CI01000000_01489740_01508942 (TBC1D2)


Basic Information

Item Value
gene id CI01000000_01489740_01508942
gene name TBC1D2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 1489063 ~ 1509629 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000000_01489740_01508942.mRNA
TTTCTGGAAACTGAAATGAGATAGCCTAGCTGTGTACTGTGCAATGCGTTTGAGAGTGGTATTTGCATGCCATACAATGTATAGTTCTCCATTTTTTTTTTTTTCTAAGTAGGATAAGATGGGGTAAGATGTCCCAAGATGACCTTAATATTTTTCTCTTGACCATATATATATAGGCTAATTGAGTTAAATCATTCAATTTGAATTCAGTGTTGCTATTATGACATATCTTCAATTAAAATATTGGCAGTTAATATATAGTATATAGTTATATATGTCATAGAATCAAGTTAACTTTCAAATTAATCTCTTTTACTGGGATTCTGCTTTGTCTCTCATTAGCTATTCACTTATTCATCTAAATTGTCAAATCACAATTTTAAACAGAATAGCTGATTTAGTATGTAACTTTAATGACTTATATATGATATATTTAATATTGCCTGATATATCAACATCCTGCACATACTAAGATTATATTTAAATATGTTTAATTTTTATGATGAATACACATTGTTCTTAAGCATCTTCCACCATCTTACCCTAATATTGATAGTTGTTCATTTAGTGTATTAGTAATAGTATAGTATACATATATTTTACTGAAGCTATGCTGATGGACATAATTTAATTACTCGGAGAACATTTTTTTCTGATGTCACTTATTCTCTTTGTTGAGATAACCAGATGGAGACCAAGGGAAGCTCCAGCACTCCACCTCCACCAGACTTGCACAAATCTCCAGCAGATGAGTGTGTCGGCGCTGAGGAGCCCCAACAGCAGAGTTTGGGCCAGTCAGATGGGTCACATGATAAAATGGACACCAATATCCATGCTGCTCAGCCTGATGGGACCTCTGCCATCTTCAGAAGGACACCCACTCAGTCCGGCACTAAACTATGTGGCTACCTCAACAAGCAGGGTGGACCTCTCAAAGCCTGGAAGTCCCGCTGGTTTGCCTACGAGGAGAAGAGCTGTCAGCTGTTTTACTACCGCATGGCACAGGATATCAATCCTCTGGGTAAGGTGGATCTGTCTCGTGCCACGTTCAGTTACCCGTTGCAGGGAGAGGAGGGAACCTTTCATATAAAGACACCAGAGCGCACTTTCGTTCTCAAGGCAGCTAACAGAGATGCGCAGATGTACTGGTTGCAACAGCTGCAGATGAAACGTGCGTTATACAGGGAGCAGCAAGTTGAACATCAGCCCATGCCAAAACCAGACAACCTAACAGTGGAAAGCACACCATCAGCAAACTGCCCTGCTGACTTCTTGCCCATGGTGAAGACGCCTTCTGGTCTGGTTGGTGAAGAAGCTGCCAGTCTGCCGGCACCAGGATTAAAAAGCCCCCTCAATATGTCAATCAAACATCCGCTAATTGAGCTACAGAACACAATGCACAGTTTCCGTAACCGGCAGTCACAAGAAATTAGACAAAGTGTTTTCCATATTGACGACCCAAATGTCACCCAAAAAACACTCTCATCTAAGACATCCACTTTAGCAGTCCCCACATCCGGTTCTTCTCAAACCCCAGAATTCCCTGTTAATGCCAAGTGTGAGGACCTGCAAAAAAATCATCTATCCACAGTGTCACAAAACAGGAAGGGTTACAAAGAAAAGTTCAAACCTCTGGACCTAGACACATCTCAACATGAAAAACTTTCCCTGGCTGAAGAGGTCAAAGCACAGAAGGAGTTGGTGTTGCTGCTACATAAAGTGCTGGAAGATGCTCAGCTAGAGAAACGTACCTGTGCTCAGTTTCTAGCTGCGGAGGGAGAGCAGGAGCGCTTGGAGCTCCTCAAACACGGTGAACGACGTGCAGCCGAATTGCGAGACCATCTGGAGTCACTGCAGCAGGAGAATGAGAGCCTACGGAGGGATCTGAACCAGAGGGACTCCCATATTGCTGAACTCCAAGAGAGTGTCAAGCTCTTGATGCACAAGAACCAGGCCAAACAGGAAGTGTTATTGAAGCTATCTGAGAAGTTAGCAGCCTGTGGGGAAGACCAGCATTACACCAATGGGCTGGAAACTGAGACCTTCAAACAGCTAACACTGGAGAATGAGCATTTGAAAGATGATTTGAAAGCATATAAAACCCAGAACCAGTATCTAAACTCTGAGATCTACCAGCTGACGACGCTTTGGAGAAAAAGTTCAGAACAGGAGCAAAGTCTGATAGTAAAGTGTGCTGTTTTAGAGGCCAATAACTGTCAGATGGAAAGCAGATACCTGGGAATCCTCCAGAAACTCCTGGAGAGTAAGGAATTGAATCCGGAGCAGAGGGAAGCAATCAAGAAGGTGATTAAAGATGCAGTTCAGGCAGATCTGAACACAGTCATCAAACTAAACCCCATCAGTGATTACGATGAATATGGATTTAGGATCGCAATAGACTACAAAGTTGAGGACCTGAAGCTCCTTTCTAAGATCCAGGCCCTGGAGATCCGATCCCAAAACCTGCTGAATCAAGAGGAATGTGATGGCCCGCTGTTGGCTCGTTGCGCTCAGCTCCTGTTCGGACGTCCTGAAGCTGAACTGTCTTCATCAGCAGAAATGAAGAGTCTACTCCGGACAGGCTTACCACGAGAGTACCGCGTGAAGTTTTGGCGTTTTATGATACAGACTAGAACCAAGTCAGTAAGGGGGCGTCATCCCAACCGCTATCAAGAGCTTTGCGAGAACAGCAGAACCTCACCGCACCTGGTGCCCAGACAGATCCAGCTGGACCTGGATCGTACGTTGACCTCCAATCAACTCTTTTCCCCTCCTTCAAGCCCCATGATTCAAAAGCTGGAGAGAGTTCTTCAAGCATTCTCATGGCAAAACCCCACCATCGGCTACGTGCAGGGACTCAACAGACTGGCAGCCATTGCTCTGCTGGTACTACAGGATGAGGAAGATGCCTTCTGGTGCCTGGTAGTGATTGTGGAGTACATCATGCCTCGCAATTACTACACTAAAGACCTGCTGGGCTGTCAGGCCGACCAGCGTGTACTAAAGGACCTCATGTTCGAGAAACTGCCTCGACTCACAGCCCATCTGGAAGCGCTAAAAGTAGACGTATCACTCATCACTGTTGAATGGTTCCTGGTGCTGTTCGTGGAGAGTCTGCCTACCCGCATACTGTTTAAAGTATGGGACGCCTTCCTGTATGAGGGCATCAAGGTGATATTCCGATATGCACTGGCTCTTTTCAAATACAAAGAGGAAGACATCTTAAAGATTCAAGACAGTGCCGAAATGTACCAGTATCTCCGCATCTTCCCAAACACCATTGTAGATGGAAGGAAGCTGACAAGCATTGCCTTCAATGACATGAACCCACTGCCCATGAAGCTACTGTGGAACCGTCGCGGCGTGCATCTGGAACGTCTCCACGCTGAGATTAAAGAGCTGGAGAACTTACAGAAAGCATACAAAGCTGAAAACGTCCAGTGCAAAGACAAAGAGCTGGACACCCTCGCTAGTGAAGATGAAGAGGAGGATACATATGAAATCATAAATATAAAAATCAAACAAATCAACAAAAACTTAGTTCAATGTTACAAACAACTTTACTGCAGGACTAGCGATGTCACAGCTGTTACTGAGATGTTTTCAGTCATTTCGAGAAAGAAGAAAAAGGCTGTGAACAAAAACAAAAGCTAACTGGTTTTCAACCAGGTAGCATAAGAGAGAGTTTGTGCACTGCTTACATAACCTTTTGTGCACATTTGGCAATATAAAGTGGAGTTGTGAGCCAAAGCCAATGTTTGAGGCCAAAAAGATCCTGTTCCAGTGATTATGACAATGGTATCCATAAAAAAAAAAAAAACACTTGGGCAGTAAATGCCCATTGTAAGGTCAGTTTTCCTGCCCAAATCCCAAGGTTCAATAATTTTGAGTTTAAAAAAAAAAAAAAAAAAAACTGATTTTAGTTTAGCATTAAAAGATGTATCTCACAAAACCTGTATTTTTGCATAAACAAAACTTTTTTTTTTTCATTGTGACATTATTGTATGACAATTAAGCACAATTTTCAAAATAATCAATTAAAAAAATGGTTTATTAAAGTTTATAAAGGGTTACACACATATATATATACACACATTATATATATATATATATATATATATATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATATATATATATAATGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTATATATATAAAAAATGTTCTAAATTTCATTTATACCTCTCAAGGGAACATATCCCTGCCTTTGTGCTGATTTAAATAAA

Function

symbol description
tbc1d2 Predicted to enable GTPase activator activity. Orthologous to human TBC1D2 (TBC1 domain family member 2).

GO:

id name namespace
GO:0031338 regulation of vesicle fusion biological_process

KEGG:

id description
K20165 TBC1D2; TBC1 domain family member 2A

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000000_01489740_01508942.mRNA True 4331 mRNA 0.41 15 1489063 1509629

Neighbor

gene id symbol gene type direction distance location
CI01000000_01411979_01443908 ABCA1B coding downstream 45155 1411304 ~ 1443908 (-)
CI01000000_01400145_01404700 NA coding downstream 84363 1400077 ~ 1404700 (-)
CI01000000_01363054_01377844 ADAM19B coding downstream 111219 1362095 ~ 1377844 (-)
CI01000000_01357072_01359013 NA coding downstream 130050 1355476 ~ 1359013 (-)
CI01000000_01188552_01195213 GNB2L1, GBLP, RACK1 coding downstream 293850 1188406 ~ 1195213 (-)
CI01000000_01532051_01537246 SMU1.S, SMU1 coding upstream 22422 1532051 ~ 1538050 (-)
CI01000000_01802714_01804315 NA coding upstream 292141 1801770 ~ 1804315 (-)
CI01000000_01822466_01837458 NA coding upstream 312748 1822377 ~ 1837593 (-)
CI01000000_01837862_01840696 NA coding upstream 328037 1837666 ~ 1840696 (-)
CI01000000_01881532_01883187 NA coding upstream 371239 1880868 ~ 1883187 (-)
G1095 NA non-coding downstream 128063 1360642 ~ 1361000 (-)
G1074 NA non-coding downstream 175681 1313130 ~ 1313382 (-)
G1071 NA non-coding downstream 202748 1285971 ~ 1286315 (-)
G1070 NA non-coding downstream 203370 1285385 ~ 1285693 (-)
G1060 NA non-coding downstream 239112 1249726 ~ 1249951 (-)
G1114 NA non-coding upstream 7464 1517093 ~ 1518726 (-)
G1131 NA non-coding upstream 60645 1570274 ~ 1570509 (-)
G1140 NA non-coding upstream 93150 1602779 ~ 1603007 (-)
G1125 NA non-coding upstream 121069 1630698 ~ 1631275 (-)
G1124 NA non-coding upstream 122098 1631727 ~ 1693643 (-)
G1077 NA other downstream 137885 1332179 ~ 1351178 (-)
CI01000000_00683745_00689383 NA other downstream 799610 682205 ~ 689610 (-)
G795 NA other downstream 1331073 157542 ~ 157990 (-)
G1270 NA other upstream 414452 1924081 ~ 1978336 (-)
CI01000000_03172562_03175863 HIGD2A other upstream 1660762 3170391 ~ 3175863 (-)
CI01000000_03245643_03246684 NA other upstream 1735505 3245134 ~ 3246721 (-)
CI01000000_03564077_03564373 NA other upstream 2057070 3562887 ~ 3567571 (-)
G2484 NA other upstream 2060437 3570066 ~ 3573554 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_007097 tbc1d2 coding NC_007125.7 CM002898.2 6287871 ~ 6329931 (+)