XLOC_006250


Basic Information

Item Value
gene id XLOC_006250
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 47227236 ~ 47229296 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013682
CAAAAAAAACTCACACGTTTGGcctcttgttgttgttttaactTTCACTTCATCATCTAAAAATAATCATGAACTTACTCCACCAACACTcacaaaaatgatgtttgctgcttgttcaaattagtcaaattgagctgaaacaacacaattcctacaCATTCTGCTAAGTATCTCATTTTGTTATCCaccaaaaaacacatttatttcgGTTTGAAATTGCACGattagtgagtaaataatgacagtatCATTTAGCTGACCTAGTTTAGTGTTTAGTATCATTCAAATGTTTGAagtcagtaagatttttttattattattttattttttacaaatacacagtttttaaaagcacattttgatCGTTTTGGCGCTTGACTGCCCTGAATCACTGTTATGTTTATAAAAATGTGCAGCTTTGACATTCTGCTGAGTATCTCATTTTGTTATCCaccaaaaaacacatttatttaggtTTGAATTTGCACAattagtgagtaaataatgacagtatCTTTTAGTTAACCTAGTCAAGTATTTACATTCAAATGTTTAAAgccagtaagatttttttttacaaatacactgttttttaaagcacattttgatCTATTTGGTGCTTGACTGCAGTTATTCactgttatttttaatttatttttttaaatgtgcagctTTGACATTCTGCTAAATATCTCATTTTATTATCCAACAAAAAACTTGTTTATTTAGGTTTGAAACAGCACGAGGAGTATATAGTGACAATATCATTGAGCTAATCTAGTTTAGTATTTACTATCATTCACATGTTTCATGTTTCATTCAAATTTgccattaagatttttttttttttttttaccaatacacagtttttaaaagcacattttgatCGTTTTGGTGCTTGTCTGCCCTGAATcactgctatttaaaaaaaaaatgctgcttggaCTTTCTGCTAGGTATCTCATTTTGTTATCCACCAAAAAACACGTTTATTTATGTTTGAAACAGCACGAGGAGTCAGTGCAATGAAGTcagtgggatttttttttttttttttttacaaatacagtttttaaaagcacattttgatatttttggtGCTTGACTGCCCTGATTTATTCTCAATGTATAAAAATGTGCAGCTTAGACATTCTGCTAAGTATCTCATTTTGTTACCCactaaaaaacacatttatttaggtTTGAAATAGCACGaggagtgagtaaataatgacagtatCATTGAGCTAATCTAGTCAGGTGTTTACTACCATTCAAATGTTTGAAGTCAGTaagatttttacaaatatatttaaaaatagatccaagactgcatttattcgAGAAACTTTTTAAGCTTTTATtgcaatttattaaacaaatttataGTGATATTTAAGTTATTAAAAGCTGGATCATTACTGCGGTCCTCAGTGtgatgatctttcagaaatcattttaatatgtttgtttgctgCTCAGGaatcatttgttattattttcgATGTTGAAAACAGTTCAAAGGAAAACATGCGATGTGTTTTTGCTCAGGACTCTTTGATGAATAGGAACAGTGCttatttgaaatataaatctttttgcaac

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013682 True 1605 lncRNA 0.30 2 47227236 47229296

Neighbor

gene id symbol gene type direction distance location
XLOC_006247 anapc1 coding upstream 48957 47007075 ~ 47178279 (+)
XLOC_006248 CR847786.1 coding upstream 177210 47049912 ~ 47050026 (+)
XLOC_006246 NA coding upstream 240054 46986747 ~ 46987182 (+)
XLOC_006245 fbxo5 coding upstream 268434 46941930 ~ 46958802 (+)
XLOC_006244 mtrf1l coding upstream 290179 46927350 ~ 46937057 (+)
XLOC_006251 NA coding downstream 124666 47353962 ~ 47361276 (+)
XLOC_006252 lhcgr coding downstream 344109 47573405 ~ 47618847 (+)
XLOC_006253 mertka coding downstream 394620 47623916 ~ 47691710 (+)
XLOC_006254 TMEM87B coding downstream 481138 47710434 ~ 47727611 (+)
XLOC_006255 zmp:0000001006 coding downstream 580915 47810211 ~ 47816048 (+)
XLOC_006241 CABZ01022272.1 non-coding upstream 999407 46227713 ~ 46227829 (+)
XLOC_006237 BX936305.2 non-coding upstream 1268768 45942158 ~ 45958468 (+)
XLOC_006236 NA non-coding upstream 1295700 45931157 ~ 45931536 (+)
XLOC_006257 AL772263.1 non-coding downstream 674772 47904068 ~ 47904182 (+)
XLOC_006258 CU986283.1 non-coding downstream 816816 48046112 ~ 48046228 (+)
XLOC_006259 NA non-coding downstream 833829 48063125 ~ 48064309 (+)
XLOC_006262 NA non-coding downstream 1323410 48552706 ~ 48556760 (+)

Expression


Co-expression Network