CI01000000_01822466_01837458


Basic Information

Item Value
gene id CI01000000_01822466_01837458
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 1822377 ~ 1837593 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000000_01822466_01837458.mRNA
ATTTAGCAAAAATGTTGCTTTGAGGATTTAAAAGAAGAATATTCAATGTTAAATTCAGTTTAAACTATAGTGACAGCATCTGTGGCCTGCTGTCAACAATCAAAATTTTGACACTCAGTTTGTTAAAAATAAAAAATGGGTACTTGGTGCAAATGTACAACACAAATAACAACAATTTTATACCGTGACCTGAAGTCAGAGGATCCAGCCAATAAGGAAGCAGGAGAGGAGAAAGCAGAGGAGGACAATGACTACCATCGCAGTGATGAGCAGGTGAGTATCTGTCTGGAATGTAACAGCAGTAAGCTCAGAGGACTCAAGCGGAAGTGGATTCGTTGTTCAGCTCAGGCGACCGTTCTCCACCTCAAGAAGTTCATCGCAAAGAAGCTCAACCTGACATCCTTCAATGAGCTGGACATCTTATGCAATGAAGAAATCTTGGGCAAGGACCATACTTTGAAATTTGTTGTGGTAACAAGATGGAGATTTAAGACCCAAAATGGATCTGCTGTAGTTGGACAAAAACGCTTGGTTGTTTTGGCCCAGTGGCTGAGGACTGTGCTACGTGCTATATATGCAGAGACCATCAACGCCCACACCAAACAAACAAATGCCCGTCAACACAGACACGAGCCAGCAAACAACAAAACCAGCACAGCCACTGCGACACTGGCGACTTACGGGAACAACCGCTTTTCTCTGTCTGTTTGTCCGCTATATGTCCTAGATATGTGAAAAATTGAGAGAAAGCATATATTTATACTTTTGTATAGATGAGAGAAGTGGAACCAAGACCCTATTGGTGCGCTGTTTACACTATTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000000_01822466_01837458.mRNA True 824 mRNA 0.42 5 1822377 1837593

Neighbor

gene id symbol gene type direction distance location
CI01000000_01802714_01804315 NA coding downstream 18062 1801770 ~ 1804315 (-)
CI01000000_01532051_01537246 SMU1.S, SMU1 coding downstream 284327 1532051 ~ 1538050 (-)
CI01000000_01489740_01508942 TBC1D2 coding downstream 312748 1489063 ~ 1509629 (-)
CI01000000_01411979_01443908 ABCA1B coding downstream 378469 1411304 ~ 1443908 (-)
CI01000000_01400145_01404700 NA coding downstream 417677 1400077 ~ 1404700 (-)
CI01000000_01837862_01840696 NA coding upstream 73 1837666 ~ 1840696 (-)
CI01000000_01881532_01883187 NA coding upstream 43275 1880868 ~ 1883187 (-)
CI01000000_01895666_01897365 NCBP1 coding upstream 57839 1895432 ~ 1897494 (-)
CI01000000_01904551_01911645 RPL26, RPL26L1, RL26 coding upstream 66934 1904527 ~ 1911645 (-)
CI01000000_01945147_01945563 NA coding upstream 107450 1945043 ~ 1946093 (-)
G1214 NA non-coding downstream 54870 1767286 ~ 1767507 (-)
G1205 NA non-coding downstream 66653 1755479 ~ 1755724 (-)
G1204 NA non-coding downstream 66999 1755093 ~ 1755378 (-)
G1197 NA non-coding downstream 73923 1748217 ~ 1748454 (-)
G1195 NA non-coding downstream 77205 1744948 ~ 1745172 (-)
G976 NA non-coding upstream 64112 1901705 ~ 1903606 (-)
G1254 NA non-coding upstream 71929 1909522 ~ 1909729 (-)
G1266 NA non-coding upstream 81536 1919129 ~ 1919375 (-)
G1269 NA non-coding upstream 122551 1960144 ~ 1981579 (-)
G1298 NA non-coding upstream 191299 2028892 ~ 2029188 (-)
CI01000000_01357072_01359013 NA other downstream 462439 1355476 ~ 1359013 (-)
G1077 NA other downstream 471199 1332179 ~ 1351178 (-)
CI01000000_00683745_00689383 NA other downstream 1132924 682205 ~ 689610 (-)
G795 NA other downstream 1664387 157542 ~ 157990 (-)
G1270 NA other upstream 86488 1924081 ~ 1978336 (-)
CI01000000_03172562_03175863 HIGD2A other upstream 1332798 3170391 ~ 3175863 (-)
CI01000000_03245643_03246684 NA other upstream 1407541 3245134 ~ 3246721 (-)
CI01000000_03564077_03564373 NA other upstream 1729106 3562887 ~ 3567571 (-)
G2484 NA other upstream 1732473 3570066 ~ 3573554 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) LOC110505071 LOC106611637 misc NC_050571.1 CM025858.1 34008192 ~ 34106811 (-)
bowfin (Amia calva) AMCG00017705 pcgf3,LOC106604628,LOC107697629,LOC107751329 coding CM030131.1 CM030131.1 18969596 ~ 18996932 (+)