CI01000016_08285505_08286793 (HOXA13B, HOXA13)


Basic Information

Item Value
gene id CI01000016_08285505_08286793
gene name HOXA13B, HOXA13
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 8285159 ~ 8287361 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000016_08285505_08286793.mRNA
CTATATAAAGGTAGCTATGTAAAATGTAGTCCCATTGCGCAATGGAATGCCACTTGATTTCCTCTTTAGGATAAAGCTTATCACCAGAATCTTTATAGGTATTTTTGACCAAATCCCTCCACTTTGTTTCAGGTCAGTGCAGTATGTTTGTCTTGCTAGATCGGCGTTATCTCCAGTTTAGACGTTTATCAGCCTCTTTGCAAGTCACGTGCCTCCGCTCGTCCAATAATAGTTGGATCTTGACGCACACGGGACTCATGGGTATCTGTTACTCCACTGATCCACTGCTTCTCTTTCAGTCTTGGGGAATTCTAAAAGAGCTGGTTGGCTCCATGTAGGGCGTGCTATGACAGCGTCTTTACTCCTCCATTCCCGCTGGATTGACCCGGTGATGTTTCTCTATGACAACGGCTTGGATGATATGAGCAAAAACATGGAAGGATTTGTGGGAGGCAATTTTGCTGCTAATCAGTGCAGGAATCTTATTGCCCACCCGTCTTCTCTGGCCCCGAGCACAACCTACTCGTCGAGTGAGGTGCCAGGGTCGGGCATGGGAGAACCTGTCAAACAATGCAGTCCGTGTTCAGCCGTGCAGAATTCTCCCAGTGCTTCTTTGCCCTATGGATATTTTGGCGGCAGCTACTACCCGTGTAGGATGCCCAAGTCCTGCACGCAGCCCACCTCCTATGGGGAAAAATACATGGACACGTCTGTTTCTGGAGAGGATTTCCCTTCTCGTGCTAAGGAATTTGCCTTCTACCAGGGTTACTCGTCTGGCCCTTACCAGCCTGTACCGAGTTATCTTGACGTGCCAGTCGTACCTGCGCTGAGCGCCCCTGCGGAGCCACGACACGAGTCTCTTCTGCCTGTTGAAACGTACCAGCCCTGGGCAATCACGAACGGATGGAGTAGTCCGGTGTACTGCCCGAAAGATCAAACACAGTCAAACACCTTATGGAAATCGTCTATTCAAGATACTGTGTCAGGTACGGATGGAGCGTCAGTGCGTCGAGGGAGAAAGAAGCGGGTTCCCTACACCAAGGTTCAATTGAAGGAACTAGAACGAGAATATGCCACAAATAAGTTCATCACTAAAGACAAACGAAGAAGGATATCTGCTCACACAAACCTGACCGAGCGACAAGTGACCATCTGGTTTCAAAACAGGCGGGTGAAAGAGAAGAAAGTGGTCAACAAGTACAAGGGCATCAGTTAAGGTCTGACATTTTTTTTAAAACTGAAATACCAAAGGGGTATAAATGGAAGGACCTTCGACATTATTTATTCTGAAATCCATTCCATCATCTGTTCCACGTCACGAGACTATTGCGGAGATGCGCAGGAGGGAAAATGTAGCTGTGTACATATTACCAATACACTGACATTGATAAAAGCGAAGATACTGCTCAAGAAAAATGTACCTATATTCACCACCTGATTTCCATTCTTTTGAATCTATAATGTCTTTGACAGAAAGACGTGGGAGGAATGTAAATTCACAGTGAAAGAAAATCAGTGAAGTAAACAGACAAACCCATGGCAATTCGTGTATTTTTTTATTTTTATTTTTACACATCATCACGTTTCCAGAAAAACAACTGTACCTTTCAGACTGTGGATTCGAATGCTACGCTAACTGTACGCTAAATTTACCCCAAGACTGTTCTGAGCTTTTCTGTTTCTTTTACTTTTTTAGCCCCATACGCACATTTGTAAATACAAAGTCGCTTTCAGGCTCCTGCGAGATATACAAATTCTCATGTGTTACTGCAGACAGTATGCAA

Function

symbol description
hoxa13b Enables DNA-binding transcription factor activity, RNA polymerase II-specific. Acts upstream of or within fin development and negative regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Is expressed in several structures, including chondroblast; pectoral fin; pectoral fin bud; pectoral fin field; and tail bud. Human ortholog(s) of this gene implicated in Guttmacher syndrome and hand-foot-genital syndrome. Orthologous to human HOXA13 (homeobox A13).
hoxa13 Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including circulatory system development; endothelial cell differentiation; and reproductive structure development. Located in chromosome; intermediate filament cytoskeleton; and nucleoplasm. Implicated in Guttmacher syndrome and hand-foot-genital syndrome.

NR:

description
homeobox protein

GO:

id name namespace
GO:0043565 sequence-specific DNA binding molecular_function

KEGG:

id description
K09298 HOX_13; homeobox protein HoxA/C/D13

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000016_08285505_08286793.mRNA True 1784 mRNA 0.45 2 8285159 8287361

Neighbor

gene id symbol gene type direction distance location
CI01000016_08270091_08279026 HIBADH, HIBADHA, HIBADHB coding upstream 5235 8268720 ~ 8279924 (+)
CI01000016_08217170_08228700 JAZF1 coding upstream 56381 8217084 ~ 8228778 (+)
CI01000016_08205087_08210367 NA coding upstream 74045 8204854 ~ 8211114 (+)
CI01000016_08092843_08098938 CPVL coding upstream 186221 8092773 ~ 8098938 (+)
CI01000016_08090285_08090545 NA coding upstream 194565 8090285 ~ 8090594 (+)
CI01000016_08293872_08295500 HOXA11B, HOXA11 coding downstream 6511 8293872 ~ 8295500 (+)
CI01000016_08299340_08301616 HOXA10B coding downstream 11979 8299340 ~ 8301616 (+)
CI01000016_08304658_08306198 HOXA9B coding downstream 15553 8302914 ~ 8306792 (+)
CI01000016_08315282_08316952 HOXA2B, HOXA2 coding downstream 27612 8314973 ~ 8317178 (+)
CI01000016_08323079_08336573 SKAP2 coding downstream 35718 8323079 ~ 8336687 (+)
G97826 NA non-coding upstream 221849 8058969 ~ 8063310 (+)
CI01000016_07969424_07983149 HACL1 non-coding upstream 301593 7968328 ~ 7983566 (+)
CI01000016_07956184_07965721 C16H2ORF66 non-coding upstream 319478 7956071 ~ 7965940 (+)
G97788 NA non-coding upstream 378601 7906224 ~ 7906558 (+)
G98151 NA non-coding downstream 55750 8343111 ~ 8343467 (+)
G98152 NA non-coding downstream 59331 8346692 ~ 8346893 (+)
G98155 NA non-coding downstream 70662 8358023 ~ 8358279 (+)
G98103 NA non-coding downstream 71284 8358645 ~ 8374582 (+)
G98169 NA non-coding downstream 89160 8376521 ~ 8376813 (+)
G97824 NA other upstream 269384 8014363 ~ 8015775 (+)
CI01000016_07784248_07784757 TWIST1, TWIST1.L, TWIST1A, TWIST1B, TWST2, TWIST1.S other upstream 499436 7783987 ~ 7784996 (+)
G96389 NA other upstream 1123869 7160641 ~ 7161290 (+)
CI01000016_05405791_05407797 AICDA other upstream 2877296 5405791 ~ 5407963 (+)
G95792 NA other upstream 3059218 5219880 ~ 5225941 (+)
G98288 NA other downstream 708737 8996098 ~ 9002717 (+)
CI01000016_09796196_09842235 NA other downstream 1508270 9795950 ~ 9842576 (+)
G99041 NA other downstream 1637057 9924418 ~ 9925654 (+)
G99410 NA other downstream 1947039 10234400 ~ 10236851 (+)
G99456 NA other downstream 2007030 10294391 ~ 10298904 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_009851 hoxa13b coding NC_007127.7 CM002900.2 20895904 ~ 20897836 (+)