CI01000000_01411979_01443908 (ABCA1B)


Basic Information

Item Value
gene id CI01000000_01411979_01443908
gene name ABCA1B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 1411304 ~ 1443908 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000000_01411979_01443908.mRNA
CTCCAGCTGCTGACGGAGATTGTGTGGCCTCTCTTTATTTTCTTCATCCTGATCGCCGTGAGGTTGAATTACCCACCTTACGAACAACATGAATGTCACTTTCCAAACAAAGCCATGCCCTCAGCAGGCACCCTGCCCTGGATCCAGGGCATTGTCTGCAATGCCAACAATCCGTGTTTCCGACACCCAACCCCTGGGGAATCTCCGGGAGTCGTTGGGAACTTCAATGATTCCATAATCTCACGCCTGTTTTCTGATGCCAAGAAGATCTTACTTTACAGTCAAAATGACAACAGCTTAGATGGATTCAAGGAGCTTATCAGTGCAGTAAAAATCATGCAAAATAACACAGCTGCACAGAAGGAAGACATGGAGACAGTTGGGCTGCTCTGGGTGAGGGTTATGGCAGGTTTCAAGCTGAAGGACTTCCTGCGTGAAAACGAGACTCTCTCAACGTTCCTCCAGCAAAATGCCTCATTCTCCCAGAATTTTGTGAAGAATATTCTGGAAGCTGATGTGAATCTTGAAAAGGTACTGATCAAAGGTTTTGGCGTCCATCTGAGAGATATGTGCAGCTCCACCACACTTGAGGACTTTGTGACCATCTCAGACAAAGGGGTGGCGGGATTCACCCAGGACATCATCTGCACGTCTCCAAATAGCTGGCTAGACCAGGCCGAAAGACACTTCAAGTCCAACCTGGATTTCCTCAAACCTATCAGGTTGGCCAGCATGAGGAGCTGGAGTGATCTGCGAAATGAGATCCTGTTTCTGACCAAAAACGCCACCGGCTCACCAAGCCTGATGTACCAGGCTGTGTCCCGTATTGTGTGTGGTCACCCAGAAGGCGGTGGACTAAAGATCAAATCCCTCAACTGGTACGAGGACAGCAATTTCCAGGCGCTGTTCGGCAGCCACAATGACAGCGATGACGAACCGGTCAATAAGACTTTTCAGGAGCTTGGAATTCTACGAGATTTAGGAGGAATGTGGGAAGAAGCCAGACCAAAGTTTTGGAACTTCATGGAGAACAGTGAAGAAATGGATCTGATGCGGACGCTTCTTCGAAACAATGCCACTGCTAGTTTCTTTAGTGCCCAGTTGGCTGGGACTCAGTGGAACGTGGAGGATGTTATCAGTTTCTTGTCTAAGCACTCTGAGGATACACGTCCCCATGGAACAGCATTTACGTGGCGGGATGTCTTCAATGAGACGGACCAGGCCATTATGAGCATATCCCGTTTCATGGAGTGTGTAAACTTGGATAAACTTGAACCTGTAAGCACAGAGGAGAAACTGGTGAACGAGTCCATGAGTCTCCTGGATAACAGAAAGTTCTGGGCGGGAATTGTGTTCCTGGACGTACAGCCCAACAGCTCAGAACTTCCACCACACGTCAATTACAAGATCCGAATGGACATCGACAACGTGGAGCGCACAAACAAGATTAAAGATGGGTATTGGGATCCTGGTCCCAGGGCTGATCCCTTTGAGGATTTGCGGTATATTTGGGGAGGATTTACTTACCTTCAGGATGTAGTTGAACACAGCATCATCAGAGCAATTACTGGGACCAAAGAGAAGACTGGTGTTTATATCCAACAGATGCCTTATCCATGTTATGTAGATGATATTTTCCTTCGCATTATGAGCCGCTCCATGCCTCTCTTCATGACTCTGGCCTGGATGTATTCGGTGGCCATCATCATCAAAGGCGTTGTCTACGAGAAGGAGGCCCGACTCAAGGAGACCATGAGGATTATGGGACTGGACAATGGAATCCTGTGGTTCAGCTGGTTCATCAGCAGCCTCATTCCTCTTCTCATCAGTGCAGGCCTGCTGGTTCTTCTACTCAAGATGGGAAATCTCCTGCCCTATAGTGACCCTGGCATAGTCTTTCTCTTCCTCGTGTCATTTGCTGTGGTAACCATCATGCAGTGTTTCCTGATCAGTACAGCGTTCGCACGTGCCAACCTGGCAGCAGCCTGCGGGGGCATTATCTACTTTACCCTCTACCTGCCTTATGTGCTGTGCGTGGCTTGGCAAGACTACGTGGGCTTCACCGCCAAAGTCATCGCTAGCTTACTGTCTCCAGTGGCATTTGGGTTTGGCTGTGAGTATTTTGCACTGTTTGAGGAGCAGGGTGTGGGCATCCAATGGTATAACCTCTTCTCCAGCCCCATGGAAGAGGACAACTACAACCTCACCACCTGCCTCATCCTCATGTACTTTGATGCCTTCCTGTATGGGGTCATGACCTGGTACATTGAGACCGTGTTCCCAGGGCAGTACGGCATTCCCAGGCCGTGGTACTTCCCCTTCACTAAATCTTACTGGTTTGGAGAGAACAGCACAAACAATACTGCAATACATGGAAAGAAGGGCAATGCTGGGGCTGTTTGCATTGAAGAGGAACCCACTCATCTTGAATTGGGAGTTTACATTGACAATCTTGTGAAGGTCTACAGTCACGGCAAAAAGCTAGCGGTCGATGGGTTGACACTTGGCTTCTATGAGGGGCAGATAACCTCGTTTCTAGGTCACAATGGAGCTGGAAAAACTACGACCATGTCTATCTTAACTGGCCTTTTCCCTCCCACCTCTGGCACTGCGTATATCATGGGCAAAGACATTCGCTCAGAGCTGAGTTCTATCAGGCAGAGCCTCGGAGTGTGTCCACAACACAACGTCCTCTTCAGCATGTTGACAGTAGAAGAGCACATCTGGTTCTACGCCCGTCTAAAGGGTCTGTCTGAGGAGAAAGTGAAGGCTGAGATGGAGCAGATCCTGACTGATACTGGCCTTCCACACAAACGCAAATCCAGGACCAGCCAGTTGTCAGGTGGTATGCAGAGGAAACTCTCTGTAGCCCTTGCTTTTGTTGGAGGGTCAAAGGTTGTCATTCTGGATGAGCCTACCGCTGGTGTGGATCCATACGCTCGTAGAGGCATCTGGGATCTTCTTCTGAAGTATCGTGCTGGTCGGACTATCCTTCTTTCCACCCATCATATGGATGAAGCAGACATTCTGGGTGATCGCATTGCCATCATCTCCCATGGAAAGCTTTGTTGTGTGGGCTCTTCGCTGTTTCTGAAAACTCAACTGGGAACCGGATACTATCTTACCTTGGTAAAGAAAAACAATGAACCTTCTCTCAGTTCTTGCAGGAACTCAAGCAGCACAGTGTCTTTCATTAAGAAAGATGACAATGCATCTGAGAGCAGTTCAGATGCTGGTCTTGGTAGCGACCAAGAGAGCGAAGCTGCCACAGCAATTGGAACTACTTGGCCTGAATCTCCTGTTGTTCCTGTTGATGTGGCCCTCATCTCCAGTCTAATCCTGAAGCATGTTCCCGCTTCCCGCATGGTGGAAGACCTTGGTCATGAGATCACATATGTGTTGCCGTATGAGTCTGCCAAAGATGGTGCTTTCGTTGAGCTCTTTCATGACCTGGATGATCGGCTCGCTGACCTTGGCATTTCGAGCTATGGTGTCTCAGATACTACACTTGAAGAGATTTTCCTTAAAGTGGCAGAGGACAGTGGAGTTGACACAGAAATCATCTCAGATGGAACTGTGCCAGTGCGTAGACATAGACAACATGCATTTGGCGGTGACCACCAGAGCTGCCTCAAACCCCTAACCGATGACGATGACTTTGAGTGCAACGAATCTGATGGTGATCCAGAATCCAAAGAGACAGACTATTTGAGCGTGTCTGATGGAAAAGGATCATATCAGGTGAAAGGCTGGAGTTTAAAGAGGCAGCAGTTTGTGGCGTTAATATGGAAGAGATTTCTTTATGCTCGCCGCTCAAGGAAAGGCTTCTTTGCACAGATTGTTCTTCCCGCTGTGTTTGTGTGCATCGCTCTGGTATTCAGTCTTATTGTGCCACCATTTGGGAAATATCCCAGCCTGGCTCTTAACCCCTGGATGTATGAAGAACAATTCACGTTCATTAGTGATGATGCTCCACATGATATAAGCACACAAAAATTACTCAACGCCTTATTAGATGATCCCGGCTTTGGAACGCGATGCATGGAAGGAGAACCAATTCCTGAGGCTCCCTGTACAATGGGCGATGAGGAATGGTCTACACCAGAAGTGGCAGAAAGCGTGATGGACATTTTCACAACGACAAACTGGACTATGGACAACCCATCGCCTGCTTGTGAGTGCAGCTGTAATGGCAAAAAGAAGATGCTCCCAGAATGCCCTGCCGGTGCTGGTGGACTGCCACCTCCTCAGATTAAGATCAGTGAAACTGAGACCCTCCAGAACCTGACAGGACGAAACATCTCAGACTATCTAGTGAAGACCTATGCACAGATCATTGGGAAAAGCTTAAAGAACAAGATCTGGGTGAACGAATTCAGATATGGAGGATTTTCATTGGGTGCTAGAAGCACTCAGGTACTTCCTCCTGCTGAGGAGGTCGATGATGCCATCTCTAGAGTCAGGGATATCTTCCAACTGGGGAAGGACTCAGGATCAGCGCCCGACCGTTTCTTGAAAAGCCTGTCTGCCTTCATCAATGGGCTGGACACTAAGAATAATGTCAAGATATGGTTCAATAACAAGGGCTGGCACAGTGTTGGAGCCTTTCTCAATGTAATGAACAATGGTATTTTGCGTGCCAACTTACCACCTGGCAAAGACCCCCGTCAGTTTGGCATCACTGCGTTCAACCATCCGCTCAATCTGACCAAAGAACAGCTTTCTCAAGTGGCCCTGATGACTACCTCAGTGGACGTGCTGGTTTCCATCTGTGTGATCTTCGCCATGTCCTTCGTTCCTGCCAGCTTTGTTGTCTTTCTCATTCAGGAACGAGTGAATAAGGCCAAGCATATGCAGTTTATCAGCGGAGTTCAGCCATACCTTTACTGGTTGGCCAACTTTCTCTGGGATATGTGTAATTATGTCGTTCCTGCTACTCTGGTGATCCTGATCTTTGTGTGCTTCCAACAAAAGGCCTATGTCTCCGCCACCAACTTGCCTGTTCTTGCTCTTCTGCTGCTTCTATATGGATGGTCCATCACTCCTCTTATGTACCCGGCTTCTTTCCTCTTCAAAATCCCCAGCACTGCTTATGTGGTTCTCACTAGTGTCAACATCCTTATTGGGATCAATGGCAGCGTGTCCACTTTTGTCATGGAGTTATTTGGAAATAATGAGATTGGTGGTATTAACGACATCCTGAAGAACGTTTTGCTCATCTTCCCGCACTTCTGCCTGGGTCGAGGTCTCATTGACATGGTGAAGAATCAGGCCATGGCTGACGCTCTAGAGAGATTTGGTGAGAACCGTTTCCGTTCTCCACTGGAGTGGGACATGGTGGGCAAGAATCTTTTTGCTATGGCTGTGGAAGGAGCGGTATTCTTCATCATCACAGTCCTTATCCAGTACCGTTTCTTCTTTGAACCCAAGTCTTTAAGTACCAAGTTGAGTCCGATTGGAGAGGAAGATGAGGATGTTGCCAGAGAGAGGCAGAGGATCATGAGTGGAGCTGGACAAGGAGACATTCTTGAACTTCGACAACTCACTAAGGTGTACAAGCGGAAACAGAAGCCCGCTGTCGATCGTCTATGTGTGGGAATTCCTCCAGGAGAGTGTTTTGGTCTGCTTGGTGTCAATGGAGCTGGAAAGACCAGCACTTTTAAAATGCTGACCGGAGACTCTGTGGTCAGCAAAGGAGAAGCATTCTTAGCTGGGAAAAGTATACTCAGAGAAATAGATGAAGTACATCAAAACATGGGCTACTGCCCTCAGTTTGATGCCATCAATGATCTGCTGACAGGACGGGAACACCTGGAATTCTACGCCATCCTTCGCGGTGTACCTGAGAAGGAAGTCTGTGAGGTGGCAGAGTGGGGAATCCGTAAGCTGGGTCTCGTGAAGTATGTGGACAAAAAGGCTGGAAGCTACAGCGGTGGCAACATGCGCAAACTCTCCACCGCCATATCACTCATTGGAGCCCCCCCAGTGGTCTTCCTGGACGAGCCCACCACTGGAATGGACCCCAAAGCACGACGAGCACTGTGGAACTGCATCCACAGCGTCATCAAAGAGGGACGCTCTGTCGTGCTTACCTCACACAGCATGGAAGAATGTGAAGCACTGTGCACCAGGATGGCCATCATGGTGAACGGCAGGTTCCGCTGTCTGGGTAGCGTCCAACACCTGAAGAACAGATTTGGTGATGGATACACCATCATTCTGCGGGTTGCAGGGCCAGATCCTGACCTGCAGCCGGTGATGAAGTTCATTGAGTACGAGCTGCCGGGCAGCACTCTGAAAGAGAAACACAGAAACATGCTACAATACCAGCTTTCCTCCTCCCTTACCTCCCTCGCTCACATCTTTAGCATCCTCGCTAAGAACAAGGAGTTTCTCAGGATAGAGGACTACTCCGTGTCCCAGACCACTCTGGACCAGGTATTTGTTAACTTTGCCAAGGACCAAAGTGACGACCACTCAGACAGCTCCATTCGTCGTAAAGAGACAGCGGTGAACATGGCCCTCCTGAGCCCTCTGTCTACTAAAGAGAACATGGAGAAGCCAATAGAAAGCTTTGTCTGAGCCAGAGTCTCTCTTTACATTACATGCTAACTGGAGCCAGTGGATTTCACTTGTTTCACAATGTTTTTGTGGCCTTTGAGCTGCAGTCTGCTGTTCTGACCTCTGCCTGAAGATAAAGGTCTTCACCGATCAGCTGAGAGGCAGATACTGCAATGCAAGTCAATGCAAAAGAAATTGAAAAGACTTCTCGTGTTTCTAGCATGGCTGAATTTGAACCGTGTTAGTCACAGTCTTAAACTTGAAGCCATCATTTCTGGTGTAGACTGCATGGACTATATTTTGCGCAGTCGTTGACAGAGATTGATTTTCATTGTGTGAGATAACTGGGCAGATGACAAAATGCCAATGATTAATAATTCAGGGTCAGTGTCTTTATATTTTATATTCTTAAGATTAGAAGACTGGGAATCACATGCTGAAGAATCATAATTGTTTGTGTGGCCAAGGGCTGAGCTGCAAAACTGCAAATTGTACTATGTTAAAATGATTTTGTTTTTAATATGTCTTTATTTATAAACCAGCAATTGTTTTAGATGTTTTAGAAAGGAGCATTATTTTATAGGATGTTCTATCCACGAGTGCCTCACATTATCTTCATACTGCCGATGCAAGTTAAGAATTTTTGTGCATGGAGAAAACAAGGTGATTGATTTTGTAGGGTTTTTTTTTAATAAA

Function

symbol description
abca1b Predicted to enable ATPase-coupled transmembrane transporter activity; phosphatidylcholine floppase activity; and phosphatidylserine floppase activity. Predicted to be involved in phospholipid efflux. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in intracellular membrane-bounded organelle. Is expressed in several structures, including hypochord; mesoderm; notochord; solid lens vesicle; and yolk syncytial layer. Human ortholog(s) of this gene implicated in Alzheimer's disease; coronary artery disease; hypolipoproteinemia (multiple); obesity; and type 2 diabetes mellitus. Orthologous to human ABCA1 (ATP binding cassette subfamily A member 1).

GO:

id name namespace
GO:0042626 ATPase-coupled transmembrane transporter activity molecular_function

KEGG:

id description
K05641 ABCA1; ATP-binding cassette, subfamily A (ABC1), member 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000000_01411979_01443908.mRNA True 7257 mRNA 0.48 44 1411304 1443908

Neighbor

gene id symbol gene type direction distance location
CI01000000_01400145_01404700 NA coding downstream 6604 1400077 ~ 1404700 (-)
CI01000000_01363054_01377844 ADAM19B coding downstream 33460 1362095 ~ 1377844 (-)
CI01000000_01357072_01359013 NA coding downstream 52291 1355476 ~ 1359013 (-)
CI01000000_01188552_01195213 GNB2L1, GBLP, RACK1 coding downstream 216091 1188406 ~ 1195213 (-)
CI01000000_01182989_01185534 HNRNPAB, HNRNPABA coding downstream 225729 1182365 ~ 1185575 (-)
CI01000000_01489740_01508942 TBC1D2 coding upstream 45155 1489063 ~ 1509629 (-)
CI01000000_01532051_01537246 SMU1.S, SMU1 coding upstream 88143 1532051 ~ 1538050 (-)
CI01000000_01802714_01804315 NA coding upstream 357862 1801770 ~ 1804315 (-)
CI01000000_01822466_01837458 NA coding upstream 378469 1822377 ~ 1837593 (-)
CI01000000_01837862_01840696 NA coding upstream 393758 1837666 ~ 1840696 (-)
G1095 NA non-coding downstream 50304 1360642 ~ 1361000 (-)
G1074 NA non-coding downstream 97922 1313130 ~ 1313382 (-)
G1071 NA non-coding downstream 124989 1285971 ~ 1286315 (-)
G1070 NA non-coding downstream 125611 1285385 ~ 1285693 (-)
G1060 NA non-coding downstream 161353 1249726 ~ 1249951 (-)
G1114 NA non-coding upstream 73185 1517093 ~ 1518726 (-)
G1131 NA non-coding upstream 126366 1570274 ~ 1570509 (-)
G1140 NA non-coding upstream 158871 1602779 ~ 1603007 (-)
G1125 NA non-coding upstream 186790 1630698 ~ 1631275 (-)
G1124 NA non-coding upstream 187819 1631727 ~ 1693643 (-)
G1077 NA other downstream 60126 1332179 ~ 1351178 (-)
CI01000000_00683745_00689383 NA other downstream 721851 682205 ~ 689610 (-)
G795 NA other downstream 1253314 157542 ~ 157990 (-)
G1270 NA other upstream 480173 1924081 ~ 1978336 (-)
CI01000000_03172562_03175863 HIGD2A other upstream 1726483 3170391 ~ 3175863 (-)
CI01000000_03245643_03246684 NA other upstream 1801226 3245134 ~ 3246721 (-)
CI01000000_03564077_03564373 NA other upstream 2122791 3562887 ~ 3567571 (-)
G2484 NA other upstream 2126158 3570066 ~ 3573554 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location