XLOC_000063 (cpo)


Basic Information

Item Value
gene id XLOC_000063
gene name cpo
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 5576151 ~ 5587575 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000124
ATGATCACTTTATAAGTCAGGCTTATTCAACTTCATGCAGTCAGTTTGAGGAATTGAGGATAACCAAAGAATGATGCAGGCCTCAATCACATCCATTTTGGTGGTTTTGACACTAGTTGCCCAAGACAGATTGGCTGGTGGGCTGGAGCACAAATCTTATGACTACACAAAGTACCATACCATGGATGAGATATCAGCCTGGATGAATCAGATGCAAAGGGAAAACCCAGATGTTGTGTCCACCATGACATATGGACAAACATATGAGAAGAGGAACATTACATTACTAAAGATTGGCTTCAGCAGTACCACACCAAAGAAAGCCATTTGGATGGACTGTGGGATTCATGCCAGGGAATGGATCGCTCCAGCTTTCTGCCAGCATTTTGTTAAAGAGgtCTTGGGCTCCTACAAAACAGACTCGAGGGTTAACATGTTGTTTAAGAACCTGGATTTTTACATCACCCCGGTGCTCAACATGGACGGATATATTTATTCCTGGCTGAATAACTCAACTAGACTATGGAGGAAGTCTAGATCACCATGCCATGAAAACTCTACATGCTCTGGCACCGATCTCAATCGCAACTTTTATGCAAATTGGGGAATGGTCGGGATCTCCAGAAACTGCTGTTCGGAGGTTTATAACGGTGCGACAGCTCTTTCTGAGCCCGAGGCCGAAGCCGTGACTGATTTTTTGGGAGCTCATCAGAATCATCTGCTCTGTTATCTCACCATCCACTCATACGGTCAGCTGATCCTCGTCCCCTACGGACACCCCAACATCTCTGCGCCCAATTACGACGAGCTGATGGAGGTCGGTCTCGCTGCGGCTAAAGCCATCAAAGCGGTACATGGGAAAAGCTACAAAGTGGGCAGTTCTCCTGACGtgctgtATCCAAACTCGGGCTCGTCCCGTGATTTTGCGAGGCTCATCGGGATCCCGTATTCTTTCACCTTTGAGTTACGGGACGAAGGGCAGCACGGCTTTATTCTGCCAGAGGATCAAATCCAGCCTACCTGTCAAGAAGCGTACGAGGGCGCAATGTCCATCATAAACTACGTCCATGATAAGAACTTCAAAAACACAGCCATTACAGTCACTGCCACACTGTGGACGACTCTCATGGCCTTATGGATCTCCACCAGTCACGTGTTTTAAACTGATATTTGCTATATGGATTGTACCTACTGATTGTGAATGTATATGGATTGTATAAATTCAgtttggattttaaaaaaaatgattaattgaatTGTTGTGCGTTGAATTAATTTTTGAATGAATGCTTATTACTGTGTAAAAATATCTTGGTTTGACATTTTGTGTaatgcaaaaacattttaaagtctgtCTTCTGTTCCAATTTGCCATGTTTTATTTCCATATTTATATACAAGGTAGTATTAGTGGGagtatttttagtttgtttgatttagaagtgactacatttttttaaacaaaccatTAAAATCTGAATATgttttcaaatcaaatttaatgtCTTGTTTAATATGATTTTGTAACTTGTACACATTTTTGCACTTGGATTACTTTTGCTGTCTTATAAATCtgaattaaagttaatttttaagTCTCTAATGca

Function

symbol description
cpo Enables metallocarboxypeptidase activity. Predicted to be involved in proteolysis. Is anchored component of plasma membrane. Is expressed in intestinal epithelium. Orthologous to human CPO (carboxypeptidase O).

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0031225 anchored component of membrane cellular_component
GO:0005886 plasma membrane cellular_component
GO:0046658 anchored component of plasma membrane cellular_component
GO:0005615 extracellular space cellular_component
GO:0016020 membrane cellular_component
GO:0016324 apical plasma membrane cellular_component
GO:0004180 carboxypeptidase activity molecular_function
GO:0004181 metallocarboxypeptidase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008237 metallopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
ko01002 Peptidases and inhibitors

ZFIN:

id description
ZDB-GENE-070619-6 Enables metallocarboxypeptidase activity. Predicted to be involved in proteolysis. Is anchored component of plasma membrane. Is expressed in intestinal epithelium. Orthologous to human CPO (carboxypeptidase O).

Ensembl:

ensembl_id ENSDARG00000077688

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000124 True 1607 mRNA 0.41 9 5576151 5587575

Neighbor

gene id symbol gene type direction distance location
XLOC_000062 atic coding upstream 72021 5437390 ~ 5504130 (+)
XLOC_000061 stk16 coding upstream 141890 5422439 ~ 5434261 (+)
XLOC_000060 tuba8l2 coding upstream 157035 5402476 ~ 5419116 (+)
XLOC_000059 NA coding upstream 262556 5311479 ~ 5313595 (+)
XLOC_000058 spry2 coding upstream 298568 5273481 ~ 5277583 (+)
XLOC_000064 NA coding downstream 119395 5706970 ~ 5728684 (+)
XLOC_000065 NA coding downstream 207438 5795013 ~ 5799092 (+)
XLOC_000066 abcb6a coding downstream 547601 6135176 ~ 6158609 (+)
XLOC_000067 cnppd1 coding downstream 574355 6161930 ~ 6185532 (+)
XLOC_000068 retreg2 coding downstream 602374 6189949 ~ 6210718 (+)
XLOC_000057 NA non-coding upstream 545996 4901460 ~ 5030155 (+)
XLOC_000056 FO744838.1 non-coding upstream 895674 4598060 ~ 4680477 (+)
XLOC_000054 CABZ01063288.1 non-coding upstream 1816117 3759924 ~ 3760034 (+)
XLOC_000053 NA non-coding upstream 1855548 3718666 ~ 3720603 (+)
XLOC_000072 NA non-coding downstream 792303 6379878 ~ 6554470 (+)
XLOC_000073 NA non-coding downstream 810635 6398210 ~ 6403223 (+)
XLOC_000076 NA non-coding downstream 1077458 6665033 ~ 6668339 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000299_02813216_02818668 CPO coding CI01000299 null 2813141 ~ 2819096 (+)