XLOC_006246


Basic Information

Item Value
gene id XLOC_006246
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 46986747 ~ 46987182 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013424
tttgtgttcaacagaaaaaagaattaaagggatagttcacaaaaaatgataactctgtcatcatttactcatcctcatgtgtttataaacacaaaagaagatatttcgaaaaaggttggaaacctgtaaccattgacttccataatatttgtttttctacaaTGAATTTatatcaatggttactggttttctttcgtgtttaacagaaaaagaattaaaggtatagttcacctccaaaaatgataattctgtcatcattttctcatcctcaagtggttataaacacaaaagaagacatttaaaagaatgttggaaacctgtaaccattgatttccattgttTTTCTACTATGAGTGTGTCAATGGTAaccatttttcttttgttttcaacagaaaaaggaattaaagggatagttcacccaaaaaagaaaagtctg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013424 True 436 lncRNA 0.30 1 46986747 46987182

Neighbor

gene id symbol gene type direction distance location
XLOC_006245 fbxo5 coding upstream 27945 46941930 ~ 46958802 (+)
XLOC_006244 mtrf1l coding upstream 49690 46927350 ~ 46937057 (+)
XLOC_006243 CU695232.1 coding upstream 168120 46803979 ~ 46818627 (+)
XLOC_006242 tmem63ba coding upstream 190727 46718518 ~ 46796020 (+)
XLOC_006241 CABZ01022272.1 coding upstream 758918 46227713 ~ 46227829 (+)
XLOC_006247 anapc1 coding downstream 19893 47007075 ~ 47178279 (+)
XLOC_006248 CR847786.1 coding downstream 62730 47049912 ~ 47050026 (+)
XLOC_006249 NA coding downstream 201952 47189134 ~ 47453908 (+)
XLOC_006250 NA coding downstream 240054 47227236 ~ 47229296 (+)
XLOC_006251 NA coding downstream 366780 47353962 ~ 47361276 (+)
XLOC_006237 BX936305.2 non-coding upstream 1028279 45942158 ~ 45958468 (+)
XLOC_006236 NA non-coding upstream 1055211 45931157 ~ 45931536 (+)
XLOC_006235 NA non-coding upstream 1109777 45871425 ~ 45876970 (+)
XLOC_006234 BX914200.1 non-coding upstream 1142808 45840427 ~ 45843939 (+)
XLOC_006257 AL772263.1 non-coding downstream 916886 47904068 ~ 47904182 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G419402 NA non-coding CI01000304 null 2067243 ~ 2067756 (-)
striped catfish (Pangasianodon hypophthalmus) G406098 sp1 non-coding NC_047624.1 CM018570.1 36138 ~ 36975 (+)