HACL1 non-coding upstream 339513 7968328 ~ 7983566 (+)
CI01000016_07956184_07965721 C16H2ORF66 non-coding upstream 357398 7956071 ~ 7965940 (+)
G97788 NA non-coding upstream 416521 7906224 ~ 7906558 (+)
G98151 NA non-coding downstream 6424 8343111 ~ 8343467 (+)
G98152 NA non-coding downstream 10005 8346692 ~ 8346893 (+)
G98155 NA non-coding downstream 21336 8358023 ~ 8358279 (+)
G98103 NA non-coding downstream 21958 8358645 ~ 8374582 (+)
G98169 NA non-coding downstream 39834 8376521 ~ 8376813 (+)
G97824 NA other upstream 307304 8014363 ~ 8015775 (+)
CI01000016_07784248_07784757 TWIST1, TWIST1.L, TWIST1A, TWIST1B, TWST2, TWIST1.S other upstream 537356 7783987 ~ 7784996 (+)
G96389 NA other upstream 1161789 7160641 ~ 7161290 (+)
CI01000016_05405791_05407797 AICDA other upstream 2915216 5405791 ~ 5407963 (+)
G95792 NA other upstream 3097138 5219880 ~ 5225941 (+)
G98288 NA other downstream 659411 8996098 ~ 9002717 (+)
CI01000016_09796196_09842235 NA other downstream 1458944 9795950 ~ 9842576 (+)
G99041 NA other downstream 1587731 9924418 ~ 9925654 (+)
G99410 NA other downstream 1897713 10234400 ~ 10236851 (+)
G99456 NA other downstream 1957704 10294391 ~ 10298904 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location