CI01000000_01092471_01098757 (CTSF, CTSW)


Basic Information

Item Value
gene id CI01000000_01092471_01098757
gene name CTSF, CTSW
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 1092471 ~ 1098757 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000000_01092471_01098757.mRNA
GCTCGTAGTGAACTGCCGTGTGGAGCAACAAAACACTGCAGGCTTACGATCTAAAAACAAAAACCTGATAGATCGTCGCTGCTTTCTGTTCCAAGAGCTCGACAACATGTACTTTAACCGCGGTTACCCCGTGATCGCTTGCTGCGTCCTGGTCGCTTTGGTTCTGGGTATAGAAGATGGCCCAGATCGCCCGGTTATCGGAGCTCCGGGATCGCCGGTCCGTCTGTCGGAATCAGACCCGGGGGTTATGAAAGCAGTGAAATTTGCTGAGGAACGATATAATATGGGATCCAACACGATGCACATACGCCGTGTTAGCAAAATCCTTTCGGCCAGCAAACAGCTGGTGAAAGGTATTCGGTACAGTATTATGGTAGAGATTGGAAGCACTCAGTGTAAGAAATCCCTAGAGCTGAGCACTGTGGACAACTGTGATTTTTTCCAAGAGCCCCACAAACAGAAGACGGAGGTTTGTTTGTTTGAGGTTTGGGACATTCCCTGGGAAAGTAAATCCACCCTACTTAAACAGAAATGCGAGCCTGCGGTTTCAAAGGAGCTCAAAAAGGTTGCATCTGTACCCCTAACCCATGGCAAACCCATGAAGGAAACTGTGGAGCTTCTGACACTGTTTAAAAACTTTATGATCACATATAACCGAACATATAGCTCCCAAGAAGAGGCAGAGAAGCGTTTGCGCATTTTCCAGGAGAATATGAAAACAGCACAAACGCTACAATCCCTGGAACAGGGGTCAGCTGAGTATGGGGTCACCAAATTCAGTGACCTCACAGAGGATGAGTTCCGAATGATGTACCTGAACCCAATGCTGAGTCAGTGGACTTTGAAGAAGGAGATGAAACCAGCAACCCCGGCCAGTAAGGCCGCTCCTGACAGCTGGGACTGGAGGGACCACGGGGCGGTCAGCCCTGTAAAGAATCAGGGCATGTGTGGCTCTTGCTGGGCATTTTCTGTGACTGGAAACATCGAGGGACAGTGGTTCAAGAAAACTGGACAGCTGCTTTCCCTATCTGAGCAGGAATTAGTGGACTGCGATAGGCTGGACCAAGCATGTGGAGGTGGGCTGCCGTCTAACGCTTATGAAGCCATCGAGAAGCTTGGAGGTCTTGAGACAGAAACAGACTACAGCTACACAGGACACAAGCAGAGCTGTGATTTCTCTACAGGAAAGGTGGCTGCCTACATTAACAACTCTGTAGAGCTGCCCAACGATGAAAACGAGATTGCTGCTTGGTTGGCTGAGAATGGTCCAGTGTCTGCTGCCCTCAATGCTTTTGCCATGCAGTTCTACAGAAAGGGAGTGTCTCATCCTCTAAAAATCTTCTGCAACCCCTGGATGATTGATCATGCTGTGCTGCTTGTGGGATATGGACAACGTAATGGTGTTCCATTCTGGGCCATCAAGAACAGCTGGGGAGAGGACTATGGAGAGCAG

Function

symbol description
ctsf Predicted to enable cysteine-type endopeptidase activity. Predicted to be involved in proteolysis involved in cellular protein catabolic process. Predicted to act upstream of or within proteolysis. Predicted to be active in extracellular space and lysosome. Is expressed in mesoderm; nervous system; neural tube; solid lens vesicle; and ventral mesenchyme. Human ortholog(s) of this gene implicated in neuronal ceroid lipofuscinosis 13. Orthologous to human CTSF (cathepsin F).
ctsw Predicted to enable cysteine-type endopeptidase activity. Predicted to be involved in proteolysis involved in cellular protein catabolic process. Located in membrane.

GO:

id name namespace
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process

KEGG:

id description
K01373 CTSF; cathepsin F

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000000_01092471_01098757.mRNA True 1453 mRNA 0.49 13 1092471 1098757

Neighbor

gene id symbol gene type direction distance location
CI01000000_01039704_01041072 NA coding downstream 50753 1039375 ~ 1041718 (-)
CI01000000_00957794_00974051 HARS2.L, HARS coding downstream 118339 957600 ~ 974132 (-)
CI01000000_00921369_00931954 GFRA3 coding downstream 160517 921076 ~ 931954 (-)
CI01000000_00834650_00849542 BRD8 coding downstream 241684 834334 ~ 850787 (-)
CI01000000_00785276_00797955 NA coding downstream 294137 785254 ~ 798334 (-)
CI01000000_01146002_01147858 NA coding upstream 46276 1145033 ~ 1147858 (-)
CI01000000_01164660_01175113 HNRNPH1, HNRH1, HNRNPH1L coding upstream 65632 1164389 ~ 1175113 (-)
CI01000000_01182989_01185534 HNRNPAB, HNRNPABA coding upstream 83608 1182365 ~ 1185575 (-)
CI01000000_01188552_01195213 GNB2L1, GBLP, RACK1 coding upstream 89649 1188406 ~ 1195213 (-)
CI01000000_01357072_01359013 NA coding upstream 257954 1355476 ~ 1359013 (-)
G1038 NA non-coding downstream 8934 1083336 ~ 1083537 (-)
G1030 NA non-coding downstream 30821 1061375 ~ 1061650 (-)
G1029 NA non-coding downstream 31347 1060833 ~ 1061124 (-)
G1028 NA non-coding downstream 36664 1055588 ~ 1055807 (-)
G1027 NA non-coding downstream 43296 1048957 ~ 1049175 (-)
G1042 NA non-coding upstream 29331 1128088 ~ 1128464 (-)
G1048 NA non-coding upstream 110382 1209139 ~ 1209510 (-)
G1049 NA non-coding upstream 113094 1211851 ~ 1212207 (-)
G1051 NA non-coding upstream 119543 1218300 ~ 1218589 (-)
G1054 NA non-coding upstream 129434 1228191 ~ 1228435 (-)
CI01000000_00683745_00689383 NA other downstream 403018 682205 ~ 689610 (-)
G795 NA other downstream 934481 157542 ~ 157990 (-)
G1077 NA other upstream 233422 1332179 ~ 1351178 (-)
G1270 NA other upstream 825324 1924081 ~ 1978336 (-)
CI01000000_03172562_03175863 HIGD2A other upstream 2071634 3170391 ~ 3175863 (-)
CI01000000_03245643_03246684 NA other upstream 2146377 3245134 ~ 3246721 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location