AMCG00021924 (eppk1,LOC106938278,LOC107592034)


Basic Information

Item Value
gene id AMCG00021924
gene name eppk1,LOC106938278,LOC107592034
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 39486897 ~ 39548802 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021924
ATGACTTACTCTTCTCAGGTCCAAGACATCCTGCAGCATGAAGCGGATTCGAGAGGAGGTCTTCCTCTTTTTGATGACCTGCTCCATCAGGCTGAAGTACCGGTCCATGCGGGGCTGGTGAAAAGGAGGCCCACTCTGCTGGTTGGGGTTGCTAGGCCGGTCCAGCCTAGTCCGCACACCAAAGCCTGGTGCTTGCCTGGTCTACTGCTGGTGATGGAGGTTCCAGTGGGCTGGTATCAGCGAAGAGGTCTGACCGGCATCACTGCTCCAGTGGGCTGCGCTCCTCCCGCTGAGGCCTGGTCCTGGTCTCCCGGGGGCACTGCCTCCTTGAAGCCTGGTCGCCGATCAAGGTCCTCCCCGATCTTCGGTCCCACTTATCCAGGCAGACTGAAGACAAAGCAGTATGCAGACAGAGAGAATGGCGCTGCCACAAAATACTCACCAGGACTTCACAGGCACTGTGGCTGGGGTGTTCTTGGAAATGtcaaatgagaaaataacaatttatcAGGCCATTAAAAAACGCTTACTGAAACAAGGAACAGGTTTAGCCCTCCTAGAAGCACAAGCAGCCAGTGACGGTATCATTGATCCAATCAACAATAAAAGATTTCCAGTTGAAGAGGCTGTGAAGGCAGGTTTAGTGGGATCTGAAATGAAAGGGAAACTCCTCGCAGCTGAAAGGGCTTTAAATGGTTACCAAGATCCCTACACTGGCCAGACGCTGTCTTTGTTCCAAGCCCTACAAAAAGACCTGATTCCAAAACCCTATGCAGTTCGGCTGATGGAAGCCCAAATAAGTACAGGGGGCATTATTGATCCAGTTGAAAAATGCAGGGTTGTTATTGAAGATGCCTGTACACTAGGACACTTTGATGAAAAGATCATTGCTGACCAAGGCGAAGAGAACAAAGTGTTTTTTGATCCAAACTCACAAGATAAACTTACATTCAGGCAACTACTAGATAAATGCACAGTGGATCCAGACACTGGTTTGCTTCTCTTACCTATAGGAGTTACATTAAAAGGCCTGAGAAAAGGGGTTTCTATCACAGAACTCCTGGCATCTAAAATCATAGGGAAGGAGTTGTTTGAGGACTTGCAGCAGGGAACAACAACTACAGAGGAAGTAATGCTTCTGGAAACAGTGAATGATTATCTTGAAGGTACTGGGAGCATTGCTGGTATAGCAGATCTTTCATCTAACAAGATAATGAGCATATATCAAGCAATGAAGGAGGGTTTACTCATGAAAGGAACAGCACTGATCCTACTAGAAGCTCAAGCTGCCACTGGATTTATAATTGATCCAGTGAACAATAAGAAATTAACTGTGGATGATGCTTTAAGAAATAAACTTGTAGGACCAGAGTTTCATGGTAAACTACTTTCAGCAGAAAGAGCAGTTACTGGCTATCAGGACCCTTATACAGGACAAAAAATATCCTTATTTCAGGCAATAGCAAAGGATCTAATTATTAAAGACCATGGCATTCGTCTGCTGGAGGCTCAGATCAGCACTGGAGGCATAATTGACCCAATACACAGTCACCGTTTGCCAGTTGATGTAGCCTATCAGCGAGGCTACTTTGATAAAGTGATGAATGAGATTCTTGCTGACCCAAATGATGATACCAAAGGCTTTTTTGACcctaatacaaatgaaaatctCACTTATTTACAACTGATGGGTCGCTGTTTTGTGGATTTGGCCACTGGACTCTGTCTGCTGCCACTTAAAAATCAACCTGGTGTAGACAGCAAGAACTTTATTGACTATGAAACCAAAATGGCTTTCAAAGAAGTTAAAATATCTGTAAACTGTGGAAAGTTCATGGGAAAGACTGTTTCCCTCTGGAAATTGTTGATGTCAGAATACTTCAGTGAAAATCAAAGGCAAGATATGATTCGTCAGTACAGGGAAGGCAGTCTCACTATTAAGACATTAACATCGATAATTCCTGACTTTATTGAACATTCAGTGAAAAATGCTGAAATTGACTTTGATGGATTAAGGGAAAAGGTTACAGCACAGCAGCTTCTAGATGCAGAAGTCATTACTAAGAATGATTTTGAACAACTAAGCCAAGGAAAAAAGACAGTTAAAGATGTCACTGAAGATGAAACAGTAAAAACATACTTACAAGGGACAGGATGCATTGCTGGTGTTCTTCTTTCTGACTCTGGGCAGATAATGACCATCTATGAGgctagaagaaaaaataaacttatgCCAGGGACATCACTGATTCTTCTAGAGGCACAAGCTGCCACAGGATTCATCATTGATCCCATTATGAACACAAAGTACTCTGTTGCTGAAGCCGTGAAAGCCAAAATTATTGGCGCAGATGTTCATGGAAAGTTGTCTTCAGCTGAAAAAGCAGTGACTGGTTACAAAGATCCCTACACTGGCAATACAATCTCTCTGTTTCAAGCCATGAAGAAAAATCTAATTGTAAAAGACCATGGGATTCGCCTGCTGGAAGCACAAATTGCCACTGGAGGCATTATAGATCCTGTAAACAGTCACCGCATCCCTGTTCATGTTGCTTACAAGCGGGGCTATTTTGATGAAGAAATGAATCAGATTCTTAATGACACAACAGATGACACTAAAGGCTTCTTTGACCCCAACACTCAGGAGAACCTTACATATTTGCAACTCTTGGAGAGATGTGTAACTGACAGCAGCACAGGCCTTTGCCTATTGCCTCTGAAGGCAAAAAGCAGCAAATTCAGTGTTAATGAGCAgacaaaagaaacatttcaagcCAAGACTGTGAATGTCAAATATGGCAGATTTACAGGCAAAAATGTGACTCTTTGGGATGTCATAAATTCTGAAtatctgtgtgaagaaaaaaggCAAGAGCTGTTCAGATTGTACAAGAACAGGAAAATTACAAtagaacaaataattacaatcatCGTGACAATCATTGAGCAAAATGCGGTTCAGCACCAGGCTAACCTTTTGTTTCAAGGTCTTAGGAAAAAAGTATCTCCCTGGGATCTTGTGAAGTCACAAATAATAGACAAAGAAACATATGATGGATTGATCAATGGGAAGTTGAAACAAGAAGATGTTATTCAGATGGACCAcgtcaaaacatatttaaaagggAGTGACTGTGTGGCTGGGTTAGTGCTAACGTCTACTAATGAAACAATGAGCATATATGAAGCTCAGAAAAAGTGTATTCTGACTCCTGGTACAGCCCTTTACCTGCTGGAAGCCCAGGCTGCTACTGGCTTCATAATTGATCCACTTCAGAACAAAAGGCTTACTGTTGATGAGGCTGTGAAAGCAAAACTCATTGGTCCAGAACTATACGAAAAGCTTCTGTGTGCAGAGAAAGCAGTGACTGGGTATATAGACCCCTACATGGGCAAACATATTTCACTCTTTGAAGCAATGAagaaagatttaattttaaagcaacaTGGCATTCGTTTGCTTGAAGCCCAAATTGCCACAGGTGGTATCATTGACCCTTTAAAAAGCTGTCACTTGCCTCTTGAAGTTGCTTACATGCAGGGGTATTTTGATGAAGAAATGAACAAGACACTCTCAGACCCCAATGATGATAACAAAGGATTTCTTGACCCCAACACCAAAGAAAACCTAACCTACTTGCAgataataaagaaatgcatcaaAGACCCCCAGACAGGTCTTCTGCTCCTACCACTTTCAGGCAAAtttgaaacaaagcaaactaCTGAAATAACAAGgacagataaaaaaataaaggaagaatTTACAAAGCACACACTTAATATTTCAGCTGGGAACTACAGTGGGAGATTTGTCAATCTATGGGAGTTGATTCAATCAGGATACttcactgaagaagaaaaatctaatttaattgaaaagtaCAGATCAAAGAGAGTTACAATCGAAGAGATCATAACAACTGTTACCACAACTATCACAAAATTGGAAAGGCAAGATGTATCTCAACAAACTGTAATGGGACTAAAGAAGCCAGTCTCTCTTGTAAAGTTACGGAATGCAGATATTATTGATGAAAAAACTTTCAAAGAGTTGGAGGAAGGTCAAAAGTTAGTGCAAGATGTAGTTGAAATGGATTCCGTGAAACAATATCTAAAAGGGACAGGAAGTGTTGCTGGGATTTTGGTTGAACCTTCTAAAGAAATTGTATCTATTTATCAAGCCAGTGCCAAAGGACTTCTAATGCCTGGCACTGCACTGCTACTTCTTGAAGCACAAGCAGCCACTGGGTTTATCATTGATCCAATcagaaacagacatttttcGGTTGATGATGCCATCAAAGAAGGACTCATTGGGCCAGAGCTTCATGAGAAATTGCTCCAGGCTGAACAAGCTGTGACTGGATACACAGACCCATGCACAGAAGAGACAATATCTTTGTCTCAAGCCATAAAGAAAGAATATATTGAGAAAAATCATGGAATTCGTCTACTGGAAGCTCAGATTGCCACAGGAGGAATTATTGATCCAATAAATAGCCATCGTGTCCCTCTCAACATTGCATACAGATTAGGATACTTTGATGAAGAAATCAATCAAGTGTTGTCTAACTCTACTGATGACACAAAGGGATTCTTTGATCCagaaactaaagaaaacatCACTTATTCtcaattgaaagaaaaatgtgtgaaagATTCTAACACACGTTTGCTTCTTCTTCCACTACTTGGAAATGGCAGTAGTTCATTCCGCACTGatgcagaaacagaaaatacattcaaaaaacaGACTGTAAACTTCAAGTCAGGAAAGTATAAGGGCAAGACCCTAACCGTTTGGGAAATTCTTTTCTCTAAATacattacagaagaaaaaaggacaCAGCTGGTTAATCAGTACAAGTCAAGAGTATTAACAATGGAGAGCATCATAGAAATTATTACTATGATAATAGAAGAAATAAACTCAaaaacagagaagttcagagGACTCAGGAAGCAGGTATCTGCAAGTGAACTATACGAATCTAAAATAATAACCAAAGACATGTTCAACAAAATTATTGAAGGCAATGTTAGCACAGATGATATAACCAACAATAAGTCAGTGCAAAACTACCTTCAAGGAACTAATTGCATTGAAGGTGTAATTATTCAGTCATCAAAGCAAAAAATGTCCATCTACCAAGCAATGAGAAAAGGCATTCTTACTCCTGGCACTGCACTGGTTCTGCTAGAGGCCCAGGCTGCCACTGGATTTCTAATTGACCCCGTGAAGAACAAGAAGCTTTCAGTACAAGAGGCAGTGGCTGAAGGGCTGGTGGGCAGAGAATTACGTGGTAAACTGTTGTCTGCAGAAAGGGCCGTTACAGGCTACACTGACCCCTACACAGGAAATACCATCTCCCTGTTCCAGGCCTTGAAAAAAGACCTGATTGTGAAGGATCACGGCATCCGCCTCCTGGAAGCCCAGATTGCCACTGGAGGCATCATCGATCCAGTCAACAGTCACCGTTTGCCCATAGAGGTGGCCTACCAGCGAGGATACTTTGACAAGGAAATGAATCAGATCCTCTCCGACCCTGACGATGACACCAAAGGCTTTTTTGATCCCAACACCAAAGAGAACCTCACCTACTTACAGCTGGTGGAAAGAGGAGTCAAAGACCCTGAAACTGGACACTTCTTACTGAATATAGTAAACAAAGGAGAGGAATACTTCTATGTTGATGAAAGAAGTAAAGGGATTCTCAAGTCAACCACCACAGCAAATGCAGTGGGTGCATTCAAAGGTGAGACGGTATCCCTGTGGGAGATCCTCTACTCCGATTA
>TU111971
ACAAGAAGCTTTCAGTACAAGAGGCAGTGGCTGAAGGGCTGGTGGGCAGAGAATTACGTGGTAAACTGTTGTCTGCAGAAAGGGCCGTTACAGGCTACACTGACCCCTACACAGGAAATACCATCTCCCTGTTCCAGGCCTTGAAAAAAGACCTGATTGTGAAGGATCACGGCATCCGCCTCCTGGAAGCCCAGATTGCCACTGGAGGCATCATCGATCCAGTCAACAGTCACCGTTTGCCCATAGAGGTGGCCTACCAGCGAGGATACTTTGACAAGGAAATGAATCAGATCCTCTCCGACCCTGACGATGACACCAAAGGCTTTTTTGATCCCAACACCAAAGAGAACCTCACCTACTTACAGCTGGTGGAAAGAGGAGTTAATGACCCTGAAACTGGACTCTGTTTActttctttatataaatgaattaaGAGTTTGGGATGGTTTGTAAaagtattcatttaattatacacCTAGTCTTTTTTCTCGTGATTAAAATCAATCTTTGTAGTTGAAACTTTGAAAAAGTAATCATACGAATAACAAGACAAGctagactgtttttttttaatagatggTGACAATGTGGAAGGACAACATATTGCATTGacttaaaaaaggttttaaaattcATATCAGAAAAGCGTATTTCACACAGCAGTGTATGTAAATTGTGAAAAATCCTTTTTAAATTTTGGTTTTATGGAGTGGGGGTGGGTTGGGTGGAAGGGTTGGCACACAGGCTTCCAGATATATTCAGCAAAGTGTATGTGTTAGTGTTTAAAGAGAGCTTTTGCCCATTCttagttttaagtttttgtcttagtttaataattattttaatttgcggagatggatggatggatgattgAGCAATCTCAATTTTACTGGAAATttgctttggggaaaaaaaaaacattaataaaggTTTTAAAGCAAGATTGTGTAtggttttt

Function

symbol description
eppk1 Predicted to enable keratin filament binding activity and structural molecule activity. Predicted to be involved in intermediate filament bundle assembly and wound healing. Predicted to be located in cytoskeleton. Predicted to be active in cell junction; cytoplasm; and membrane. Predicted to colocalize with keratin filament. Is expressed in several structures, including EVL; cardiovascular system; epidermis; periderm; and ventral mesenchyme. Orthologous to human EPPK1 (epiplakin 1).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021924 True 5799 mRNA 0.42 3 39488481 39548802
TU111971 False 958 lncRNA 0.39 2 39486897 39489033

Neighbor

gene id symbol gene type direction distance location
AMCG00021925 NA coding downstream 7881 39475976 ~ 39479016 (-)
AMCG00021923 NA coding downstream 38169 39444488 ~ 39448728 (-)
AMCG00021926 NA coding downstream 63521 39420257 ~ 39423376 (-)
AMCG00021922 NA coding downstream 113440 39371806 ~ 39373457 (-)
AMCG00021916 NA coding downstream 201095 39283270 ~ 39285802 (-)
AMCG00021928 NA coding upstream 6705 39555507 ~ 39556745 (-)
G89751 NA non-coding downstream 16793 39468765 ~ 39470104 (-)
G89749 NA non-coding downstream 21264 39464432 ~ 39465633 (-)
G89748 NA non-coding downstream 23976 39462475 ~ 39462921 (-)
G89724 NA non-coding downstream 100815 39385818 ~ 39386082 (-)
G89723 NA non-coding downstream 101221 39383649 ~ 39385676 (-)
G89765 NA other downstream 609 39485833 ~ 39486288 (-)
AMCG00021918 cndp2,LOC103371436,LOC104951856,LOC105892098,LOC106958632,LOC106588296,LOC102776275 other downstream 210841 39255879 ~ 39276056 (-)
G89611 NA other downstream 1089142 38395571 ~ 38397755 (-)
G89598 NA other downstream 1203042 38261387 ~ 38283855 (-)
AMCG00021897 smim13,si:dkey-206d17.5,LOC107559689,LOC107551766 other downstream 2799255 36677106 ~ 36687642 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G161649 NA non-coding CI01000030 null 7009823 ~ 7010268 (+)
eurasian perch (Perca fluviatilis) G136432 LOC106675841,LOC106598963,LOC104953255 misc NC_053124.1 CM020921.1 25798457 ~ 25868610 (+)