AMCG00021918 (cndp2,LOC103371436,LOC104951856,LOC105892098,LOC106958632,LOC106588296,LOC102776275)


Basic Information

Item Value
gene id AMCG00021918
gene name cndp2,LOC103371436,LOC104951856,LOC105892098,LOC106958632,LOC106588296,LOC102776275
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 39255879 ~ 39276056 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021918
AGGCTGCGAGCAGCTGTCAATCACAAACGCAGGCGGACTATTGGTGGGTGAACAGGAAATGTCACGTCCCTTGCTGCTCAAATCCGGCAGCTGTGGGGTGAGTAACACACCGGCGTGCAGACTGATCTCAAGTGTGTGTCAAATGAATTGTGACGTgggattttgatttatttcaacagGCAAGTTTGCGAAtcttggtttctttgttttaagtctctattttgtatatatatattttttctcactTATGACACACACAATGGATCTCTAGCTAACAAGTAATCAATCTAATGCGTACTTTTAGTTATTGTCATATGTTTTTCCTTAGCTGTGATCTACAGGAAGAGCCGAATGATGATCGCATGGTTACTAAAGATATTCATTATATGTAGTTGAAGACTGCGCTGTAGAGTACTAGCAGGAGATGCAGGCGACGATGCAGTCAAACTGAAGTGTTAAGCAGGATGCCAGGCCAGGCGATGCAATTGAGCCTAGAGTGACCGACATGTATGACTTTTTGGGGGCAAAAATAAAAGGTTGTTTCAAACCGTATAAAATGAACACCTTAAGCAAACTTGTAATAATTCACACGtactatgttattattattattattattattactgagaATATTCTGAATTTGAATTCCAGGAACACTGGTAACAGGGAGAAGGGTTACACTAGGGAATACAAGGACAGGAGGCTTTCATTGCTGCATCACCTCTGGCAACTGTGCCCCTGTAATACAGGGAACCACACGTACAGAGCACAGATACAGGCCAACAGCCCTACAATGCCAGTGTAGCCATAGCTTAGTTTCTGGAAATCCTGAAAGTTCTACATACTCGGCATAATCAACAGTTTGATTTCCCCAGCTCATTGTGTAAAAGAGGTGCCACAACCTTATTTCCCATTTTCCCAACAGGTCCATGGTTTTCCTGTAGAAGGTTGTTTGAATTATGGTTGAACTaccgtttaaaaataaaaaaaagtttgaggtCTGAGCAAGAAGATTGATAACAAAGTTTTTCATTCATTCTGAGACTTGacagatttaaatgtttgattttgaCATAtagtacatatttgtttttggaagTGATGGCTATGGTTTAAGTTGTTCACTGTCCAGTTTTTCATGGGACACAGAATGCAGCCAAATACTTTAAATGCCCATATAATTTGTGTTGTAGCAGTTGTGTTTGGCATTTGTTACATGTGTTGTAGCTGTGAGCCCTATCTTGATTGTACTGAACATTGTCTGTCCACTCTAGCATTAGTGCTCTCAATGACTTTCTTCCGTTGTCCACTGTATGTCTCAGATATGCATGTAtagcaatttttttgttttgctctaaGTGCGcactacataaatacataaattgtatttattgaatgtttGCTCCAGTGTGTGTCCTTGCTTGAGCTCACTCTTagcagtttaaaagaaaataattgtgaagTATATTGAACTAAAAATGTACTGAGCTAATAAGACAAAAGTCACtgataactttaaaaataatatatacaatgtttttcttaCAGTATGGCTGTACTCTACCAGGAAACTTGCATTCttgtcatttttataatttttatgattttagttattttgatttattttgaggGGCTAATGGACTCCCTTTCTGGTACAGGTACTGTGCAGGAAATATTGTATGTGATTTAATTCGAGACTAGGGTGCAATGGTCACGTTTTCCTGAGAACATGGTTATTGTTTAACTTCAGAtggcagcattttttttaaagtcattgtgatttttttttcaagtgtcaGCAAAGCTTTCGAAAGCAAAGGGTGGAGCTGTAGCGAAAAAGGAAAGGACATTACTTTAACATTTGTGGCACTCTTCAGTAACCGAATAGGCAGCACTTCTTTCCCTCTTCTAGCTCACAAGATGTCTTGCCTTCCACCTTTGTTCAAGTATATTGATGAACATCAGGAACTGTACATAGAGCGCTTGGCAGAATGGGTGGCTGTGCAGAGTGTGTCCGCCTGGCCAGAGAAGAGAGCGGAGATCAAGAGAATGATGCAGATCGCTGCCAAAGAGATTGAGAGGCTTGGGGGAACAGTGGAGCTTGTTGATGTGGGCAAACAAAagCTCGCTGATGGGGCAGAGATTCCCCTGCCTCCTATTATCCTGGGCCAACTGGGCTCAGATCCTGGCAAGAAGACTGTGTGCATCTATGGTCACCTGGATGTTCAACCAGCTGACATTGAAGACGGCTGGGACACAGAGCCTTTCACCCTGGTAGAGAAAGACGGGAAACTCTATGGCAGGGGCTCCACTGATGACAAAGGCCCAGTGCTGGCTTGGTTTAACTGCATAGAGGCCTATCAAAAGATACAACAGgAGCTGCCTATCAATATAAAGTTCTGCCTTGAAGGTATGGAGGAATCTGGGTCAGAGGGATTAGATGACCTGGTTTTTGCTCGCAAAGACACTTTCTTCAAGGATGTTGACTATGTCTGCATTTCTGATAACTACTGGCTGGGCAAAACTAAGCCCTGCATAACATATGGACTCCGAGGCATCTGCTACTTCTTCATAGAGGTGGAAGGCTGTGACAAAGATCTCCATTCTGGTGTCTTTGGGGGCTCAGTCCATGAAGCCATGAGTGATCTCATTGCATTGATGGATTCCCTCGTGGATAAGAAAGGTAAAATTCTCATCCCTGGCATTTACGAAGCAGTGGCTCCCTTAAcagatgaagaaaataaactgtatgaGAAGATAGACTTTGACATGGAGGAGTACTGTAAAGATGTGGGAGCCTGCAAGCTACTGCATAACACAAagGAACAAATTCTGATGCACCGCTGGAggtacccctctctctctctgcatggcATTGAGGGGGCTTTCTCTGCCTCTGGGGCCAAAACTGTCATTCCCCGCAAAGTGATTGGCAAATTCTCCATTCGCCTGGTGCCAGACATGGACCCGAACGTTGTGCAGAAACAGGTGGTCGATTATTTGAACAAGAAGTTTAGTGACCGAGACAGTCCTAACAAGATGAAAGTGGAAATGGGCCATGGGGCAAAAGCCTGGGTCTCTGATTTCAACCATCCTCACTATGTGGCTGGCAGGAAGGCCATGAAGACAGTTTTTGGTGTAGAGCCCGACCTGACCAGAGAAGGTGGTAGCATTCCTGTCACCCTGACATTCCAGGAGGCCACAGGGCGCAACGTCATGCTGCTCCCGGCCCTTAGAGAGTGGGTGGCTGTGGAGAGTGATTCCAGTGATGCGCTGAAGAGACCTGAAGTGGAAAAAATGATGGAAATCACTGCAGAGAAACTCAGAAAAATGGGTGGGAAAGTGGACTTGGTGGATATTGGTAATCAGGAGCTACCCaatggcaaaataattcctcttCCGAAAGTTGTCACAGCTCAGTTtgggaatgaccccaagaagcGGACAGTCTGTGTTTATGGCCATGTTGATGTCCAGCCTGCTAAACAGGAGGATGGGTGGGCAACAGAGCCTTACAACCTGACTGATATTAATGGTAATCTGCATGGAAGAGGGGCATCTGATAACAAAGCTCCAGTTCTTGCCTGGATTCATGCAGTCGAAGCATATCAGGCTCTGAACATCGAACTCCCTGTCAATGTGAAGTACATCATTGAAGGAATGGAGGAAACTGGATCCAATGGCCTGGATGCTATGGTTTCTCAACGGAAAGACACCTTCTTTTCTGACATTGATTACATCATCATATCAGATTGTGGTTGGCTGAGCCGGAGGCCAGCTCTGACCTATGGAACAAGAGGAAACTGTTACTTCTTTGCTGAG
>TU111863
TATGTTTTCAACTAAGAAAAGCGCAGGAAATCCAACTGCATCAAAGCAGACGTATTTAAAACAACGTATTCAAAGGATCCTCAGTAAAACCACcacttattatatttttggttttgcaaATAATGTGTTCAGTCCTCATGCAGTATTAATTTGACTGAATGTCGTTCTATCAGTTTATGTCCTACCACTGCAATTATGTGCCCCAGTTTCCATTCTGTAATTTTGTGGATGTACCGGTCACTTATAAAGTACATCTGAATAACGCTGAGGTGTGTCTGAGTTAACATTGTGAACTCAAACTAAAATCTTTGCCAATCGGACACCACAGTCCAGCCTGAGGAGGCGTTTATGTCAGTATAAAAGGCTACGTCCACGCGGGACAAGAGCAGGGGAGGAAAGGAGACCAAGCAAACAAGCACACATTTCACCAGGGGACACACTGACCGAGATGAATTATTTGCTCTTCTCCTCGATCCTTCTCCTCACTCCAAGCCTCCATGCATTCAACTTGGATGCCTTTAGTAAACACATTGACAGCCACCAAGAGGAATATGTGGAGGCCCTTAGAGAGTGGGTGGCTGTGGAGAGTGATTCCAGTGATGCGCTGAAGAGACCTGAAGTGGAAAAAATGATGGAAATCACTGCAGAGAAACTCAGAAAAATGGGTGGGAAAGTGGACTTGGTGGATATTGGTAATCAGGAGCTACCCaatggcaaaataattcctcttCCGAAAGTTGTCACAGCTCAGTTtgggaatgaccccaagaagcGGACAGTCTGTGTTTATGGCCATGTTGATGTCCAGCCTGCTAAACAGGAGGATGGGTGGGCAACAGAGCCTTACAACCTGACTGATATTAATGGTAATCTGCATGGAAGAGGGGCATCTGATAACAAAGCTCCAGTTCTTGCCTGGATTCATGCAGTCGAAGCATATCAGGCTCTGAACATCGAACTCCCTGTCAATGTGAAGTACATCATTGAAGGAATGGAGGAAACTGGATCCAATGGCCTGGATGCTATGGTTTCTCAACGGAAAGACACCTTCTTTTCTGACATTGATTACATCATCATATCAGATTGTGGTTGGCTGAGCCGGAGGCCAGCTCTGACCTATGGAACAAGAGGAAACTGTTACTTCTTTGCTGAGGT

Function

symbol description
cndp2 Predicted to enable dipeptidase activity. Predicted to be involved in proteolysis. Predicted to be active in cytosol. Is expressed in several structures, including intermediate cell mass of mesoderm; lens; neural crest; solid lens vesicle; and yolk syncytial layer. Orthologous to human CNDP2 (carnosine dipeptidase 2).

NR:

description
PREDICTED: cytosolic non-specific dipeptidase-like

GO: NA

KEGG:

id description
K08660 CNDP2; cytosolic nonspecific dipeptidase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021918 True 3822 mRNA 0.43 14 39255881 39276056
TU111863 False 1155 TUCP 0.44 6 39255879 39259804

Neighbor

gene id symbol gene type direction distance location
AMCG00021917 NA coding downstream 21443 39209015 ~ 39234436 (-)
AMCG00021919 NA coding downstream 63197 39190898 ~ 39192682 (-)
AMCG00021920 znf407,LOC106583495,LOC106605077 coding downstream 203206 39044785 ~ 39052673 (-)
AMCG00021921 NA coding downstream 310378 38938607 ~ 38945501 (-)
AMCG00021913 tshz1,LOC107592027,LOC107748691,LOC107696938,LOC107593600 coding downstream 429584 38819411 ~ 38826295 (-)
AMCG00021916 NA coding upstream 7214 39283270 ~ 39285802 (-)
AMCG00021922 NA coding upstream 95750 39371806 ~ 39373457 (-)
AMCG00021926 NA coding upstream 144201 39420257 ~ 39423376 (-)
AMCG00021923 NA coding upstream 168432 39444488 ~ 39448728 (-)
AMCG00021925 NA coding upstream 199920 39475976 ~ 39479016 (-)
G89657 NA non-coding downstream 316055 38939562 ~ 38939824 (-)
G89631 NA non-coding downstream 438729 38816944 ~ 38817150 (-)
G89630 NA non-coding downstream 611841 38643828 ~ 38644038 (-)
G89625 NA non-coding downstream 764294 38491335 ~ 38491585 (-)
G89618 NA non-coding downstream 830439 38422700 ~ 38425440 (-)
G89716 NA non-coding upstream 57869 39333925 ~ 39334125 (-)
G89723 NA non-coding upstream 107593 39383649 ~ 39385676 (-)
G89724 NA non-coding upstream 109762 39385818 ~ 39386082 (-)
G89748 NA non-coding upstream 186419 39462475 ~ 39462921 (-)
G89749 NA non-coding upstream 188376 39464432 ~ 39465633 (-)
G89611 NA other downstream 858124 38395571 ~ 38397755 (-)
G89598 NA other downstream 972024 38261387 ~ 38283855 (-)
AMCG00021897 smim13,si:dkey-206d17.5,LOC107559689,LOC107551766 other downstream 2568237 36677106 ~ 36687642 (-)
AMCG00021896 tmem170b,LOC107734028,LOC107669975 other downstream 2718161 36524509 ~ 36537718 (-)
AMCG00021895 LOC102226217,LOC106946249,LOC103472391,LOC107092461,LOC103135126,LOC106918615,LOC105905342,LOC104924555,LOC108426791,LOC100705487 other downstream 2817529 36414879 ~ 36438350 (-)
G89765 NA other upstream 209777 39485833 ~ 39486288 (-)
AMCG00021924 eppk1,LOC106938278,LOC107592034 other upstream 210841 39486897 ~ 39548802 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000321_01789650_01796167 CNDP2 coding CI01000321 null 1789304 ~ 1796517 (+)