G1048


Basic Information

Item Value
gene id G1048
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 1209139 ~ 1209510 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU1216
AATGGATTCCCGAAGTTCCTGTGAAACAGAGACGTCCACAGATGACTCTTGACAGATGTCACTCATCTTTATCTCCAGCGCGCGCAGCCTGCTCTCCATCTGATGCGTTTTAAAAGTCATGAGAAAGCACACCGCTATTGAACTCAGCGATATCACTAAACACACTATGGTTGGAAAAGACACTAAATAGCGCAGATAAAGCGGTTTCGCAGCATTCTGTTTGCTTTCTGTATTTCTTTCCGCAGATGGATCCATTCTGACAAAGTATCCGATTAGTTTCCAATAGTTATATCACTTAAGTATCGATCAGTTCTTGATCGATGAGATGTAGCTGTCAGACTGAGCAGCGCTGAACAGCACACAGGGCTTTGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU1216 True 372 lncRNA 0.42 1 1209139 1209510

Neighbor

gene id symbol gene type direction distance location
CI01000000_01188552_01195213 GNB2L1, GBLP, RACK1 coding downstream 13926 1188406 ~ 1195213 (-)
CI01000000_01182989_01185534 HNRNPAB, HNRNPABA coding downstream 23564 1182365 ~ 1185575 (-)
CI01000000_01164660_01175113 HNRNPH1, HNRH1, HNRNPH1L coding downstream 34026 1164389 ~ 1175113 (-)
CI01000000_01146002_01147858 NA coding downstream 61281 1145033 ~ 1147858 (-)
CI01000000_01092471_01098757 CTSF, CTSW coding downstream 110382 1092471 ~ 1098757 (-)
CI01000000_01357072_01359013 NA coding upstream 147201 1355476 ~ 1359013 (-)
CI01000000_01363054_01377844 ADAM19B coding upstream 152585 1362095 ~ 1377844 (-)
CI01000000_01400145_01404700 NA coding upstream 190567 1400077 ~ 1404700 (-)
CI01000000_01411979_01443908 ABCA1B coding upstream 201794 1411304 ~ 1443908 (-)
CI01000000_01489740_01508942 TBC1D2 coding upstream 279553 1489063 ~ 1509629 (-)
G1042 NA non-coding downstream 80675 1128088 ~ 1128464 (-)
G1038 NA non-coding downstream 125602 1083336 ~ 1083537 (-)
G1030 NA non-coding downstream 147489 1061375 ~ 1061650 (-)
G1029 NA non-coding downstream 148015 1060833 ~ 1061124 (-)
G1028 NA non-coding downstream 153332 1055588 ~ 1055807 (-)
G1049 NA non-coding upstream 2341 1211851 ~ 1212207 (-)
G1051 NA non-coding upstream 8790 1218300 ~ 1218589 (-)
G1054 NA non-coding upstream 18681 1228191 ~ 1228435 (-)
G1055 NA non-coding upstream 19207 1228717 ~ 1228925 (-)
G1056 NA non-coding upstream 21103 1230613 ~ 1230819 (-)
CI01000000_00683745_00689383 NA other downstream 519686 682205 ~ 689610 (-)
G795 NA other downstream 1051149 157542 ~ 157990 (-)
G1077 NA other upstream 122669 1332179 ~ 1351178 (-)
G1270 NA other upstream 714571 1924081 ~ 1978336 (-)
CI01000000_03172562_03175863 HIGD2A other upstream 1960881 3170391 ~ 3175863 (-)
CI01000000_03245643_03246684 NA other upstream 2035624 3245134 ~ 3246721 (-)

Expression


Co-expression Network