XLOC_006245 (fbxo5)


Basic Information

Item Value
gene id XLOC_006245
gene name fbxo5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 46941930 ~ 46958802 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012244
TCGGCGCGATTTGTCGCCAAATTCAAATCCATTAGCAGTGGCGCTTTTTCCTCAAACTCACAAACCATTGTGTTGCCGCTTAAATGCTTGAGCTACCACTGCAATAGCGACAAGGGCGCGTTTATACGGACATATGAGGACGACGTAAATATTGATTTTAACTTTTTAGAGTTTGCTGGTGTCCAAATTCTCCTCAATATGAAGTGTCCAAACTACACTGAGGATTCCACGGTTTTATGCCACATGGAGAAGACTGAAACAGACCTGGGTGAGGTGAAGGGCCATAAGGTTTCGCCACGAAAAACAGGAGCCCTCCCCCTGCGCTCCCCCGCAGCCACCAATGTCTCCACACCTCTGGAGAGCCGAAGCAAAGGCCCCCATAATAAAGAAAACTACCAGAACAAGAGACATTCACTGGATATGGCATCAGATGATGAGgTGATCTTCAGTGGCAGCGGCCTGACCGAAGACAGCGGTTACCTTTCCCTCCATAACAGCCAGGTGGACGTGGACGGACTGGACTCATTAGAGAGGAGTGAAGAGAATTGTGTGTCCTCTCAATCCTTGGACGTTGAGTGTCATTCTGGACCCTGTTTACCTGTGCTGAACTTCCAGGAGGAGGCCTGCCGAGAGCTGCAGAGGAGCTACAAGAAGAACCGAAGCTACGATTGGACCGTCGTCGATAAAGTGGCGGAGAATTTTGGGTTGCATAATGTGATTGGTGGAAAAATGGGACGGCAGTTCGTGGATATCCTCTGCAAGCTGATGAGGAAGGACATGAGGCACATTCTTGCCAGGATTTTGGGCCTGCTGGGAGATTGTGACTTGATAAGCTGTACGAAAGTAAGCCGGACGTGGAGGAAAATAATTTGTCAGGATCAGTTGGCTCTTCAGCGCtggaaaaaagcagaaaaaacacGCAGGGACTCGGGCCGGTCTATGGGATCTTTATCTCGAGACTTCACCTTGGACAGGGTGGTGTTCTCCTGCATGCAGACCGTTTCCTCTCCACCCGCTCACAAGGCTGTTAAGAAGCCGCCATGCCAGATGGGTGGAGCGCAAAATGCGACTAAATCAAGCCGGTTTCAACAGTATGTAGAGGCAGCACAGTCTCTGAAACAGCATGAATCCCTGCGGCGCTGCTCCCGCTGCAGTTCTCCGGCACGCTTTGATGCAGTAATGCAGAGGGCCGTTTGCACACGCATCAGCTGCGCCTTTGAGTTTTGCACATTGTGTCAATCTGCTTTCCATGACTCCACTCCGTGCCGAAACACCATCCGGAGTTTTTCCTCCACACAAAAAACACTGGTTGCCGGCTCCGCTCGAAGCAAGAGGAGCATCCGTCGCCTCTGAGCGCCACATAAGAGGAAAAAAAAGCAATGTTAcaagaactttaaaaaaaaaactacctgtTGGGTTCTTAATCGATTTAAAAGACTTTTAAACATGTGAATATTTTATCTTCCAGAATGTGAAGTGAATTTTGGCCACGTGTGTGGTCACCGCACAGAGTgagagaaggagaaaaaaaaaagaaaagaaaatacaatcCTGTATGCCAAAAGAAAAGACTTGAAGGAGGTCAAACAGCCTCTCAAGGTTTTGTAAATGCTGTTTTATaagattttataaatgttttatcaatgaAATGAAGCATTGCTGTTTgtcttaatgtaaatatttaaatggttGAATAAAgcctatgtatatttttaa
>TCONS_00012245
CGGCGCGATTTGTCGCCAAATTCAAATCCATTAGCAGTGGCGCTTTTTCCTCAAACTCACAAACCATTGTGTTGCCGCTTAAATGCTTGAGCTACCACTGCAATAGCGACAAGGGCGCGTTTATACGGACATATGAGGACGACGTAAATATTGATTTTAACTTTTTAGAGTTTGCTGGTGTCCAAATTCTCCTCAATATGAAGTGTCCAAACTACACTGAGGATTCCACGGTTTTATGCCACATGGAGAAGACTGAAACAGACCTGGGTGAGGTGAAGGGCCATAAGGTTTCGCCACGAAAAACAGGAGCCCTCCCCCTGCGCTCCCCCGCAGCCACCAATGTCTCCACACCTCTGGAGAGCCGAAGCAAAGGCCCCCATAATAAAGAAAACTACCAGAACAAGAGACATTCACTGGATATGGCATCAGATGATGAGgTGATCTTCAGTGGCAGCGGCCTGACCGAAGACAGCGGTTACCTTTCCCTCCATAACAGCCAGGTGGACGTGGACGGACTGGACTCATTAGAGAGGAGTGAAGAGAATTGAGGAGGCCTGCCGAGAGCTGCAGAGGAGCTACAAGAAGAACCGAAGCTACGATTGGACCGTCGTCGATAAAGTGGCGGAGAATTTTGGGTTGCATAATGTGATTGGTGGAAAAATGGGACGGCAGTTCGTGGATATCCTCTGCAAGCTGATGAGGAAGGACATGAGGCACATTCTTGCCAGGATTTTGGGCCTGCTGGGAGATTGTGACTTGATAAGCTGTACGAAAGTAAGCCGGACGTGGAGGAAAATAATTTGTCAGGATCAGTTGGCTCTTCAGCGCtgg
>TCONS_00012246
TTTGCTGGTGTCCAAATTCTCCTCAATATGAAGTGTCCAAACTACACTGAGGATTCCACGGTTTTATGCCACATGGAGAAGACTGAAACAGACCTGGGTGAGGTGAAGGGCCATAAGGTTTCGCCACGAAAAACAGGAGCCCTCCCCCTGCGCTCCCCCGCAGCCACCAATGTCTCCACACCTCTGGAGAGCCGAAGCAAAGGCCCCCATAATAAAGAAAACTACCAGAACAAGAGACATTCACTGGATATGGCATCAGATGATGAGgTGATCTTCAGTGGCAGCGGCCTGACCGAAGACAGCGGTTACCTTTCCCTCCATAACAGCCAGGTGGACGTGGACGGACTGGACTCATTAGAGAGGAGTGAAGAGAATTGTGTGTCCTCTCAATCCTTGGACGTTGAGTGTCATTCTGGACCCTGTTTACCTGTGCTGAACTTCCAGGAGGAGGCCTGCCGAGAGCTGCAGAGGAGCTACAAGAAGAACCGAAGCTACGATTGGACCGTCGTCGATAAAGTGGCGGAGAATTTTGGGTTGCATAATGTGATTGGTGGAAAAATGGGACGGCAGTTCGTGGATATCCTCTGCAAGCTGATGAGGAAGGACATGAGGCACATTCTTGCCAGGATTTTGGGCCTGCTGGGAGATTGTGACTTGATAAGCTGTACGAAAGTAAGCCGGACGTGGAGGAAAATAATTTGTCAGGATCAGTTGGCTCTTCAGCGCtggaaaaaagcagaaaaaacacGCAGGGACTCGGGCCGGTCTATGGGATCTTTATCTCGAGACTTCACCTTGGACAGGGTGGTGTTCTCCTGCATGCAGACCGTTTCCTCTCCACCCGCTCACAAGGCTGTTAAGAAGCCGCCATGCCAGATGGGTGGAGCGCAAAATGCGACTAAATCAAGCCGGTTTCAACAGTATGTAGAGGCAGCACAGTCTCTGAAACAGCATGAATCCCTGCGGCGCTGCTCCCGCTGCAGTTCTCCGGCACGCTTTGATGCAGTAATGCAGAGGGCCGTTTGCACACGCATCAGCTGCGCCTTTGAGTTTTGCACATTGTGTCAATCTGCTTTCCATGACTCCACTCCGTGCCGAAACACCATCCGGAGTTTTTCCTCCACACAAAAAACACTGGTTGCCGGCTCCGCTCGAAGCAAGAGGAGCATCCGTCGCCTCTGAGCGCCACATAAGAGGAAAAAAAAGCAATGTTAcaagaactttaaaaaaaaaactacctgtTGGGTTCTTAATCGATTTAAAAGACTTTTAAACATGTGAATATTTTATCTTCCAGAATGTGAAGTGAATTTTGGCCACGTGTGTGGTCACCGCACAGAGTgagagaaggagaaaaaaaaaagaaaagaaaatacaatcCTGTATGCCAAAAGAAAAGACTTGAAGGAGGTCAAACAGCCTCTCAAGGTTTTGTAAATGCTGTTTTATaagattttataaatgttttatcaatgaAATGAAGCATTGCTGTTTgtcttaatgtaaatatttaaatggttGAATAAAgcctatgtatatttttaatctttGGTTCTTTTCTCTATATAATTGAGCtatttttaaagggacagttcacccaaaaatgaatattgtgccaaaaaaagcatgtttgagtttctatcttctgtcaaacacaacatattttgcagaatgctggttgatggcacccattgacttccattgtagttgttcctgctatggaagtcaatgagtgccagcaaccagcagAAAGAAACTCCTAGATGTTTAAACCACATAACTGAGAGTAAAAGGAagtcaatacaattttttttattttttttattttatttaataaagccttgattatttttaatctttGGTTCTTTTCTCaatatatttgagtttttttttttttttttttttttttttttttttttaaagggatagttcaccccaaaatgattattgtgccaaaaaaaaaacgtcttgagtttctatcttctgtcaaacacaaaagaagatagtttaaaGGATGCTTGTTGCTGGCacccattaacttccattgtaGTTGTTCctgctatgaaagtcaatgggtgccagaaactagcagaaagaaactcctaaatgTTTAAACCACACGACTGACAGTAAATgaagtaatttttaatttttagttgAATAAAGCCTTGTCTATTTTTAATCTTCATGGcacccattgacatccatagcaggaaaaactacaatggaagtcaatgggtgccagcaactatagcagaaagaaactcctaaatgTTTAAACCACATGACGGAGAGTAAATGAAGTGAATTCTATTTTTGGTTTATTAAAGCCTTGTATATTTATAATCTTTGGTTCTTGTCTCGATAATTGAGCTCCTTTAAAAGGGATTGTTCGCCCCAAAATTTTATTGTGCTGGAAAACCATGTTTGAAATtctctcttctgttaaacacaaaagaatacaTCTTGATGAATGCTGGTTGccggcacccattgacttccatagtatcctttttgtttttgtttttttttaccaagtcAGTGGGGTGCCAACAACAAGCAGAAAGAAACTCCTATATGTTTAAACCACACGACGGAgtgtaaataaagtaattttttatttttggttaaataaagctttgtatatttttaatattgatggcacccattgacatccatagcaggaaaaactacaatggaagtcaatgggtgccagcaactaTAGCAGAAAAATACTCCTAAATGTTTAAACCACATGACGGAGATTAAGGCCcggtttacactaatgcgttttcattttaaaatgcgtaagttttgctacggttatgctattcatccacactacgccggagttctcgggtgcgagaggccgttttcattctgagacgctgctgctccgtctcagtgtggatgagcaaaaacggagacatctgaaaacggaggcgggactgctgagattcgctacctgattggggcttttgtgtcattgcgtatccttcccttattggtcaagcctctatcacatgactataacacatggctttaatgctACCGGAAGAcggtactgtaaacaacaacatggacacagaaatgggagcgttgtttggaCTATtatctgttttaggcgccattgtgcagttattcatttgttacgtttagtaacaactcaacctcgtcgtctgtccacaaaaacacctctcttgctttctttgccatcgcgtttaatgtttgAACagtgtttgttgactaacaataaccaaatgccgagcgagacgcatgcgttctgtttatactagaacgcgcatgcccagagtgcgagaatggtcacgtgatatacgtttttggtggcgtagtgtggacgaagATATGGGCGCTAggtaaaacgcaagtgtggacgcggatcgtttttgatttAAAACGCTGTTTAAActcactagtgtaaacggggcctaaatgaAGTGATTTCTATGTTTGGTTGAATAAAGccttgtttcaagagttcacacttagctgatgatttataaaagcttgtttggcatgctgtcccgggagagagccccgagctcaaggggtCCTCgagcttcctcccgttggcagaccgagaggggagcctgagctcggtggatctcagaactcccctgctgcggtagctaagggaacacaagggattagacaaagcttgattgttatgtatgttgaatgtctttggatggtgggaggaaactggaaaacccacgcggacacggggagaacatacaaactcctcacagaaacacccaccggtcctgtggaaccagggctggcagtgttcttgctgtggggctcacagtgctaatcactgggccgccgtgccgcccaatcagaggtaaaggaggagaataggggaggagggggggtttcttccaaacgaagataaagtgaactgaaaactgtggctctttatagtagcttagggctcatatgattggaagatagcgattagcaaatgcgagaccggacgtgataaatcataagcacgtgatcctctcgaaattagtctaTGAATAAACTTTACATATTTTAATCCTTGGTTCTTTTGTCGTCTCGCTATAACTGCCTTTTtaaaaaggaatagttcacccgaaaatttAAATTGTCCCAAATAATTGGTTGAgtttgaacactaaagaagatatttttaagaagaaCTGGTGGCacctgttgacttccatagtatcctTTTcttacagtggaagtcaatgaggACCAGCAACcagcagaaagaaactcataaatttTTAAACCACATGACTGAGAGTAAATGAAGTCATTTCTATTTTTGGTTGATCAAAgccttaaatatttttaataataataataaaaaaacatggttAAGTTTTTTATCTTCTGTCAAACACTAAATATATTTAGacgaatgctggttgctggcatccCTTGATTTCCATATCCtgtttttactatggaagtcaatgggtgccagtaaccagcagaaaaaaaactcataaaggtttaaatccCACATGATggagattattcattcattcattttcttgtcggcttagtccctttattaatccgggggcgccacagcgtaatgaaccgccaacttatccagcaagtttttatgcagcggatgcccttccagccgcaacccatctctgggaaacattcacacacacacttattcactacggactatttagcctacccaatacacctgtaccgcatgtctttggactgtggagaaaccggagcaccctgaggaaacccaggcgaacgcagggagaacatgcaaactccacacagaaacgccaactgagccgaggctcgaaccagcgaccttcttgctgtgaggcgacggagATTAAACAAAGTGATTTCTGTTTTTGGTTAAATAAAGCCTTGAATATTTTTAATCTGGTTCTTTTGTCGTCTCGTTATAACTGACcttttgaaaagttttttaaagagatagttcaccaaaaaataataaaaatatttgacatgtttgagtttctatcttctgtcgaacacaaaagaagatattttgaagaatgctgattgaaggtacccattgacttccattgtagttGTTCCTGatattgaagtcaatgggtgccagcaaccagcagaaagaaactcctaaagcTTTAAATCCCA

Function

symbol description
fbxo5 Predicted to enable ubiquitin ligase inhibitor activity. Acts upstream of or within several processes, including hemopoiesis; mitotic cytokinesis; and negative regulation of mitotic nuclear division. Predicted to be located in cytoplasm and spindle. Predicted to be active in nucleus. Is expressed in several structures, including alar plate midbrain region; blood; nervous system; optic vesicle; and segmental plate. Orthologous to human FBXO5 (F-box protein 5).

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0051726 regulation of cell cycle biological_process
GO:0045835 negative regulation of meiotic nuclear division biological_process
GO:0045839 negative regulation of mitotic nuclear division biological_process
GO:0007049 cell cycle biological_process
GO:0016567 protein ubiquitination biological_process
GO:0007346 regulation of mitotic cell cycle biological_process
GO:0051276 chromosome organization biological_process
GO:0051301 cell division biological_process
GO:0007088 regulation of mitotic nuclear division biological_process
GO:1904667 negative regulation of ubiquitin protein ligase activity biological_process
GO:0000278 mitotic cell cycle biological_process
GO:0000281 mitotic cytokinesis biological_process
GO:0005819 spindle cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:1990948 ubiquitin ligase inhibitor activity molecular_function

KEGG:

id description
ko04114 Oocyte meiosis
ko04121 Ubiquitin system
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-030131-4027 Predicted to enable ubiquitin ligase inhibitor activity. Acts upstream of or within several processes, including hemopoiesis; mitotic cytokinesis; and negative regulation of mitotic nuclear division. Predicted to be located in cytoplasm and spindle. Predicted to be active in nucleus. Is expressed in several structures, including alar plate midbrain region; blood; nervous system; optic vesicle; and segmental plate. Orthologous to human FBXO5 (F-box protein 5).

Ensembl:

ensembl_id ENSDARG00000039020

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012244 False 1716 mRNA 0.47 6 46941930 46955187
TCONS_00012245 False 831 nonsense_mediated_decay 0.49 5 46941931 46950484
TCONS_00012246 True 5160 mRNA 0.42 5 46944607 46958802

Neighbor

gene id symbol gene type direction distance location
XLOC_006244 mtrf1l coding upstream 4873 46927350 ~ 46937057 (+)
XLOC_006243 CU695232.1 coding upstream 123303 46803979 ~ 46818627 (+)
XLOC_006242 tmem63ba coding upstream 145910 46718518 ~ 46796020 (+)
XLOC_006241 CABZ01022272.1 coding upstream 714101 46227713 ~ 46227829 (+)
XLOC_006240 marcksl1a coding upstream 761420 46177478 ~ 46180510 (+)
XLOC_006246 NA coding downstream 27945 46986747 ~ 46987182 (+)
XLOC_006247 anapc1 coding downstream 48273 47007075 ~ 47178279 (+)
XLOC_006248 CR847786.1 coding downstream 91110 47049912 ~ 47050026 (+)
XLOC_006249 NA coding downstream 230332 47189134 ~ 47453908 (+)
XLOC_006250 NA coding downstream 268434 47227236 ~ 47229296 (+)
XLOC_006237 BX936305.2 non-coding upstream 983462 45942158 ~ 45958468 (+)
XLOC_006236 NA non-coding upstream 1010394 45931157 ~ 45931536 (+)
XLOC_006235 NA non-coding upstream 1064960 45871425 ~ 45876970 (+)
XLOC_006234 BX914200.1 non-coding upstream 1097991 45840427 ~ 45843939 (+)
XLOC_006251 NA non-coding downstream 395160 47353962 ~ 47361276 (+)

Expression


Co-expression Network